Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002096

Physical Location & Seq

Genomic Coordinates Forward (+)

64330973 .. 64333839

Gene Structure 2867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2034 bp

ATGGATACTCATGTAGTACATTCTCCTGTCGAAGGTGAAGATGAAGACCACCATGAGAAGAAGTCGGTTTTGAAGAAGGTGAAGGCGAAAGCGAGGAAGTTAAAGGAGACTATCACAGGGCATAGCCATCACGGCCATGAACACGAAGGCCATCATACTCCTGATGATCATGATCTGGATGAGGAAGATGACGAAGAGGTAGACGACCCAGAAGTTCATGGTGCACCGATTGGGAGGACTGATGCTCCTATGCAAGGAGACATTTTGAAAGTGCCTATGGTGAATTTCGGAGACACTAGAGCGGGGCATGATGAATATGATCCTGTAGTTCCAAGGGAGACATCTAATGTGCCTGGGCTACATGAAAATACAGGCCATGGTGCAACGACTAGGAGGACTGATGCTCCTGTGCAAGGAGGCATTCATTTTGGAGACACACACCATGAATATGATCCTGTAGTGCCAAGAGAGAGGACTAATGTGGGATTTAGTGGACCGGTGAGGGATTTTGTGCCTGGGCAAAATCGAACTACAACAGAGCATGAGGATCTTTTGGGAGGAGCAAGGACAAAACTGGCTGGTCCAACAACTGGACCTGCCCTTAAGCATGAAGAGCCAAAGGGATTGGTTGATGTAATTGGGGGAGATCCTCATGCGCCGCACAACACCCCTGTTTCTCCTCTTCCTCATCATGGAAATTACAATACTCTTACCATGGATGTTGACCCAGGTAAGACTTTTGGCTCCGGGCAAAGAGGGCTTTTAGGTCAGACCAGGGTCAAATTGGAGAAGACTGATGTATTAGGGGAAGGAACTCCTGTGCTACAGAGTACCCCGGTTTCTTCTCTTGCTCATGGAACTCACAGAAGTACAATGGACGTCTACCCAAGGCAGAAATCCAGGCAGGGAGGGCATTTAGGTCAGTCCAGGGTCAATTTGGACAGACCCAGAGGACTTGAGGAAGACCCTCATGCGCCTAAAGCCAATCCTCAAGCTTACACTCCTTCAAATTACGAGACCAAAGTCACTGATCCCACCAAATCTGGTGGTCAGGAAATTGGAGTCACACCAATACTTCATTCCTTCGATAAGATGAACCTCCACGGTGATGATCACCCATACTTGAAAAATGGTGCCAAACACAACCCGTCTACCGGAAGCCATGACCAATTCTCTCCTGATAAACCATCGAACCAGGGCAGCAGCTACACTGAAAAAATCTCATATGCCACTTCAGCCATTTCCGACAAAGCAATTTCGGCAAAGAATGTAGTTGCTTCCAAGTTGGGGTATGGCGGAAACGAGCCTGATCATGATGACTACTCGAGAGGCTATGTTACTGGTGCTGGGAAGTCTGGTTCATCACCTCGGAACAAAGTACTTGATCCCTCTACTAACCAATTCAGATCAGCAGAGACTCCACAAGTCCGAGGAACCATCAAACCGGACCATGACACCACAACTGATCAAAAGCCAGTCCACAAAGGCGGAAGCTACACTGAGAAGATTTCATCTGCCGGATCTGCCATTGCTGACAAGGCGATATCCGCAAAGAATGTTGTTGCGTCCAAGCTGGGATATGGGGCAAGAGATCAGGTGCATGACAGGGAAGATGTAACTCGCACTAACGTGCAGTCTGGGACAACAGCAGCGGATCAACATGGCAAGACGATTTCCTCTACAGTTGCGGAGAAGCTAACACCTGTGTATGAGAAGGTTGCCGGGGCAGGGACTTCTGTGATGTCCAAGGTTCAAGGTGGGAGTACTGTTAGTGCCGGGGTTGTTAATCAAGCCGGACAGGACAAAGGGGTGTCTGTGAAGGACTATTTTTCAGAGAAGCTGAGGCCCGGAGAGGAGGACAAAGCGCTTTCGGAGGTTATAAGTGAGACATTACACAAGCATAAGCCGGGTGTTAAGCAAGAGAAGACAGTGTACTTTGCTAGTTCTAGGCCCAAGGGGAAGGTGACGGAATCGGCGGAGGTGAGGCATACCGAGGGGAATGATCGAGATCAATTTTGTGGTGGACAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0007623 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0010150 GO:0010555 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0042538 GO:0043207 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048511 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0090693 GO:0097305 GO:0097306 GO:0099402 GO:1901700 GO:1901701 GO:1902074 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CAP160

