Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004906

Physical Location & Seq

Genomic Coordinates Forward (+)

67441253 .. 67446063

Gene Structure 4811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAAGATGATAACTGGACACCAAACTAGCAGATTTTTACAAATTGTTGGATGCAATATTCACATGAATTATTTCTTTGATTGCAGAAAATTTGCAGCAGCCAATCTTTTGGTCTCAAATATGAGTGGACGATTTTCTCGCACAATTTATGTCGGCAACCTACCCTCAGATATAAGAGAACGGGAGGTTGAAGATTTATTCTACAAGTATGGCCGCATTTTGGATATTGAATTGAAGGTTCCACCTCGCCCTCCATGCTATAGTTTTGTTGAGTTTGAGAGTTCTCGGGATGCAGAAGATGCAATTAGGGGTCGTGATGGGTACAACTTTGATGGCTGTCGTTTAAGGGTTGAGCTTGCCCATGGTGGTAGTAGGGGCCCGCCACCTAGTGATCGTCGTGGTGGATATGGTGGAGGCAGTAGCAGCAGAGGAGGCAGCAGTGGGGGTCGATTTGGTGTCTCACGTCATTCTGAATTTCGAGTTATTGTTCGTGGCCTCCCTTCTTCTGCTTCATGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTGTGTTTTGCCGAGGTTTGTCGTGACAGTGAAGGGACTTATGGCTTGGTTGATTATAACAATTATGATGACATGAAATATGCTGTTCGGGAACTTCATGATACTGAATTTAAAAATCCTTGGGCAAGATCTTATATTCGGGTTAAAGTGTATGAAAGCAGCAGTCCCTCTAGGAGTCGGAGCAGAAGCCGTAGCAGAAGCCGTAGTGTAAGAAGGAATAAGAGCAATTCTTTGGAGCGATCTGTTTCTAGATCAGTTTCAAGATCTAGGTCTGCATCTCCGGTCAAACCTTCCAGGCCAAGATCAATGTCAAGATCAAGGTCAGGGTCTCCCCGCCCGGCGCGGTCAGATAGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0031974 GO:0031981 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 ko04657 ko05168 map03040 map04657 map05168

Pfam Domains

Protein Families

RRM_1

Protein Analysis

303

Amino Acids

34.22

Weight (kDa)

10.2

Isoelectric Point (pI)

