Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022428.1

Orthogroup ID

OG0007533

Physical Location & Seq

Genomic Coordinates Forward (+)

3724 .. 4766

Gene Structure 1043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022428.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atgtctgatgggttggtcaacttttgcaacaacgttcaggaggtgtctgttaaactgtatcaaatgggccgctccgatactcggaaagcttacttcgcagatgggcttgtcgctggcgattgtaaaggtgcgacgttgaacaaagggtttaatcgcgctttggggacaatttcagctggagggctagctctaggtgtagcagagttggctgtaatggtcggaagttggcaggaggttgtgattgtagtcaatattttcatagcaggttttcttgctagctatatcaagctttattcgccaatgaagacttatcaatacggatttcaagtgttcttgttgacatacagggaggatctccacaagctggtggtgaaaaatttcaaggatgttgctacttctttggaaggtgttgttaatggatatctgcaatgtgttgagtacgagagaattccttcgaaaattctcacataccaagcttctgatgaaccattgtataatggatatagagctactatacaatcttcaacccaagaggaatcaagaaggctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005253 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0009987 GO:0010118 GO:0015075 GO:0015103 GO:0015140 GO:0015267 GO:0015318 GO:0015556 GO:0015698 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0090332 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

183

Amino Acids

20.3

Weight (kDa)

7.63

Isoelectric Point (pI)

25.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007533)