Protein Analysis

677

Amino Acids

72.8

Weight (kDa)

6.19

Isoelectric Point (pI)

28.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTI65_LTI78_N	PF23403	16 - 78	1.2e-23	LTI65/LTI78 CAP160 N-terminal
LTI65_LTI78_NYQTKV	PF23402	310 - 369	2.7e-32	LTI65/LTI78 NYQTKV repeat
CAP160	PF07918	407 - 433	7.9e-14	CAP160 repeat
CAP160	PF07918	503 - 528	1.4e-13	CAP160 repeat
LTI65_PGEED	PF23399	601 - 631	7e-19	LTI65/LTI78 PGEED repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25580 AT4G25580 AT5G52300 AT5G52300 AT5G52310
fragaria_vesca	FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29480 FvH4_7g29491
malus_domestica	MD01G1201000.v1.1 MD07G1268800.v1.1
prunus_persica	Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1 Prupe.2G294400_v2.0.a1
pyrus_communis	pycom07g24640
rosa_chinensis	RchiOBHm_Chr1g0377291 RchiOBHm_Chr1g0377331
rosa_laevigata	RLG00000026530
rosa_multiflora	Rmu_co8507117.1_g000001 Rmu_sc0001944.1_g000005 Rmu_sc0017163.1_g000001 Rmu_sc0022060.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281320 Rroxscaffold_4G00281330
rosa_rugosa	Rorug01G0402700
rosa_samantha	Rh1AG420000 Rh1AG420500 Rh1BG379000 Rh1BG379100 Rh1BG379200 Rh1BG379300 Rh1CG393000 Rh1CG393100 Rh1CG393200 Rh1CG393300 Rh1DG409600 Rh1DG409700 Rh1DG409800 Rh1DG410300
rosa_wichuraiana	Rw1G036860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1880
AatII	GACGTC	1 cut(s)	882
Acc36I	ACCTGC	1 cut(s)	604
AccB1I	GGYRCC	1 cut(s)	1133
AccB7I	CCANNNNNTGG	1 cut(s)	590
AccBSI	CCGCTC	1 cut(s)	302
AccI	GTMKAC	3 cut(s)	201, 882, 1151
AciI	CCGC	8 cut(s)	302, 659, 1296, 1488, 1548, 1652, 1688, 1976
AclWI	GGATC	8 cut(s)	314, 446, 555, 641, 1025, 1379, 1528, 1662
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	283
AcuI	CTGAAG	1 cut(s)	1218
AcyI	GRCGYC	1 cut(s)	879
AfaI	GTAC	6 cut(s)	18, 832, 871, 1380, 1765, 1934
AfeI	AGCGCT	1 cut(s)	1866
AfiI	CCNNNNNNNGG	8 cut(s)	32, 254, 413, 590, 692, 1154, 1287, 1728
AflII	CTTAAG	1 cut(s)	602
AgeI	ACCGGT	1 cut(s)	496
AgsI	TTSAA	5 cut(s)	73, 268, 1008, 1126, 1754
AjnI	CCWGG	7 cut(s)	352, 514, 727, 773, 899, 926, 1194
AjuI	GAANNNNNNNTTGG	2 cut(s)	1063, 1095
AleI	CACNNNNGTG	1 cut(s)	1628
