Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0007533

Physical Location & Seq

Genomic Coordinates Reverse (-)

20100372 .. 20101114

Gene Structure 743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG221700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTCCGATGGGTTGGTCGAGTTTTACAACAGCGTTCAGGAGGTTTCGGTTAAACTGTATCAAATGGGCCGCTCCGATCCTCGGAAAGCTTACTTCGCCGCCAAGATGGGCTTGTCGCTGGCGATTGTGTCACTGCTCATATTTTTCAAGGAGCCCCTCAAAGATGCTAGCCAATATTCCATCTTGGCGATTCTCACCGTTGTCGTCGTTTTCGAATTCAGCATAGGTGCGACGTTGAACAAAGGGTTTAATCGTGCTTTGGGGACAATTTCGGCTGGAGGGCTGGCTCTAGGTATAGCAGAGTTGGCTGCAATGGCCGGAACTGGCAGGAGGTGTGATTGTAGTCAATATTGGATTTCTTCCAATGCTCTGCAAATGGATTTACCGTTGGCCTGGTTATGCTTCTTCGGGGATTTGATGCAAATGAACATTGTTCTTGGTGTCATTATTTGTCTTGTGTTCCTACATCAAAATGGAGCTGCAATTCAGAGCCCGCATACTGCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005253 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0009987 GO:0010118 GO:0015075 GO:0015103 GO:0015140 GO:0015267 GO:0015318 GO:0015556 GO:0015698 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0090332 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

169

Amino Acids

18.29

Weight (kDa)

6.7

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	21 - 108	2.6e-38	Aluminium activated malate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007533)

