RchiOBHm_Chr1g0373841

May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004629
Physical Location & Seq
Reverse (-)
61859702 .. 61860942
1241 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 624 bp
ATGGAGATTTACATAATAGCAAAATATGGTGTGTCACTGGAGAGAGGACCCTTTGACAAGAGAACTGCAGACTATGTGTGGATGCTCATCTTTGGAGCAATGTCGCTTTTGGTGATGTCTGTTGTTCCAGTTTTGTGGTCTCCGTTTATGGGGACTTCTGTGGTTTTCATGATCGTGTATGTTTGGTCTCGTGAGTTCCCAAATGCACGTATTAGCGTATATGGGCTTGTTTCCTTGAAGGGGTTCTATCTTCCGTACGTAATGTTGGCTTTTGATGTGTTGGTGGGAAACCCTTTGAAGCCAGACATGTTAGGGATAGTTGCAGGACATCTCTACTACTTTCTAACAGTGCTTCATCCTCTTGCTGGTGGAAAATTCACGCTCAAGACTCCTCTATGGGTGCACAGAGTAGTAGCCTACTGGGGTGAGGGAACCCAAGTGAATGCTCCAGTGCAGAGCAGTCCATACGCCGGAGTTGCATTCCAAGGTAGAAGCTTCCGTCTCAACGGAAATACTCGAAGAACACCCACTCCGGAGCAGCCACAAACAAACACCGGCCAGCAGCCTAATCAGGGTGATGGAGTTGCTTTTCGGGGAAGAAGCCACCGACTCGATCGTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DER1

Protein Analysis

207

Amino Acids

23.2

Weight (kDa)