78.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	49 - 116	1.9e-17	RNA recognition motif
RRM_1	PF00076	161 - 223	1.5e-11	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004906)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430 AT3G49430
fragaria_vesca	FvH4_7g32850 FvH4_7g32850
malus_domestica	MD01G1227800.v1.1 MD01G1227900.v1.1 MD07G1298400.v1.1
prunus_persica	Prupe.2G318200_v2.0.a1
pyrus_communis	pycom01g23610 pycom07g27080
rosa_chinensis	RchiOBHm_Chr1g0382791
rosa_laevigata	RLG00000026159
rosa_multiflora	Rmu_sc0002242.1_g000001 Rmu_sc0003389.1_g000002
rosa_roxburghii	Rroxscaffold_4G00277900
rosa_rugosa	Rorug01G0435900.1 Rorug01G0436000 Rorug01G0436100 Rorug01G0436200 Rorug01G0436300
rosa_samantha	Rh1AG461200 Rh1BG417900 Rh1CG431700 Rh1DG450100
rosa_wichuraiana	Rw1G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	609
AccII	CGCG	1 cut(s)	895
AciI	CCGC	4 cut(s)	214, 380, 886, 895
AclWI	GGATC	1 cut(s)	537
AcoI	YGGCCR	1 cut(s)	211
AcsI	RAATTY	3 cut(s)	89, 473, 659
AdeI	CACNNNGTG	1 cut(s)	389
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	220
AgsI	TTSAA	5 cut(s)	191, 230, 235, 526, 813
AjiI	CACGTC	1 cut(s)	464
AjnI	CCWGG	1 cut(s)	845
AluBI	AGCT	2 cut(s)	355, 545
AluI	AGCT	2 cut(s)	355, 545
Alw26I	GTCTC	3 cut(s)	118, 463, 885
AlwI	GGATC	1 cut(s)	537
Ama87I	CYCGRG	1 cut(s)	285
AoxI	GGCC	4 cut(s)	211, 376, 493, 848
ApaI	GGGCCC	1 cut(s)	380
ApeKI	GCWGC	5 cut(s)	95, 98, 423, 435, 711
ApoI	RAATTY	3 cut(s)	89, 473, 659
Asp700I	GAANNNNTTC	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	895
AspS9I	GGNCC	2 cut(s)	376, 377
AsuC2I	CCSGG	1 cut(s)	890
AsuHPI	GGTGA	1 cut(s)	560
AvaI	CYCGRG	1 cut(s)	285
BaeGI	GKGCMC	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	380
BbvI	GCAGC	5 cut(s)	107, 110, 435, 447, 723
BccI	CCATC	2 cut(s)	311, 326
BceAI	ACGGC	2 cut(s)	726, 738
BciT130I	CCWGG	1 cut(s)	847
BcnI	CCSGG	1 cut(s)	890
BcoDI	GTCTC	3 cut(s)	118, 463, 885
BfaI	CTAG	5 cut(s)	27, 387, 723, 801, 819
BfmI	CTRYAG	1 cut(s)	259
BglII	AGATCT	2 cut(s)	680, 815
BisI	GCNGC	6 cut(s)	96, 99, 214, 424, 436, 712
BlsI	GCNGC	6 cut(s)	97, 100, 215, 425, 437, 713
Bme1390I	CCNGG	2 cut(s)	847, 890
BmeT110I	CYCGRG	1 cut(s)	285
BmgBI	CACGTC	1 cut(s)	464
BmgT120I	GGNCC	2 cut(s)	376, 377
BmiI	GGNNCC	3 cut(s)	240, 377, 378
BmrFI	CCNGG	2 cut(s)	847, 890
BmsI	GCATC	4 cut(s)	41, 280, 289, 836
BpuMI	CCSGG	1 cut(s)	890
BsaI	GGTCTC	2 cut(s)	118, 885
BsaJI	CCNNGG	3 cut(s)	361, 564, 671
BsaWI	WCCGGW	1 cut(s)	832
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse1I	ACTGG	1 cut(s)	19
BseBI	CCWGG	1 cut(s)	847
BseDI	CCNNGG	3 cut(s)	361, 564, 671
BseGI	GGATG	2 cut(s)	56, 295
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	19
BseRI	GAGGAG	1 cut(s)	444
BseSI	GKGCMC	1 cut(s)	380
BseXI	GCAGC	5 cut(s)	107, 110, 435, 447, 723
Bsh1236I	CGCG	1 cut(s)	895
BshFI	GGCC	4 cut(s)	213, 378, 495, 850
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	2 cut(s)	833, 890
BslFI	GGGAC	2 cut(s)	601, 702
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmAI	GTCTC	3 cut(s)	118, 463, 885
