RchiOBHm_Chr1g0318691

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0009734
Physical Location & Seq
Reverse (-)
6228638 .. 6231088
2451 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54895

Sequence Viewer

Length: 297 bp
ATGTGCATGAGCCTAGGTCCGCCATCATCATCCCGGTGCACGAGTTCGAGATCCTCTCTTGTGATTCGAACAAGTACGACGACTGCGTCATCGCCATCGCCATCGCCTTCGTTGACAAATCGATCAAGGTTTGGGACGTCAAATCCATTGGAGCTCCGATTTCGGTGCTCAACGCCACAGCTACCCCGTCAAAAAAGTCAAATTCTCACCTTACCGGCAAAGCTTGATGATGTCGTGCTCGTACAACTTGTCGGCGTACTTGTCATTGCTTCAATACAAGTACTAGCAAGAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.44

Weight (kDa)

11.48

Isoelectric Point (pI)

77.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 85
AatII GACGTC 1 cut(s) 140
AciI CCGC 1 cut(s) 20
AclWI GGATC 1 cut(s) 45
AcsI RAATTY 1 cut(s) 201
AcyI GRCGYC 1 cut(s) 137
AfaI GTAC 4 cut(s) 76, 243, 258, 282
AgsI TTSAA 1 cut(s) 273
AluBI AGCT 3 cut(s) 154, 181, 223
AluI AGCT 3 cut(s) 154, 181, 223
Alw21I GWGCWC 4 cut(s) 41, 156, 170, 240
Alw44I GTGCAC 1 cut(s) 37
AlwI GGATC 1 cut(s) 45
ApaLI GTGCAC 1 cut(s) 37
ApoI RAATTY 1 cut(s) 201
AspA2I CCTAGG 1 cut(s) 13
AspS9I GGNCC 1 cut(s) 17
AsuC2I CCSGG 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 199
AsuII TTCGAA 1 cut(s) 67
AvaII GGWCC 1 cut(s) 17
AvrII CCTAGG 1 cut(s) 13
BaeGI GKGCMC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 156
BauI CACGAG 1 cut(s) 40
Bbv12I GWGCWC 4 cut(s) 41, 156, 170, 240
BccI CCATC 3 cut(s) 31, 103, 109
BcgI CGANNNNNNTGC 2 cut(s) 147, 181
BcnI CCSGG 1 cut(s) 34
BfaI CTAG 2 cut(s) 14, 284
BlnI CCTAGG 1 cut(s) 13
BmcAI AGTACT 1 cut(s) 282
Bme1390I CCNGG 1 cut(s) 34
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 17
BmrFI CCNGG 1 cut(s) 34
BplI GAGNNNNNCTC 2 cut(s) 40, 72
Bpu14I TTCGAA 1 cut(s) 67
BpuMI CCSGG 1 cut(s) 34
Bsa29I ATCGAT 1 cut(s) 121
BsaHI GRCGYC 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 13
Bse118I RCCGGY 1 cut(s) 214
Bse3DI GCAATG 1 cut(s) 264
BseCI ATCGAT 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 13
BseGI GGATG 1 cut(s) 29
BseMI GCAATG 1 cut(s) 264
BseSI GKGCMC 1 cut(s) 41
BshVI ATCGAT 1 cut(s) 121
BsiHKAI GWGCWC 4 cut(s) 41, 156, 170, 240
BsiSI CCGG 2 cut(s) 34, 215
BslFI GGGAC 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 148
Bsp119I TTCGAA 1 cut(s) 67
Bsp1286I GDGCHC 4 cut(s) 41, 156, 170, 240
Bsp143I GATC 2 cut(s) 50, 122
BspACI CCGC 1 cut(s) 20
BspDI ATCGAT 1 cut(s) 121
BspPI GGATC 1 cut(s) 45
BspT104I TTCGAA 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 264
BsrFI RCCGGY 1 cut(s) 214
BssAI RCCGGY 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 2 cut(s) 50, 122
BssNI GRCGYC 1 cut(s) 137
BssSI CACGAG 1 cut(s) 40
BssT1I CCWWGG 1 cut(s) 13
Bst2BI CACGAG 1 cut(s) 40
BstACI GRCGYC 1 cut(s) 137
BstBI TTCGAA 1 cut(s) 67
BstF5I GGATG 1 cut(s) 29
BstKTI GATC 2 cut(s) 53, 125
BstMBI GATC 2 cut(s) 50, 122
BstSCI CCNGG 1 cut(s) 32
BstSLI GKGCMC 1 cut(s) 41
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