9.84

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DER1 PF04511 1 - 131 1.3e-29 Der1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 532
AcoI YGGCCR 1 cut(s) 556
AcsI RAATTY 1 cut(s) 374
AfaI GTAC 1 cut(s) 257
AfiI CCNNNNNNNGG 5 cut(s) 149, 240, 365, 470, 572
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 2 cut(s) 238, 298
AloI GAACNNNNNNTCC 2 cut(s) 514, 546
AluBI AGCT 1 cut(s) 495
AluI AGCT 1 cut(s) 495
Alw21I GWGCWC 1 cut(s) 405
Alw26I GTCTC 3 cut(s) 144, 192, 506
Alw44I GTGCAC 1 cut(s) 401
Aor13HI TCCGGA 1 cut(s) 532
AoxI GGCC 1 cut(s) 556
ApaLI GTGCAC 1 cut(s) 401
ApeKI GCWGC 2 cut(s) 538, 562
ApoI RAATTY 1 cut(s) 374
Asp700I GAANNNNTTC 1 cut(s) 242
AspS9I GGNCC 1 cut(s) 47
AsuHPI GGTGA 3 cut(s) 124, 437, 587
AvaII GGWCC 1 cut(s) 47
BaeGI GKGCMC 1 cut(s) 405
BauI CACGAG 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 405
BbvI GCAGC 2 cut(s) 550, 574
BccI CCATC 1 cut(s) 572
BcoDI GTCTC 3 cut(s) 144, 192, 506
BfmI CTRYAG 1 cut(s) 66
BisI GCNGC 2 cut(s) 539, 563
BlsI GCNGC 2 cut(s) 540, 564
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 2 cut(s) 49, 433
BmrI ACTGGG 1 cut(s) 430
BmsI GCATC 1 cut(s) 72
BmuI ACTGGG 1 cut(s) 430
BpmI CTGGAG 2 cut(s) 59, 432
BpuEI CTTGAG 1 cut(s) 368
BsaAI YACGTR 2 cut(s) 209, 259
BsaBI GATNNNNATC 1 cut(s) 86
BsaI GGTCTC 2 cut(s) 144, 192
BsaJI CCNNGG 1 cut(s) 484
BsaWI WCCGGW 1 cut(s) 532
BsaXI ACNNNNNCTCC 2 cut(s) 514, 544
Bsc4I CCNNNNNNNGG 5 cut(s) 149, 240, 365, 470, 572
Bse118I RCCGGY 1 cut(s) 554
Bse1I ACTGG 4 cut(s) 42, 128, 425, 449
Bse3DI GCAATG 1 cut(s) 105
Bse8I GATNNNNATC 1 cut(s) 86
BseAI TCCGGA 1 cut(s) 532
BseDI CCNNGG 1 cut(s) 484
BseGI GGATG 2 cut(s) 87, 355
BseJI GATNNNNATC 1 cut(s) 86
BseLI CCNNNNNNNGG 5 cut(s) 149, 240, 365, 470, 572
BseMI GCAATG 1 cut(s) 105
BseNI ACTGG 4 cut(s) 42, 128, 425, 449
BseRI GAGGAG 1 cut(s) 381
BseSI GKGCMC 1 cut(s) 405
BseXI GCAGC 2 cut(s) 550, 574
BsgI GTGCAG 1 cut(s) 473
Bsh1285I CGRYCG 1 cut(s) 616
BshFI GGCC 1 cut(s) 558
BsiEI CGRYCG 1 cut(s) 616
BsiHKAI GWGCWC 1 cut(s) 405
BsiSI CCGG 3 cut(s) 471, 533, 555
BsiWI CGTACG 1 cut(s) 255
BslFI GGGAC 1 cut(s) 166
BslI CCNNNNNNNGG 5 cut(s) 149, 240, 365, 470, 572
BsmAI GTCTC 3 cut(s) 144, 192, 506
BsmBI CGTCTC 1 cut(s) 506
BsmFI GGGAC 1 cut(s) 166
BsmI GAATGC 2 cut(s) 448, 479
BsnI GGCC 1 cut(s) 558
Bso31I GGTCTC 2 cut(s) 144, 192
Bsp1286I GDGCHC 1 cut(s) 405
Bsp13I TCCGGA 1 cut(s) 532
Bsp143I GATC 2 cut(s) 171, 613
BspANI GGCC 1 cut(s) 558
BspEI TCCGGA 1 cut(s) 532
BspHI TCATGA 1 cut(s) 168
BspLI GGNNCC 2 cut(s) 49, 433
BspMAI CTGCAG 1 cut(s) 70
BspTNI GGTCTC 2 cut(s) 144, 192
BsrDI GCAATG 1 cut(s) 105
BsrFI RCCGGY 1 cut(s) 554
BsrI ACTGG 4 cut(s) 42, 128, 425, 449
BssAI RCCGGY 1 cut(s) 554
BssECI CCNNGG 1 cut(s) 484
BssMI GATC 2 cut(s) 171, 613
BssSI CACGAG 1 cut(s) 189
BssT1I CCWWGG 1 cut(s) 484
Bst2BI CACGAG 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 349
BstBAI YACGTR 2 cut(s) 209, 259
BstC8I GCNNGC 1 cut(s) 560
BstF5I GGATG 2 cut(s) 87, 355
BstKTI GATC 2 cut(s) 174, 616
BstMAI GTCTC 3 cut(s) 144, 192, 506
BstMBI GATC 2 cut(s) 171, 613
BstMCI CGRYCG 1 cut(s) 616
BstMWI GCNNNNNNNGC 1 cut(s) 476
BstNSI RCATGY 1 cut(s) 310
BstSFI CTRYAG 1 cut(s) 66
BstSLI GKGCMC 1 cut(s) 405
BstSNI TACGTA 1 cut(s) 259
BstV1I GCAGC 2 cut(s) 550, 574
BstXI CCANNNNNNTGG 1 cut(s) 135
BsuRI GGCC 1 cut(s) 558
BtsCI GGATG 2 cut(s) 87, 355
BtsIMutI CAGTG 3 cut(s) 35, 354, 456
Cac8I GCNNGC 1 cut(s) 560
CciI TCATGA 1 cut(s) 168
Cfr10I RCCGGY 1 cut(s) 554