BsmFI	GGGAC	2 cut(s)	601, 702
BsnI	GGCC	4 cut(s)	213, 378, 495, 850
Bso31I	GGTCTC	2 cut(s)	118, 885
BsoBI	CYCGRG	1 cut(s)	285
Bsp120I	GGGCCC	1 cut(s)	376
Bsp1286I	GDGCHC	1 cut(s)	380
Bsp143I	GATC	8 cut(s)	391, 529, 680, 791, 803, 815, 854, 866
Bsp19I	CCATGG	1 cut(s)	361
BspACI	CCGC	4 cut(s)	214, 380, 886, 895
BspANI	GGCC	4 cut(s)	213, 378, 495, 850
BspCNI	CTCAG	1 cut(s)	179
BspFNI	CGCG	1 cut(s)	895
BspHI	TCATGA	1 cut(s)	649
BspLI	GGNNCC	3 cut(s)	240, 377, 378
BspPI	GGATC	1 cut(s)	537
BspTNI	GGTCTC	2 cut(s)	118, 885
BsrI	ACTGG	1 cut(s)	19
BssECI	CCNNGG	3 cut(s)	361, 564, 671
BssMI	GATC	8 cut(s)	391, 529, 680, 791, 803, 815, 854, 866
BssT1I	CCWWGG	2 cut(s)	361, 671
Bst2UI	CCWGG	1 cut(s)	847
Bst4CI	ACNGT	1 cut(s)	581
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstC8I	GCNNGC	2 cut(s)	357, 380
BstDEI	CTNAG	1 cut(s)	166
BstDSI	CCRYGG	1 cut(s)	361
BstF5I	GGATG	2 cut(s)	56, 295
BstFNI	CGCG	1 cut(s)	895
BstHHI	GCGC	1 cut(s)	895
BstKTI	GATC	8 cut(s)	394, 532, 683, 794, 806, 818, 857, 869
BstMAI	GTCTC	3 cut(s)	118, 463, 885
BstMBI	GATC	8 cut(s)	391, 529, 680, 791, 803, 815, 854, 866
BstMWI	GCNNNNNNNGC	4 cut(s)	255, 299, 423, 432
BstNI	CCWGG	1 cut(s)	847
BstSCI	CCNGG	2 cut(s)	845, 888
BstSFI	CTRYAG	1 cut(s)	259
BstSLI	GKGCMC	1 cut(s)	380
BstUI	CGCG	1 cut(s)	895
BstV1I	GCAGC	5 cut(s)	107, 110, 435, 447, 723
BstX2I	RGATCY	2 cut(s)	680, 815
BstXI	CCANNNNNNTGG	1 cut(s)	109
BstYI	RGATCY	2 cut(s)	680, 815
BsuRI	GGCC	4 cut(s)	213, 378, 495, 850
BtgI	CCRYGG	1 cut(s)	361
BtrI	CACGTC	1 cut(s)	464
BtsCI	GGATG	2 cut(s)	56, 295
BtsI	GCAGTG	1 cut(s)	445
BtsIMutI	CAGTG	2 cut(s)	445, 586
Cac8I	GCNNGC	2 cut(s)	357, 380
CciI	TCATGA	1 cut(s)	649
CfoI	GCGC	1 cut(s)	895
Cfr13I	GGNCC	2 cut(s)	376, 377
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	6 cut(s)	64, 255, 362, 513, 625, 650
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	1 cut(s)	166
DpnI	GATC	8 cut(s)	393, 531, 682, 793, 805, 817, 856, 868
DpnII	GATC	8 cut(s)	391, 529, 680, 791, 803, 815, 854, 866
DraI	TTTAAA	1 cut(s)	664
DraIII	CACNNNGTG	1 cut(s)	389
EaeI	YGGCCR	1 cut(s)	211
Eco130I	CCWWGG	2 cut(s)	361, 671
Eco24I	GRGCYC	1 cut(s)	380
Eco31I	GGTCTC	2 cut(s)	118, 885
Eco88I	CYCGRG	1 cut(s)	285
EcoO109I	RGGNCCY	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	845
EcoT14I	CCWWGG	2 cut(s)	361, 671
EcoT38I	GRGCYC	1 cut(s)	380
ErhI	CCWWGG	2 cut(s)	361, 671
FaeI	CATG	6 cut(s)	67, 258, 365, 516, 628, 653
FaqI	GGGAC	2 cut(s)	601, 702
FatI	CATG	6 cut(s)	63, 254, 361, 512, 624, 649
FauI	CCCGC	2 cut(s)	387, 893
FauNDI	CATATG	1 cut(s)	534
Fnu4HI	GCNGC	6 cut(s)	96, 99, 214, 424, 436, 712
FokI	GGATG	2 cut(s)	63, 302
FriOI	GRGCYC	1 cut(s)	380
Fsp4HI	GCNGC	6 cut(s)	96, 99, 214, 424, 436, 712
FspBI	CTAG	5 cut(s)	27, 387, 723, 801, 819
GlaI	GCGC	1 cut(s)	894
GluI	GCNGC	6 cut(s)	96, 99, 214, 424, 436, 712
HaeIII	GGCC	4 cut(s)	213, 378, 495, 850
HapII	CCGG	2 cut(s)	833, 890
HhaI	GCGC	1 cut(s)	895
Hin1II	CATG	6 cut(s)	67, 258, 365, 516, 628, 653
Hin6I	GCGC	1 cut(s)	893
HinP1I	GCGC	1 cut(s)	893
HinfI	GANTC	1 cut(s)	727
HpaII	CCGG	2 cut(s)	833, 890