Species	Orthologous Gene IDs
malus_domestica	MD16G1045200.v1.1
rosa_chinensis	RchiOBHm_Chr1g0333421 RchiOBHm_Chr2g0126501 RchiOBHm_Chr3g0474511
rosa_laevigata	RLG00000033994
rosa_multiflora	Rmu_sc0000662.1_g000018 Rmu_sc0003575.1_g000006 Rmu_sc0022428.1_g000002 Rmu_sc0034830.1_g000001 Rmu_sc0040437.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186040
rosa_rugosa	Rorug07G0320900
rosa_samantha	Rh2AG320400 Rh2CG308600 Rh2DG348200 Rh3BG221700 Rh3CG216400 Rh3CG361800 Rh3DG217200 Rh5BG072300 Rh5BG163500 Rh7AG255900 Rh7BG441900 Rh7CG272300
rosa_wichuraiana	Rw1G014850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	254
AccB7I	CCANNNNNTGG	1 cut(s)	364
AccBSI	CCGCTC	1 cut(s)	72
AccII	CGCG	1 cut(s)	156
AciI	CCGC	1 cut(s)	70
AclI	AACGTT	1 cut(s)	33
AclWI	GGATC	1 cut(s)	360
AcsI	RAATTY	3 cut(s)	376, 447, 459
AfaI	GTAC	1 cut(s)	440
AfiI	CCNNNNNNNGG	2 cut(s)	81, 364
AgsI	TTSAA	4 cut(s)	139, 326, 382, 525
AluBI	AGCT	8 cut(s)	89, 176, 188, 279, 289, 364, 476, 509
AluI	AGCT	8 cut(s)	89, 176, 188, 279, 289, 364, 476, 509
AlwI	GGATC	1 cut(s)	360
AoxI	GGCC	1 cut(s)	67
ApoI	RAATTY	3 cut(s)	376, 447, 459
Asp700I	GAANNNNTTC	2 cut(s)	377, 451
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	382
AsuII	TTCGAA	1 cut(s)	455
AsuNHI	GCTAGC	2 cut(s)	184, 275
BbsI	GAAGAC	1 cut(s)	311
BccI	CCATC	2 cut(s)	2, 95
BfaI	CTAG	3 cut(s)	185, 191, 276
BfuAI	ACCTGC	1 cut(s)	254
BisI	GCNGC	1 cut(s)	70
BlsI	GCNGC	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	67
BmtI	GCTAGC	2 cut(s)	188, 279
BpiI	GAAGAC	1 cut(s)	311
BpmI	CTGGAG	1 cut(s)	198
Bpu14I	TTCGAA	1 cut(s)	455
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 364
Bse3DI	GCAATG	1 cut(s)	434
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	2 cut(s)	81, 364
BseMI	GCAATG	1 cut(s)	434
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	2 cut(s)	81, 364
BsmFI	GGGAC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	69
Bsp119I	TTCGAA	1 cut(s)	455
Bsp143I	GATC	1 cut(s)	352
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	1 cut(s)	69
BspFNI	CGCG	1 cut(s)	156
BspMI	ACCTGC	1 cut(s)	254
BspOI	GCTAGC	2 cut(s)	188, 279
BspPI	GGATC	1 cut(s)	360
BspT104I	TTCGAA	1 cut(s)	455
BsrBI	CCGCTC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	434
BssMI	GATC	1 cut(s)	352
Bst4CI	ACNGT	1 cut(s)	57
BstBI	TTCGAA	1 cut(s)	455
BstC8I	GCNNGC	3 cut(s)	115, 186, 277
BstF5I	GGATG	1 cut(s)	391
BstFNI	CGCG	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	1 cut(s)	355
BstMBI	GATC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 206, 295
BstUI	CGCG	1 cut(s)	156
BstV2I	GAAGAC	1 cut(s)	311
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	391
BveI	ACCTGC	1 cut(s)	254
Cac8I	GCNNGC	3 cut(s)	115, 186, 277
CfoI	GCGC	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	439
CviQI	GTAC	1 cut(s)	439
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
Eco32I	GATATC	1 cut(s)	422
EcoRI	GAATTC	1 cut(s)	447
EcoRV	GATATC	1 cut(s)	422
FaiI	YATR	7 cut(s)	260, 282, 343, 469, 495, 504, 515
FaqI	GGGAC	1 cut(s)	178
Fnu4HI	GCNGC	1 cut(s)	70
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	1 cut(s)	70
FspBI	CTAG	3 cut(s)	185, 191, 276
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	1 cut(s)	70
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	69
HhaI	GCGC	1 cut(s)	158
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HincII	GTYRAC	2 cut(s)	19, 339
HindII	GTYRAC	2 cut(s)	19, 339
HindIII	AAGCTT	3 cut(s)	87, 287, 474
HinfI	GANTC	1 cut(s)	536
HphI	GGTGA	1 cut(s)	382
Hpy166II	GTNNAC	2 cut(s)	19, 339
Hpy188I	TCNGA	5 cut(s)	7, 76, 84, 221, 481
Hpy188III	TCNNGA	2 cut(s)	38, 540
Hpy8I	GTNNAC	2 cut(s)	19, 339
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	3 cut(s)	398, 462, 537
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4IV	ACGT	2 cut(s)	33, 134
HpyCH4V	TGCA	2 cut(s)	27, 427
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 206, 295
HpySE526I	ACGT	2 cut(s)	33, 134
HspAI	GCGC	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	352
LmnI	GCTCC	1 cut(s)	77
LpnPI	CCDG	7 cut(s)	23, 99, 162, 215, 249, 331, 350
MaeI	CTAG	3 cut(s)	185, 191, 276
MaeII	ACGT	2 cut(s)	33, 134
MalI	GATC	1 cut(s)	354
MbiI	CCGCTC	1 cut(s)	72
MboI	GATC	1 cut(s)	352
MboII	GAAGA	2 cut(s)	316, 513
MflI	RGATCY	1 cut(s)	352
MluCI	AATT	4 cut(s)	168, 376, 447, 459
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	5 cut(s)	34, 173, 226, 343, 526
MroXI	GAANNNNTTC	2 cut(s)	377, 451
MseI	TTAA	3 cut(s)	51, 150, 414
MspA1I	CMGCKG	1 cut(s)	176
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	3 cut(s)	95, 206, 295
NdeII	GATC	1 cut(s)	352
NheI	GCTAGC	2 cut(s)	184, 275
NspV	TTCGAA	1 cut(s)	455
PdmI	GAANNNNTTC	2 cut(s)	377, 451
PfeI	GAWTC	1 cut(s)	536
PflMI	CCANNNNNTGG	1 cut(s)	364
PkrI	GCNGC	1 cut(s)	71
Psp1406I	AACGTT	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	352
PvuII	CAGCTG	1 cut(s)	176
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
SaqAI	TTAA	3 cut(s)	51, 150, 414
SatI	GCNGC	1 cut(s)	70
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	1 cut(s)	67
SfuI	TTCGAA	1 cut(s)	455
Sse9I	AATT	4 cut(s)	168, 376, 447, 459
SsiI	CCGC	1 cut(s)	70
SspI	AATATT	1 cut(s)	253
SspMI	CTAG	3 cut(s)	185, 191, 276
TaaI	ACNGT	1 cut(s)	57
TaiI	ACGT	2 cut(s)	36, 137
TaqI	TCGA	1 cut(s)	455
TasI	AATT	4 cut(s)	168, 376, 447, 459
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	1 cut(s)	536
Tru1I	TTAA	3 cut(s)	51, 150, 414
Tru9I	TTAA	3 cut(s)	51, 150, 414
TspDTI	ATGAA	3 cut(s)	247, 317, 498
TspGWI	ACGGA	1 cut(s)	333
Van91I	CCANNNNNTGG	1 cut(s)	364
XapI	RAATTY	3 cut(s)	376, 447, 459
XmnI	GAANNNNTTC	2 cut(s)	377, 451
XspI	CTAG	3 cut(s)	185, 191, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.