AloI	GAACNNNNNNTCC	2 cut(s)	1342, 1374
AluBI	AGCT	6 cut(s)	995, 1206, 1494, 1573, 1696, 1840
AluI	AGCT	6 cut(s)	995, 1206, 1494, 1573, 1696, 1840
Alw21I	GWGCWC	1 cut(s)	226
Alw26I	GTCTC	8 cut(s)	101, 252, 285, 332, 426, 1010, 1409, 1880
Alw44I	GTGCAC	1 cut(s)	222
AlwI	GGATC	8 cut(s)	314, 446, 555, 641, 1025, 1379, 1528, 1662
Ama87I	CYCGRG	1 cut(s)	1324
Aor51HI	AGCGCT	1 cut(s)	1866
AoxI	GGCC	5 cut(s)	133, 148, 373, 1844, 1949
ApaLI	GTGCAC	1 cut(s)	222
ApeKI	GCWGC	3 cut(s)	1200, 1203, 1649
ApoI	RAATTY	1 cut(s)	283
AsiGI	ACCGGT	1 cut(s)	496
AspLEI	GCGC	3 cut(s)	658, 976, 1867
AspS9I	GGNCC	6 cut(s)	494, 581, 593, 1447, 1845, 1950
AsuC2I	CCSGG	6 cut(s)	748, 836, 1723, 1777, 1848, 1908
AsuHPI	GGTGA	9 cut(s)	47, 91, 292, 511, 1106, 1118, 1356, 1975, 1993
AvaI	CYCGRG	1 cut(s)	1324
AvaII	GGWCC	4 cut(s)	494, 581, 593, 1447
BaeGI	GKGCMC	1 cut(s)	226
BaeI	ACNNNNGTAYC	1 cut(s)	30
BanI	GGYRCC	1 cut(s)	1133
BarI	GAAGNNNNNNTAC	2 cut(s)	1916, 1948
BbsI	GAAGAC	4 cut(s)	51, 797, 969, 1931
Bbv12I	GWGCWC	1 cut(s)	226
BbvCI	CCTCAGC	1 cut(s)	1841
BbvI	GCAGC	3 cut(s)	1212, 1215, 1661
BccI	CCATC	4 cut(s)	135, 159, 1195, 1445
BceAI	ACGGC	1 cut(s)	148
BciT130I	CCWGG	7 cut(s)	354, 516, 729, 775, 901, 928, 1196
BclI	TGATCA	4 cut(s)	166, 1111, 1309, 1465
BcnI	CCSGG	6 cut(s)	748, 836, 1723, 1777, 1848, 1908
BcoDI	GTCTC	8 cut(s)	101, 252, 285, 332, 426, 1010, 1409, 1880
BfaI	CTAG	4 cut(s)	297, 390, 1941, 1947
BfmI	CTRYAG	4 cut(s)	324, 456, 824, 1680
BfoI	RGCGCY	1 cut(s)	1868
BfrI	CTTAAG	1 cut(s)	602
BfuAI	ACCTGC	1 cut(s)	604
BglI	GCCNNNNNGGC	1 cut(s)	132
BisI	GCNGC	4 cut(s)	659, 1201, 1204, 1650
BlsI	GCNGC	4 cut(s)	660, 1202, 1205, 1651
BmcAI	AGTACT	2 cut(s)	1380, 1765
Bme18I	GGWCC	4 cut(s)	494, 581, 593, 1447
BmeT110I	CYCGRG	1 cut(s)	1324
BmgT120I	GGNCC	6 cut(s)	494, 581, 593, 1447, 1845, 1950
BmiI	GGNNCC	3 cut(s)	745, 1135, 1435
BmsI	GCATC	2 cut(s)	232, 391
BoxI	GACNNNNGTC	2 cut(s)	776, 1022
BpiI	GAAGAC	4 cut(s)	51, 797, 969, 1931
Bpu10I	CCTNAGC	1 cut(s)	1841
BpuEI	CTTGAG	2 cut(s)	975, 977
BpuMI	CCSGG	6 cut(s)	748, 836, 1723, 1777, 1848, 1908
BsaBI	GATNNNNATC	2 cut(s)	171, 2007
BsaHI	GRCGYC	1 cut(s)	879
BsaI	GGTCTC	1 cut(s)	1010
BsaWI	WCCGGW	3 cut(s)	496, 1154, 1444
