RchiOBHm_Chr1g0340401

tRNA (guanine-N(7)-)-methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
31979323 .. 31981079
1757 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 318 bp
ATGTTGAAAGTCCCATCTTTGGAAGACGACGGGGCTGGTCCATGGATTTTTTTTCCTTTTGCCGCATTTTGCTCAAAGGTGTTTATACAGTCCGATGTACTTGACGTCGCACTTGAGATGAGAAACCAATTTGATTCTCTGCCCCATGTTCTGAAGCACATAGATGAAATCGAATCCAGCATGTTGTGTGACAGTGAGGGATGGTTGTTGAACAATCCAATGGGCAAAAGGACGGAAAGAGAAATTCATGCTGAATTTGAAGGGGCAAAAATTTACAGGAGAGTATACCAGAAGCAAGCACAGAAGGCTCTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

105

Amino Acids

12.03

Weight (kDa)

5.29

Isoelectric Point (pI)

54.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 108
AccI GTMKAC 1 cut(s) 285
AciI CCGC 1 cut(s) 63
AcsI RAATTY 3 cut(s) 243, 254, 270
AcuI CTGAAG 1 cut(s) 173
AcyI GRCGYC 1 cut(s) 105
AfaI GTAC 1 cut(s) 99
AfiI CCNNNNNNNGG 1 cut(s) 19
AgsI TTSAA 3 cut(s) 7, 211, 260
ApoI RAATTY 3 cut(s) 243, 254, 270
AspS9I GGNCC 1 cut(s) 38
AvaII GGWCC 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 30
BccI CCATC 2 cut(s) 22, 195
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme18I GGWCC 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 38
BpiI GAAGAC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 134
BsaHI GRCGYC 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 41
Bsc4I CCNNNNNNNGG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 41
BseGI GGATG 1 cut(s) 206
BseLI CCNNNNNNNGG 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 19
Bsp19I CCATGG 1 cut(s) 41
BspACI CCGC 1 cut(s) 63
BssECI CCNNGG 1 cut(s) 41
BssNAI GTATAC 1 cut(s) 286
BssNI GRCGYC 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 41
Bst1107I GTATAC 1 cut(s) 286
Bst4CI ACNGT 2 cut(s) 90, 194
BstACI GRCGYC 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 297
BstDSI CCRYGG 1 cut(s) 41
BstF5I GGATG 1 cut(s) 206
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 184
BstV2I GAAGAC 1 cut(s) 30
BstZ17I GTATAC 1 cut(s) 286
BtgI CCRYGG 1 cut(s) 41
BtsCI GGATG 1 cut(s) 206
BtsIMutI CAGTG 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 38
Csp6I GTAC 1 cut(s) 98
CviAII CATG 4 cut(s) 42, 146, 181, 248
CviJI RGCY 2 cut(s) 35, 308
CviKI_1 RGCY 2 cut(s) 35, 308
CviQI GTAC 1 cut(s) 98
Eco130I CCWWGG 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 38
Eco57I CTGAAG 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 41
FaeI CATG 4 cut(s) 45, 149, 184, 251
FaiI YATR 7 cut(s) 43, 86, 147, 161, 182, 249, 286
FatI CATG 4 cut(s) 41, 145, 180, 247
FblI GTMKAC 1 cut(s) 285
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 1 cut(s) 213
Fsp4HI GCNGC 1 cut(s) 63
GluI GCNGC 1 cut(s) 63
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 4 cut(s) 45, 149, 184, 251
HinfI GANTC 2 cut(s) 134, 173
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 2 cut(s) 94, 153
Hpy8I GTNNAC 1 cut(s) 286
Hpy99I CGWCG 2 cut(s) 32, 110
HpyAV CCTTC 2 cut(s) 254, 298
HpyCH4III ACNGT 2 cut(s) 90, 194
HpyCH4IV ACGT 1 cut(s) 105
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpySE526I ACGT 1 cut(s) 105
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 4 cut(s) 45, 149, 184, 251
LpnPI CCDG 4 cut(s) 21, 190, 262, 302
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 1 cut(s) 188
MboII GAAGA 1 cut(s) 35
MluCI AATT 4 cut(s) 128, 243, 254, 270
MnlI CCTC 1 cut(s) 190
MslI CAYNNNNRTG 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 305
NcoI CCATGG 1 cut(s) 41
NlaIII CATG 4 cut(s) 45, 149, 184, 251
NmuCI GTSAC 1 cut(s) 188
NspI RCATGY 1 cut(s) 184
PfeI GAWTC 2 cut(s) 134, 173
PkrI GCNGC 1 cut(s) 64
PspPI GGNCC 1 cut(s) 38
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
RseI CAYNNNNRTG 1 cut(s) 162
SatI GCNGC 1 cut(s) 63
Sau96I GGNCC 1 cut(s) 38
SetI ASST 2 cut(s) 81, 108
SinI GGWCC 1 cut(s) 38
SmiMI CAYNNNNRTG 1 cut(s) 162
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 4 cut(s) 128, 243, 254, 270
SsiI CCGC 1 cut(s) 63
StyI CCWWGG 1 cut(s) 41
TaaI ACNGT 2 cut(s) 90, 194
TaiI ACGT 1 cut(s) 108
TaqI TCGA 1 cut(s) 171
TasI AATT 4 cut(s) 128, 243, 254, 270
TatI WGTACW 1 cut(s) 97
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 2 cut(s) 134, 173
TscAI CASTG 1 cut(s) 199
TseFI GTSAC 1 cut(s) 188
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 2 cut(s) 180, 236
TspGWI ACGGA 1 cut(s) 248
TspRI CASTG 1 cut(s) 199
VpaK11BI GGWCC 1 cut(s) 38
XapI RAATTY 3 cut(s) 243, 254, 270
XceI RCATGY 1 cut(s) 184
XmiI GTMKAC 1 cut(s) 285
ZraI GACGTC 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.