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	4 cut(s)	169, 472, 732, 901
Hpy188III	TCNNGA	8 cut(s)	287, 314, 575, 641, 650, 801, 813, 864
Hpy8I	GTNNAC	1 cut(s)	128
Hpy99I	CGWCG	1 cut(s)	399
HpyAV	CCTTC	6 cut(s)	229, 510, 520, 578, 759, 852
HpyCH4III	ACNGT	1 cut(s)	581
HpyCH4IV	ACGT	1 cut(s)	463
HpyCH4V	TGCA	6 cut(s)	54, 84, 95, 293, 302, 827
HpyF10VI	GCNNNNNNNGC	4 cut(s)	255, 299, 423, 432
HpyF3I	CTNAG	1 cut(s)	166
HpySE526I	ACGT	1 cut(s)	463
Hsp92II	CATG	6 cut(s)	67, 258, 365, 516, 628, 653
HspAI	GCGC	1 cut(s)	893
Kzo9I	GATC	8 cut(s)	391, 529, 680, 791, 803, 815, 854, 866
LmnI	GCTCC	2 cut(s)	732, 787
LpnPI	CCDG	6 cut(s)	531, 832, 846, 859, 861, 903
Lsp1109I	GCAGC	5 cut(s)	107, 110, 435, 447, 723
LweI	GCATC	4 cut(s)	41, 280, 289, 836
MaeI	CTAG	5 cut(s)	27, 387, 723, 801, 819
MaeII	ACGT	1 cut(s)	463
MaeIII	GTNAC	1 cut(s)	575
MalI	GATC	8 cut(s)	393, 531, 682, 793, 805, 817, 856, 868
MboI	GATC	8 cut(s)	391, 529, 680, 791, 803, 815, 854, 866
MboII	GAAGA	4 cut(s)	16, 203, 308, 495
MflI	RGATCY	2 cut(s)	680, 815
MhlI	GDGCHC	1 cut(s)	380
MlyI	GAGTC	1 cut(s)	736
MmeI	TCCRAC	2 cut(s)	28, 710
MroXI	GAANNNNTTC	1 cut(s)	71
MseI	TTAA	3 cut(s)	344, 663, 696
MspI	CCGG	2 cut(s)	833, 890
MspR9I	CCNGG	2 cut(s)	847, 890
MvaI	CCWGG	1 cut(s)	847
MvnI	CGCG	1 cut(s)	895
MwoI	GCNNNNNNNGC	4 cut(s)	255, 299, 423, 432
NciI	CCSGG	1 cut(s)	890
NcoI	CCATGG	1 cut(s)	361
NdeI	CATATG	1 cut(s)	534
NdeII	GATC	8 cut(s)	391, 529, 680, 791, 803, 815, 854, 866
NlaIII	CATG	6 cut(s)	67, 258, 365, 516, 628, 653
NlaIV	GGNNCC	3 cut(s)	240, 377, 378
NmeAIII	GCCGAG	1 cut(s)	589
NmuCI	GTSAC	1 cut(s)	575
PagI	TCATGA	1 cut(s)	649
PdmI	GAANNNNTTC	1 cut(s)	71
PkrI	GCNGC	6 cut(s)	97, 100, 215, 425, 437, 713
PleI	GAGTC	1 cut(s)	735
PpsI	GAGTC	1 cut(s)	735
PsiI	TTATAA	1 cut(s)	609
Psp6I	CCWGG	1 cut(s)	845
PspGI	CCWGG	1 cut(s)	845
PspN4I	GGNNCC	3 cut(s)	240, 377, 378
PspOMI	GGGCCC	1 cut(s)	376
PspPI	GGNCC	2 cut(s)	376, 377
PsuI	RGATCY	2 cut(s)	680, 815
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SaqAI	TTAA	3 cut(s)	344, 663, 696
SatI	GCNGC	6 cut(s)	96, 99, 214, 424, 436, 712
Sau3AI	GATC	8 cut(s)	391, 529, 680, 791, 803, 815, 854, 866
Sau96I	GGNCC	2 cut(s)	376, 377
SchI	GAGTC	1 cut(s)	736
ScrFI	CCNGG	2 cut(s)	847, 890
SduI	GDGCHC	1 cut(s)	380
SfaNI	GCATC	4 cut(s)	41, 280, 289, 836
SfcI	CTRYAG	1 cut(s)	259
SsiI	CCGC	4 cut(s)	214, 380, 886, 895
SspI	AATATT	1 cut(s)	58
SspMI	CTAG	5 cut(s)	27, 387, 723, 801, 819
StyD4I	CCNGG	2 cut(s)	845, 888
StyI	CCWWGG	2 cut(s)	361, 671
TaaI	ACNGT	1 cut(s)	581
TaiI	ACGT	1 cut(s)	466
TaqI	TCGA	2 cut(s)	448, 478
TauI	GCSGC	1 cut(s)	216
Tru1I	TTAA	3 cut(s)	344, 663, 696
Tru9I	TTAA	3 cut(s)	344, 663, 696
TscAI	CASTG	2 cut(s)	445, 586
TseFI	GTSAC	1 cut(s)	575
TseI	GCWGC	5 cut(s)	95, 98, 423, 435, 711
Tsp45I	GTSAC	1 cut(s)	575
TspDTI	ATGAA	6 cut(s)	17, 80, 501, 638, 641, 720
TspRI	CASTG	2 cut(s)	445, 586
XapI	RAATTY	3 cut(s)	89, 473, 659
XbaI	TCTAGA	1 cut(s)	800
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	5 cut(s)	27, 387, 723, 801, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.