RchiOBHm_Chr1g0367511

Domain of unknown function (DUF3475)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003956
Physical Location & Seq
Forward (+)
57809439 .. 57809916
478 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 288 bp
ATGTTGCCTGCAAATATGAGAGCTGAGCTAAGTGAAAGGCTGCCTTCTATCAAGAGCTCGACTTCATCAGTTCGCGATCTTGCAGCAGAGCGGAAGGTGCCAATGGCAGAAATATTAGAATGGTTAGCACCACTTGCTCATAATACGACGAAATGGCAGTCCAAGAGGAACTTTCAACAGAAAGCCTCATGTGCTTCTGGTACAAACCCTCTACTTTGCAAATCAACAGAAGACAGAAGCAACAATTATGGAACTTCTTGTTGGTTTGCAGTACATCTACCAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3475 DUF668

Protein Analysis

95

Amino Acids

10.62

Weight (kDa)

9.26

Isoelectric Point (pI)

55.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF668 PF05003 1 - 51 3.3e-10 Protein of unknown function (DUF668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 97
AccBSI CCGCTC 1 cut(s) 91
AccII CGCG 1 cut(s) 75
AciI CCGC 1 cut(s) 91
AfaI GTAC 2 cut(s) 202, 273
AgsI TTSAA 1 cut(s) 176
AjuI GAANNNNNNNTTGG 2 cut(s) 244, 276
AluBI AGCT 3 cut(s) 23, 28, 57
AluI AGCT 3 cut(s) 23, 28, 57
Alw21I GWGCWC 1 cut(s) 59
ApeKI GCWGC 2 cut(s) 40, 83
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
BanI GGYRCC 1 cut(s) 97
BanII GRGCYC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 2 cut(s) 27, 95
BisI GCNGC 2 cut(s) 41, 84
BlpI GCTNAGC 1 cut(s) 24
BlsI GCNGC 2 cut(s) 42, 85
BmiI GGNNCC 1 cut(s) 99
BpiI GAAGAC 1 cut(s) 237
Bpu1102I GCTNAGC 1 cut(s) 24
BseMII CTCAG 1 cut(s) 15
BseXI GCAGC 2 cut(s) 27, 95
Bsh1236I CGCG 1 cut(s) 75
BshNI GGYRCC 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 1 cut(s) 76
Bsp1720I GCTNAGC 1 cut(s) 24
Bsp68I TCGCGA 1 cut(s) 75
BspACI CCGC 1 cut(s) 91
BspCNI CTCAG 1 cut(s) 16
BspFNI CGCG 1 cut(s) 75
BspLI GGNNCC 1 cut(s) 99
BspT107I GGYRCC 1 cut(s) 97
BsrBI CCGCTC 1 cut(s) 91
BssMI GATC 1 cut(s) 76
BstAPI GCANNNNNTGC 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 2 cut(s) 24, 29
BstFNI CGCG 1 cut(s) 75
BstKTI GATC 1 cut(s) 79
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 3 cut(s) 97, 134, 191
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 2 cut(s) 27, 95
BstV2I GAAGAC 1 cut(s) 237
BtuMI TCGCGA 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 9
Csp6I GTAC 2 cut(s) 201, 272
CviAII CATG 1 cut(s) 189
CviJI RGCY 5 cut(s) 23, 28, 40, 57, 185
CviKI_1 RGCY 5 cut(s) 23, 28, 40, 57, 185
CviQI GTAC 2 cut(s) 201, 272
DdeI CTNAG 2 cut(s) 24, 29
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
Ecl136II GAGCTC 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 59
Eco53kI GAGCTC 1 cut(s) 57
EcoICRI GAGCTC 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 1 cut(s) 192
FaiI YATR 4 cut(s) 17, 141, 190, 249
FalI AAGNNNNNCTT 4 cut(s) 28, 60, 155, 187
FatI CATG 1 cut(s) 188
Fnu4HI GCNGC 2 cut(s) 41, 84
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 2 cut(s) 41, 84
GluI GCNGC 2 cut(s) 41, 84
Hin1II CATG 1 cut(s) 192
Hpy188I TCNGA 1 cut(s) 287
Hpy188III TCNNGA 2 cut(s) 52, 74
Hpy99I CGWCG 1 cut(s) 151
HpyAV CCTTC 2 cut(s) 54, 88
HpyCH4V TGCA 4 cut(s) 11, 83, 219, 269
HpyF10VI GCNNNNNNNGC 3 cut(s) 97, 134, 191
HpyF3I CTNAG 2 cut(s) 24, 29
Hsp92II CATG 1 cut(s) 192
Kzo9I GATC 1 cut(s) 76
LpnPI CCDG 2 cut(s) 21, 183
Lsp1109I GCAGC 2 cut(s) 27, 95
MalI GATC 1 cut(s) 78
MbiI CCGCTC 1 cut(s) 91
MboI GATC 1 cut(s) 76
MboII GAAGA 1 cut(s) 242
MhlI GDGCHC 1 cut(s) 59
MluCI AATT 1 cut(s) 244
MnlI CCTC 3 cut(s) 159, 196, 219
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 3 cut(s) 97, 134, 191
NdeII GATC 1 cut(s) 76
NlaIII CATG 1 cut(s) 192
NlaIV GGNNCC 1 cut(s) 99
NruI TCGCGA 1 cut(s) 75
PkrI GCNGC 2 cut(s) 42, 85
Psp124BI GAGCTC 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 99
RruI TCGCGA 1 cut(s) 75
RsaI GTAC 2 cut(s) 202, 273
RsaNI GTAC 2 cut(s) 201, 272
SacI GAGCTC 1 cut(s) 59
SatI GCNGC 2 cut(s) 41, 84
Sau3AI GATC 1 cut(s) 76
SduI GDGCHC 1 cut(s) 59
SetI ASST 4 cut(s) 25, 30, 59, 99
Sse9I AATT 1 cut(s) 244
SsiI CCGC 1 cut(s) 91
SspI AATATT 1 cut(s) 114
SstI GAGCTC 1 cut(s) 59
TaqI TCGA 1 cut(s) 59
TasI AATT 1 cut(s) 244
TatI WGTACW 1 cut(s) 271
TseI GCWGC 2 cut(s) 40, 83
TspDTI ATGAA 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.