BsaXI	ACNNNNNCTCC	4 cut(s)	229, 259, 388, 418
Bsc4I	CCNNNNNNNGG	8 cut(s)	32, 254, 413, 590, 692, 1154, 1287, 1728
Bse118I	RCCGGY	1 cut(s)	496
Bse1I	ACTGG	4 cut(s)	579, 595, 1345, 1475
Bse3DI	GCAATG	1 cut(s)	1527
Bse8I	GATNNNNATC	2 cut(s)	171, 2007
BseBI	CCWGG	7 cut(s)	354, 516, 729, 775, 901, 928, 1196
BseGI	GGATG	2 cut(s)	184, 724
BseJI	GATNNNNATC	2 cut(s)	171, 2007
BseLI	CCNNNNNNNGG	8 cut(s)	32, 254, 413, 590, 692, 1154, 1287, 1728
BseMI	GCAATG	1 cut(s)	1527
BseMII	CTCAG	2 cut(s)	1491, 1832
BseNI	ACTGG	4 cut(s)	579, 595, 1345, 1475
BseRI	GAGGAG	3 cut(s)	573, 669, 1868
BseSI	GKGCMC	1 cut(s)	226
BseXI	GCAGC	3 cut(s)	1212, 1215, 1661
BseYI	CCCAGC	2 cut(s)	1346, 1573
BsgI	GTGCAG	1 cut(s)	1652
BshFI	GGCC	5 cut(s)	135, 150, 375, 1846, 1951
BshNI	GGYRCC	1 cut(s)	1133
BshTI	ACCGGT	1 cut(s)	496
BsiHKAI	GWGCWC	1 cut(s)	226
BsiHKCI	CYCGRG	1 cut(s)	1324
BslFI	GGGAC	2 cut(s)	1654, 1744
BslI	CCNNNNNNNGG	8 cut(s)	32, 254, 413, 590, 692, 1154, 1287, 1728
BsmAI	GTCTC	8 cut(s)	101, 252, 285, 332, 426, 1010, 1409, 1880
BsmFI	GGGAC	2 cut(s)	1654, 1744
BsmI	GAATGC	1 cut(s)	420
BsnI	GGCC	5 cut(s)	135, 150, 375, 1846, 1951
Bso31I	GGTCTC	1 cut(s)	1010
BsoBI	CYCGRG	1 cut(s)	1324
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp19I	CCATGG	2 cut(s)	376, 714
BspACI	CCGC	8 cut(s)	302, 659, 1296, 1488, 1548, 1652, 1688, 1976
BspANI	GGCC	5 cut(s)	135, 150, 375, 1846, 1951
BspCNI	CTCAG	2 cut(s)	1492, 1833
BspHI	TCATGA	2 cut(s)	169, 1312
BspLI	GGNNCC	3 cut(s)	745, 1135, 1435
BspMI	ACCTGC	1 cut(s)	604
BspPI	GGATC	8 cut(s)	314, 446, 555, 641, 1025, 1379, 1528, 1662
BspQI	GCTCTTC	1 cut(s)	606
BspT107I	GGYRCC	1 cut(s)	1133
BspTI	CTTAAG	1 cut(s)	602
BspTNI	GGTCTC	1 cut(s)	1010
BsrBI	CCGCTC	1 cut(s)	302
BsrDI	GCAATG	1 cut(s)	1527
BsrFI	RCCGGY	1 cut(s)	496
BsrI	ACTGG	4 cut(s)	579, 595, 1345, 1475
BssAI	RCCGGY	1 cut(s)	496
BssNI	GRCGYC	1 cut(s)	879
BssT1I	CCWWGG	6 cut(s)	332, 376, 714, 887, 1746, 1953
Bst2UI	CCWGG	7 cut(s)	354, 516, 729, 775, 901, 928, 1196
Bst4CI	ACNGT	4 cut(s)	1106, 1684, 1768, 1930
Bst6I	CTCTTC	3 cut(s)	189, 606, 687
BstACI	GRCGYC	1 cut(s)	879
BstAFI	CTTAAG	1 cut(s)	602
BstDEI	CTNAG	2 cut(s)	1500, 1841