Cfr13I GGNCC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 256
CviAII CATG 2 cut(s) 169, 307
CviJI RGCY 9 cut(s) 226, 269, 301, 416, 495, 541, 558, 565, 603
CviKI_1 RGCY 9 cut(s) 226, 269, 301, 416, 495, 541, 558, 565, 603
CviQI GTAC 1 cut(s) 256
DpnI GATC 2 cut(s) 173, 615
DpnII GATC 2 cut(s) 171, 613
EaeI YGGCCR 1 cut(s) 556
Eco105I TACGTA 1 cut(s) 259
Eco130I CCWWGG 1 cut(s) 484
Eco31I GGTCTC 2 cut(s) 144, 192
Eco47I GGWCC 1 cut(s) 47
EcoO109I RGGNCCY 1 cut(s) 47
EcoT14I CCWWGG 1 cut(s) 484
ErhI CCWWGG 1 cut(s) 484
Esp3I CGTCTC 1 cut(s) 506
FaeI CATG 2 cut(s) 172, 310
FaqI GGGAC 1 cut(s) 166
FatI CATG 2 cut(s) 168, 306
Fnu4HI GCNGC 2 cut(s) 539, 563
FokI GGATG 2 cut(s) 94, 342
Fsp4HI GCNGC 2 cut(s) 539, 563
GluI GCNGC 2 cut(s) 539, 563
GsuI CTGGAG 2 cut(s) 59, 432
HaeIII GGCC 1 cut(s) 558
HapII CCGG 3 cut(s) 471, 533, 555
Hin1II CATG 2 cut(s) 172, 310
HindIII AAGCTT 1 cut(s) 493
HinfI GANTC 2 cut(s) 388, 609
HpaII CCGG 3 cut(s) 471, 533, 555
HphI GGTGA 3 cut(s) 124, 437, 587
Hpy166II GTNNAC 1 cut(s) 403
Hpy188III TCNNGA 4 cut(s) 169, 191, 385, 533
Hpy8I GTNNAC 1 cut(s) 403
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4IV ACGT 2 cut(s) 208, 258
HpyCH4V TGCA 6 cut(s) 68, 206, 323, 403, 454, 479
HpyF10VI GCNNNNNNNGC 1 cut(s) 476
HpySE526I ACGT 2 cut(s) 208, 258
Hsp92II CATG 2 cut(s) 172, 310
Kpn2I TCCGGA 1 cut(s) 532
Kzo9I GATC 2 cut(s) 171, 613
LmnI GCTCC 3 cut(s) 95, 451, 535
Lsp1109I GCAGC 2 cut(s) 550, 574
LweI GCATC 1 cut(s) 72
MaeII ACGT 2 cut(s) 208, 258
MaeIII GTNAC 1 cut(s) 33
MalI GATC 2 cut(s) 173, 615
MboI GATC 2 cut(s) 171, 613
MboII GAAGA 3 cut(s) 242, 531, 609
MhlI GDGCHC 1 cut(s) 405
MluCI AATT 1 cut(s) 374
MlyI GAGTC 2 cut(s) 382, 603
MnlI CCTC 4 cut(s) 38, 369, 402, 421
MroI TCCGGA 1 cut(s) 532
MroXI GAANNNNTTC 1 cut(s) 242
MslI CAYNNNNRTG 1 cut(s) 173
MspI CCGG 3 cut(s) 471, 533, 555
Mva1269I GAATGC 2 cut(s) 448, 479
MwoI GCNNNNNNNGC 1 cut(s) 476
NdeII GATC 2 cut(s) 171, 613
NlaIII CATG 2 cut(s) 172, 310
NlaIV GGNNCC 2 cut(s) 49, 433
NmuCI GTSAC 1 cut(s) 33
NspI RCATGY 1 cut(s) 310
PagI TCATGA 1 cut(s) 168
PciI ACATGT 1 cut(s) 306
PctI GAATGC 2 cut(s) 448, 479
PdmI GAANNNNTTC 1 cut(s) 242
Pfl23II CGTACG 1 cut(s) 255
PkrI GCNGC 2 cut(s) 540, 564
Ple19I CGATCG 1 cut(s) 616
PleI GAGTC 2 cut(s) 382, 603
PpsI GAGTC 2 cut(s) 382, 603
Ppu21I YACGTR 2 cut(s) 209, 259
PpuMI RGGWCCY 1 cut(s) 47
PscI ACATGT 1 cut(s) 306
Psp5II RGGWCCY 1 cut(s) 47
PspLI CGTACG 1 cut(s) 255
PspN4I GGNNCC 2 cut(s) 49, 433
PspPI GGNCC 1 cut(s) 47
PspPPI RGGWCCY 1 cut(s) 47
PstI CTGCAG 1 cut(s) 70
PvuI CGATCG 1 cut(s) 616
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
RseI CAYNNNNRTG 1 cut(s) 173
SatI GCNGC 2 cut(s) 539, 563
Sau3AI GATC 2 cut(s) 171, 613
Sau96I GGNCC 1 cut(s) 47
SchI GAGTC 2 cut(s) 382, 603
SduI GDGCHC 1 cut(s) 405
SetI ASST 4 cut(s) 211, 261, 490, 497
SfaNI GCATC 1 cut(s) 72
SfcI CTRYAG 1 cut(s) 66
SinI GGWCC 1 cut(s) 47
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
SnaBI TACGTA 1 cut(s) 259
Sse9I AATT 1 cut(s) 374
StyI CCWWGG 1 cut(s) 484
TaaI ACNGT 1 cut(s) 349
TaiI ACGT 2 cut(s) 211, 261
TaqI TCGA 2 cut(s) 517, 612
TasI AATT 1 cut(s) 374
TscAI CASTG 3 cut(s) 42, 354, 456
TseFI GTSAC 1 cut(s) 33
TseI GCWGC 2 cut(s) 538, 562
Tsp45I GTSAC 1 cut(s) 33
TspDTI ATGAA 2 cut(s) 157, 344
TspGWI ACGGA 4 cut(s) 132, 243, 488, 522
TspRI CASTG 3 cut(s) 42, 354, 456
VneI GTGCAC 1 cut(s) 401
VpaK11BI GGWCC 1 cut(s) 47
XapI RAATTY 1 cut(s) 374
XceI RCATGY 1 cut(s) 310
XmnI GAANNNNTTC 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.