Species	Orthologous Gene IDs
malus_domestica	MD16G1045200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0333421 RchiOBHm_Chr2g0126501 RchiOBHm_Chr3g0474511
rosa_laevigata	RLG00000033994
rosa_multiflora	Rmu_sc0000662.1_g000018 Rmu_sc0003575.1_g000006 Rmu_sc0022428.1_g000002 Rmu_sc0034830.1_g000001 Rmu_sc0040437.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186040
rosa_rugosa	Rorug07G0320900
rosa_samantha	Rh2AG320400 Rh2CG308600 Rh2DG348200 Rh3BG221700 Rh3CG216400 Rh3CG361800 Rh3DG217200 Rh5BG072300 Rh5BG163500 Rh7AG255900 Rh7BG441900 Rh7CG272300
rosa_wichuraiana	Rw1G014850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	72
AciI	CCGC	3 cut(s)	70, 99, 494
AclWI	GGATC	1 cut(s)	71
AcoI	YGGCCR	1 cut(s)	315
AcsI	RAATTY	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	81
AgsI	TTSAA	2 cut(s)	148, 238
AjnI	CCWGG	1 cut(s)	392
AluBI	AGCT	2 cut(s)	89, 479
AluI	AGCT	2 cut(s)	89, 479
AlwI	GGATC	1 cut(s)	71
AoxI	GGCC	3 cut(s)	67, 315, 390
ApeKI	GCWGC	2 cut(s)	308, 479
ApoI	RAATTY	1 cut(s)	215
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	187
AsuII	TTCGAA	1 cut(s)	213
AsuNHI	GCTAGC	1 cut(s)	167
BanII	GRGCYC	2 cut(s)	156, 494
BbvI	GCAGC	2 cut(s)	295, 466
BccI	CCATC	3 cut(s)	2, 100, 188
BciT130I	CCWGG	1 cut(s)	394
BfaI	CTAG	2 cut(s)	168, 290
BisI	GCNGC	4 cut(s)	70, 99, 309, 480
BlsI	GCNGC	4 cut(s)	71, 100, 310, 481
Bme1390I	CCNGG	1 cut(s)	394
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	394
BmsI	GCATC	2 cut(s)	154, 408
BmtI	GCTAGC	1 cut(s)	171
BpmI	CTGGAG	1 cut(s)	297
Bpu14I	TTCGAA	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse1I	ACTGG	1 cut(s)	328
Bse3DI	GCAATG	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	394
BseDI	CCNNGG	1 cut(s)	80
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMI	GCAATG	1 cut(s)	318
BseNI	ACTGG	1 cut(s)	328
BseXI	GCAGC	2 cut(s)	295, 466
BshFI	GGCC	3 cut(s)	69, 317, 392
BsiSI	CCGG	1 cut(s)	318
BslFI	GGGAC	1 cut(s)	277
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	277
BsnI	GGCC	3 cut(s)	69, 317, 392
Bsp119I	TTCGAA	1 cut(s)	213
Bsp1286I	GDGCHC	2 cut(s)	156, 494
Bsp143I	GATC	1 cut(s)	76
BspACI	CCGC	3 cut(s)	70, 99, 494
BspANI	GGCC	3 cut(s)	69, 317, 392
BspLI	GGNNCC	1 cut(s)	153
BspOI	GCTAGC	1 cut(s)	171
BspPI	GGATC	1 cut(s)	71
BspT104I	TTCGAA	1 cut(s)	213
BsrBI	CCGCTC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	318
BsrI	ACTGG	1 cut(s)	328
BssECI	CCNNGG	1 cut(s)	80
BssMI	GATC	1 cut(s)	76
Bst2UI	CCWGG	1 cut(s)	394
Bst4CI	ACNGT	3 cut(s)	57, 199, 387
BstBI	TTCGAA	1 cut(s)	213
BstC8I	GCNNGC	4 cut(s)	120, 169, 285, 494
BstKTI	GATC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 305, 314
BstNI	CCWGG	1 cut(s)	394
BstSCI	CCNGG	1 cut(s)	392
BstV1I	GCAGC	2 cut(s)	295, 466
BsuRI	GGCC	3 cut(s)	69, 317, 392
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	131
Cac8I	GCNNGC	4 cut(s)	120, 169, 285, 494
Cfr13I	GGNCC	1 cut(s)	67
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
EaeI	YGGCCR	1 cut(s)	315
Eco24I	GRGCYC	2 cut(s)	156, 494
EcoRI	GAATTC	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	392
EcoT38I	GRGCYC	2 cut(s)	156, 494
FaiI	YATR	5 cut(s)	140, 224, 296, 400, 498
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FaqI	GGGAC	1 cut(s)	277
FauI	CCCGC	1 cut(s)	501
Fnu4HI	GCNGC	4 cut(s)	70, 99, 309, 480
FriOI	GRGCYC	2 cut(s)	156, 494
Fsp4HI	GCNGC	4 cut(s)	70, 99, 309, 480
FspBI	CTAG	2 cut(s)	168, 290
GluI	GCNGC	4 cut(s)	70, 99, 309, 480
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	3 cut(s)	69, 317, 392
HapII	CCGG	1 cut(s)	318
HindIII	AAGCTT	1 cut(s)	87
HinfI	GANTC	1 cut(s)	190
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	1 cut(s)	187
Hpy188I	TCNGA	4 cut(s)	7, 76, 84, 489
Hpy188III	TCNNGA	1 cut(s)	38
Hpy99I	CGWCG	2 cut(s)	209, 235
HpyCH4III	ACNGT	3 cut(s)	57, 199, 387
HpyCH4IV	ACGT	1 cut(s)	233
HpyCH4V	TGCA	4 cut(s)	311, 373, 421, 482
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 305, 314
HpySE526I	ACGT	1 cut(s)	233
Kzo9I	GATC	1 cut(s)	76
LmnI	GCTCC	3 cut(s)	77, 151, 476
LpnPI	CCDG	9 cut(s)	23, 104, 261, 269, 309, 313, 331, 379, 406
Lsp1109I	GCAGC	2 cut(s)	295, 466
LweI	GCATC	2 cut(s)	154, 408
MaeI	CTAG	2 cut(s)	168, 290
MaeII	ACGT	1 cut(s)	233
MaeIII	GTNAC	1 cut(s)	129
MalI	GATC	1 cut(s)	78
MbiI	CCGCTC	1 cut(s)	72
MboI	GATC	1 cut(s)	76
MboII	GAAGA	2 cut(s)	351, 397
MhlI	GDGCHC	2 cut(s)	156, 494
MluCI	AATT	3 cut(s)	215, 267, 483
MnlI	CCTC	5 cut(s)	34, 90, 167, 272, 324
MseI	TTAA	2 cut(s)	51, 249
MslI	CAYNNNNRTG	1 cut(s)	471
MspI	CCGG	1 cut(s)	318
MspR9I	CCNGG	1 cut(s)	394
MvaI	CCWGG	1 cut(s)	394
MwoI	GCNNNNNNNGC	3 cut(s)	95, 305, 314
NdeII	GATC	1 cut(s)	76
NheI	GCTAGC	1 cut(s)	167
NlaIV	GGNNCC	1 cut(s)	153
NmuCI	GTSAC	1 cut(s)	129
NspV	TTCGAA	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	190
PkrI	GCNGC	4 cut(s)	71, 100, 310, 481
Psp6I	CCWGG	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	392
PspN4I	GGNNCC	1 cut(s)	153
PspPI	GGNCC	1 cut(s)	67
RseI	CAYNNNNRTG	1 cut(s)	471
SaqAI	TTAA	2 cut(s)	51, 249
SatI	GCNGC	4 cut(s)	70, 99, 309, 480
Sau3AI	GATC	1 cut(s)	76
Sau96I	GGNCC	1 cut(s)	67
ScrFI	CCNGG	1 cut(s)	394
SduI	GDGCHC	2 cut(s)	156, 494
SetI	ASST	7 cut(s)	45, 91, 229, 236, 295, 335, 481
SfaNI	GCATC	2 cut(s)	154, 408
SfuI	TTCGAA	1 cut(s)	213
SmiMI	CAYNNNNRTG	1 cut(s)	471
Sse9I	AATT	3 cut(s)	215, 267, 483
SsiI	CCGC	3 cut(s)	70, 99, 494
SspI	AATATT	2 cut(s)	176, 350
SspMI	CTAG	2 cut(s)	168, 290
StyD4I	CCNGG	1 cut(s)	392
TaaI	ACNGT	3 cut(s)	57, 199, 387
TaiI	ACGT	1 cut(s)	236
TaqI	TCGA	2 cut(s)	18, 213
TasI	AATT	3 cut(s)	215, 267, 483
TauI	GCSGC	2 cut(s)	72, 101
TfiI	GAWTC	1 cut(s)	190
Tru1I	TTAA	2 cut(s)	51, 249
Tru9I	TTAA	2 cut(s)	51, 249
TscAI	CASTG	1 cut(s)	138
TseFI	GTSAC	1 cut(s)	129
TseI	GCWGC	2 cut(s)	308, 479
Tsp45I	GTSAC	1 cut(s)	129
TspDTI	ATGAA	1 cut(s)	440
TspRI	CASTG	1 cut(s)	138
XapI	RAATTY	1 cut(s)	215
XspI	CTAG	2 cut(s)	168, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.