BstDSI	CCRYGG	3 cut(s)	376, 714, 1102
BstENI	CCTNNNNNAGG	3 cut(s)	30, 252, 411
BstF5I	GGATG	2 cut(s)	184, 724
BstH2I	RGCGCY	1 cut(s)	1868
BstHHI	GCGC	3 cut(s)	658, 976, 1867
BstMAI	GTCTC	8 cut(s)	101, 252, 285, 332, 426, 1010, 1409, 1880
BstNI	CCWGG	7 cut(s)	354, 516, 729, 775, 901, 928, 1196
BstPAI	GACNNNNGTC	2 cut(s)	776, 1022
BstSFI	CTRYAG	4 cut(s)	324, 456, 824, 1680
BstSLI	GKGCMC	1 cut(s)	226
BstV1I	GCAGC	3 cut(s)	1212, 1215, 1661
BstV2I	GAAGAC	4 cut(s)	51, 797, 969, 1931
BstX2I	RGATCY	3 cut(s)	547, 646, 1520
BstYI	RGATCY	3 cut(s)	547, 646, 1520
BsuRI	GGCC	5 cut(s)	135, 150, 375, 1846, 1951
BtgI	CCRYGG	3 cut(s)	376, 714, 1102
BtsCI	GGATG	2 cut(s)	184, 724
BtsIMutI	CAGTG	4 cut(s)	1026, 1209, 1497, 1935
BveI	ACCTGC	1 cut(s)	604
CciI	TCATGA	2 cut(s)	169, 1312
CfoI	GCGC	3 cut(s)	658, 976, 1867
Cfr10I	RCCGGY	1 cut(s)	496
Cfr13I	GGNCC	6 cut(s)	494, 581, 593, 1447, 1845, 1950
CseI	GACGC	1 cut(s)	1554
Csp6I	GTAC	6 cut(s)	17, 831, 870, 1379, 1764, 1933
CspAI	ACCGGT	1 cut(s)	496
CspCI	CAANNNNNGTGG	2 cut(s)	1027, 1062
CviQI	GTAC	6 cut(s)	17, 831, 870, 1379, 1764, 1933
DdeI	CTNAG	2 cut(s)	1500, 1841
EaeI	YGGCCR	1 cut(s)	133
Eam1104I	CTCTTC	3 cut(s)	189, 606, 687
EarI	CTCTTC	3 cut(s)	189, 606, 687
EciI	GGCGGA	3 cut(s)	1311, 1503, 1991
Eco130I	CCWWGG	6 cut(s)	332, 376, 714, 887, 1746, 1953
Eco31I	GGTCTC	1 cut(s)	1010
Eco32I	GATATC	1 cut(s)	1545
Eco47I	GGWCC	4 cut(s)	494, 581, 593, 1447
Eco47III	AGCGCT	1 cut(s)	1866
Eco57I	CTGAAG	1 cut(s)	1218
Eco88I	CYCGRG	1 cut(s)	1324
EcoNI	CCTNNNNNAGG	3 cut(s)	30, 252, 411
EcoRII	CCWGG	7 cut(s)	352, 514, 727, 773, 899, 926, 1194
EcoRV	GATATC	1 cut(s)	1545
EcoT14I	CCWWGG	6 cut(s)	332, 376, 714, 887, 1746, 1953
ErhI	CCWWGG	6 cut(s)	332, 376, 714, 887, 1746, 1953
FaqI	GGGAC	2 cut(s)	1654, 1744
FauI	CCCGC	1 cut(s)	295
FauNDI	CATATG	1 cut(s)	1225
FbaI	TGATCA	4 cut(s)	166, 1111, 1309, 1465
FblI	GTMKAC	3 cut(s)	201, 882, 1151
Fnu4HI	GCNGC	4 cut(s)	659, 1201, 1204, 1650
FokI	GGATG	2 cut(s)	191, 731
Fsp4HI	GCNGC	4 cut(s)	659, 1201, 1204, 1650
FspBI	CTAG	4 cut(s)	297, 390, 1941, 1947
GlaI	GCGC	3 cut(s)	657, 975, 1866
GluI	GCNGC	4 cut(s)	659, 1201, 1204, 1650
GsaI	CCCAGC	2 cut(s)	1350, 1577
HaeII	RGCGCY	1 cut(s)	1868
HaeIII	GGCC	5 cut(s)	135, 150, 375, 1846, 1951
HgaI	GACGC	1 cut(s)	1554
HhaI	GCGC	3 cut(s)	658, 976, 1867
Hin1I	GRCGYC	1 cut(s)	879
Hin6I	GCGC	3 cut(s)	656, 974, 1865
HinP1I	GCGC	3 cut(s)	656, 974, 1865
HincII	GTYRAC	1 cut(s)	724
HindII	GTYRAC	1 cut(s)	724
HindIII	AAGCTT	1 cut(s)	993
HinfI	GANTC	3 cut(s)	1062, 1417, 1970
HphI	GGTGA	9 cut(s)	47, 91, 292, 511, 1106, 1118, 1356, 1975, 1993
Hpy166II	GTNNAC	9 cut(s)	202, 224, 494, 724, 883, 1152, 1480, 1933, 2024
Hpy188I	TCNGA	8 cut(s)	290, 771, 1246, 1371, 1406, 1430, 1834, 1873
Hpy188III	TCNNGA	8 cut(s)	161, 170, 176, 1052, 1178, 1313, 1326, 2006
Hpy8I	GTNNAC	9 cut(s)	202, 224, 494, 724, 883, 1152, 1480, 1933, 2024
HpyCH4III	ACNGT	4 cut(s)	1106, 1684, 1768, 1930
HpyCH4IV	ACGT	2 cut(s)	879, 1629
HpyCH4V	TGCA	6 cut(s)	224, 253, 383, 412, 1600, 1633
HpyF3I	CTNAG	2 cut(s)	1500, 1841
HpySE526I	ACGT	2 cut(s)	879, 1629
Hsp92I	GRCGYC	1 cut(s)	879
HspAI	GCGC	3 cut(s)	656, 974, 1865
Ksp22I	TGATCA	4 cut(s)	166, 1111, 1309, 1465
LguI	GCTCTTC	1 cut(s)	606
LmnI	GCTCC	4 cut(s)	250, 409, 560, 749
Lsp1109I	GCAGC	3 cut(s)	1212, 1215, 1661
LweI	GCATC	2 cut(s)	232, 391
MaeI	CTAG	4 cut(s)	297, 390, 1941, 1947
MaeII	ACGT	2 cut(s)	879, 1629
MaeIII	GTNAC	5 cut(s)	1024, 1063, 1336, 1615, 1963
MbiI	CCGCTC	1 cut(s)	302
MflI	RGATCY	3 cut(s)	547, 646, 1520
MhlI	GDGCHC	1 cut(s)	226
MlyI	GAGTC	2 cut(s)	1071, 1411
MmeI	TCCRAC	2 cut(s)	608, 1269
MseI	TTAA	5 cut(s)	101, 603, 1785, 1914, 2032
MslI	CAYNNNNRTG	4 cut(s)	135, 447, 1107, 1628
MspA1I	CMGCKG	1 cut(s)	1652
MspCI	CTTAAG	1 cut(s)	602
Mva1269I	GAATGC	1 cut(s)	420
MvaI	CCWGG	7 cut(s)	354, 516, 729, 775, 901, 928, 1196
NciI	CCSGG	6 cut(s)	748, 836, 1723, 1777, 1848, 1908
NcoI	CCATGG	2 cut(s)	376, 714
NdeI	CATATG	1 cut(s)	1225
NlaIV	GGNNCC	3 cut(s)	745, 1135, 1435
NmuCI	GTSAC	3 cut(s)	1024, 1063, 1963
OliI	CACNNNNGTG	1 cut(s)	1628
PaeR7I	CTCGAG	1 cut(s)	1324
PagI	TCATGA	2 cut(s)	169, 1312
PciSI	GCTCTTC	1 cut(s)	606
PctI	GAATGC	1 cut(s)	420
PfeI	GAWTC	1 cut(s)	1970
PflMI	CCANNNNNTGG	1 cut(s)	590
PinAI	ACCGGT	1 cut(s)	496
PkrI	GCNGC	4 cut(s)	660, 1202, 1205, 1651
PleI	GAGTC	2 cut(s)	1070, 1411
PpsI	GAGTC	2 cut(s)	1070, 1411
PshAI	GACNNNNGTC	2 cut(s)	776, 1022
PsiI	TTATAA	1 cut(s)	1880
Psp6I	CCWGG	7 cut(s)	352, 514, 727, 773, 899, 926, 1194
PspFI	CCCAGC	2 cut(s)	1346, 1573
PspGI	CCWGG	7 cut(s)	352, 514, 727, 773, 899, 926, 1194
PspN4I	GGNNCC	3 cut(s)	745, 1135, 1435
PspPI	GGNCC	6 cut(s)	494, 581, 593, 1447, 1845, 1950
PsuI	RGATCY	3 cut(s)	547, 646, 1520
RsaI	GTAC	6 cut(s)	18, 832, 871, 1380, 1765, 1934
RsaNI	GTAC	6 cut(s)	17, 831, 870, 1379, 1764, 1933
RseI	CAYNNNNRTG	4 cut(s)	135, 447, 1107, 1628
SapI	GCTCTTC	1 cut(s)	606
SaqAI	TTAA	5 cut(s)	101, 603, 1785, 1914, 2032
SatI	GCNGC	4 cut(s)	659, 1201, 1204, 1650
Sau96I	GGNCC	6 cut(s)	494, 581, 593, 1447, 1845, 1950
ScaI	AGTACT	2 cut(s)	1380, 1765
SchI	GAGTC	2 cut(s)	1071, 1411
SduI	GDGCHC	1 cut(s)	226
SfaNI	GCATC	2 cut(s)	232, 391
SfcI	CTRYAG	4 cut(s)	324, 456, 824, 1680
Sfr274I	CTCGAG	1 cut(s)	1324
SinI	GGWCC	4 cut(s)	494, 581, 593, 1447
SlaI	CTCGAG	1 cut(s)	1324
SmiMI	CAYNNNNRTG	4 cut(s)	135, 447, 1107, 1628
SmlI	CTYRAG	4 cut(s)	602, 956, 990, 1324
SmoI	CTYRAG	4 cut(s)	602, 956, 990, 1324
SsiI	CCGC	8 cut(s)	302, 659, 1296, 1488, 1548, 1652, 1688, 1976
SspMI	CTAG	4 cut(s)	297, 390, 1941, 1947
StyI	CCWWGG	6 cut(s)	332, 376, 714, 887, 1746, 1953
TaaI	ACNGT	4 cut(s)	1106, 1684, 1768, 1930
TaiI	ACGT	2 cut(s)	882, 1632
TaqI	TCGA	6 cut(s)	30, 526, 1086, 1190, 1325, 2005
TatI	WGTACW	5 cut(s)	16, 869, 1378, 1763, 1932
TauI	GCSGC	1 cut(s)	661
TfiI	GAWTC	1 cut(s)	1970
Tru1I	TTAA	5 cut(s)	101, 603, 1785, 1914, 2032
Tru9I	TTAA	5 cut(s)	101, 603, 1785, 1914, 2032
TscAI	CASTG	4 cut(s)	1033, 1216, 1504, 1935
TseFI	GTSAC	3 cut(s)	1024, 1063, 1963
TseI	GCWGC	3 cut(s)	1200, 1203, 1649
Tsp45I	GTSAC	3 cut(s)	1024, 1063, 1963
TspGWI	ACGGA	1 cut(s)	1982
TspRI	CASTG	4 cut(s)	1033, 1216, 1504, 1935
Van91I	CCANNNNNTGG	1 cut(s)	590
Vha464I	CTTAAG	1 cut(s)	602
VneI	GTGCAC	1 cut(s)	222
VpaK11BI	GGWCC	4 cut(s)	494, 581, 593, 1447
XagI	CCTNNNNNAGG	3 cut(s)	30, 252, 411
XapI	RAATTY	1 cut(s)	283
XcmI	CCANNNNNNNNNTGG	2 cut(s)	781, 934
XhoI	CTCGAG	1 cut(s)	1324
XmiI	GTMKAC	3 cut(s)	201, 882, 1151
XspI	CTAG	4 cut(s)	297, 390, 1941, 1947
ZraI	GACGTC	1 cut(s)	880
ZrmI	AGTACT	2 cut(s)	1380, 1765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.