Bsu15I ATCGAT 1 cut(s) 121
BsuTUI ATCGAT 1 cut(s) 121
BtgZI GCGATG 3 cut(s) 75, 81, 87
BtsCI GGATG 1 cut(s) 29
Cfr10I RCCGGY 1 cut(s) 214
Cfr13I GGNCC 1 cut(s) 17
ClaI ATCGAT 1 cut(s) 121
CseI GACGC 1 cut(s) 75
Csp6I GTAC 4 cut(s) 75, 242, 257, 281
CviAII CATG 1 cut(s) 7
CviJI RGCY 4 cut(s) 12, 154, 181, 223
CviKI_1 RGCY 4 cut(s) 12, 154, 181, 223
CviQI GTAC 4 cut(s) 75, 242, 257, 281
DpnI GATC 2 cut(s) 52, 124
DpnII GATC 2 cut(s) 50, 122
DrdI GACNNNNNNGTC 1 cut(s) 85
DseDI GACNNNNNNGTC 1 cut(s) 85
EciI GGCGGA 1 cut(s) 9
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 13
Eco24I GRGCYC 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 17
Eco53kI GAGCTC 1 cut(s) 154
EcoICRI GAGCTC 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 13
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 13
FaeI CATG 1 cut(s) 10
FaiI YATR 1 cut(s) 8
FaqI GGGAC 1 cut(s) 148
FatI CATG 1 cut(s) 6
FokI GGATG 1 cut(s) 16
FriOI GRGCYC 1 cut(s) 156
FspBI CTAG 2 cut(s) 14, 284
HapII CCGG 2 cut(s) 34, 215
HgaI GACGC 1 cut(s) 75
Hin1I GRCGYC 1 cut(s) 137
Hin1II CATG 1 cut(s) 10
HincII GTYRAC 1 cut(s) 114
HindII GTYRAC 1 cut(s) 114
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 1 cut(s) 64
HpaII CCGG 2 cut(s) 34, 215
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 2 cut(s) 39, 114
Hpy188I TCNGA 1 cut(s) 158
Hpy188III TCNNGA 1 cut(s) 48
Hpy8I GTNNAC 2 cut(s) 39, 114
Hpy99I CGWCG 1 cut(s) 82
HpyAV CCTTC 1 cut(s) 117
HpyCH4IV ACGT 1 cut(s) 137
HpyCH4V TGCA 2 cut(s) 6, 39
HpySE526I ACGT 1 cut(s) 137
Hsp92I GRCGYC 1 cut(s) 137
Hsp92II CATG 1 cut(s) 10
Kzo9I GATC 2 cut(s) 50, 122
LmnI GCTCC 2 cut(s) 151, 159
LpnPI CCDG 2 cut(s) 47, 228
MaeI CTAG 2 cut(s) 14, 284
MaeII ACGT 1 cut(s) 137
MalI GATC 2 cut(s) 52, 124
MboI GATC 2 cut(s) 50, 122
MflI RGATCY 1 cut(s) 50
MhlI GDGCHC 4 cut(s) 41, 156, 170, 240
MluCI AATT 1 cut(s) 201
MnlI CCTC 2 cut(s) 64, 284
MslI CAYNNNNRTG 1 cut(s) 34
MspI CCGG 2 cut(s) 34, 215
MspR9I CCNGG 1 cut(s) 34
NciI CCSGG 1 cut(s) 34
NdeII GATC 2 cut(s) 50, 122
NlaIII CATG 1 cut(s) 10
NspV TTCGAA 1 cut(s) 67
PcsI WCGNNNNNNNCGW 1 cut(s) 83
PfeI GAWTC 1 cut(s) 64
PflFI GACNNNGTC 1 cut(s) 85
Psp124BI GAGCTC 1 cut(s) 156
PspPI GGNCC 1 cut(s) 17
PsuI RGATCY 1 cut(s) 50
PsyI GACNNNGTC 1 cut(s) 85
RsaI GTAC 4 cut(s) 76, 243, 258, 282
RsaNI GTAC 4 cut(s) 75, 242, 257, 281
RseI CAYNNNNRTG 1 cut(s) 34
SacI GAGCTC 1 cut(s) 156
Sau3AI GATC 2 cut(s) 50, 122
Sau96I GGNCC 1 cut(s) 17
ScaI AGTACT 1 cut(s) 282
ScrFI CCNGG 1 cut(s) 34
SduI GDGCHC 4 cut(s) 41, 156, 170, 240
SetI ASST 7 cut(s) 19, 131, 140, 156, 183, 212, 225
SfuI TTCGAA 1 cut(s) 67
SinI GGWCC 1 cut(s) 17
SmiMI CAYNNNNRTG 1 cut(s) 34
Sse9I AATT 1 cut(s) 201
SsiI CCGC 1 cut(s) 20
SspMI CTAG 2 cut(s) 14, 284
SstI GAGCTC 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 32
StyI CCWWGG 1 cut(s) 13
TaiI ACGT 1 cut(s) 140
TaqI TCGA 3 cut(s) 47, 67, 121
TasI AATT 1 cut(s) 201
TatI WGTACW 1 cut(s) 280
TfiI GAWTC 1 cut(s) 64
Tth111I GACNNNGTC 1 cut(s) 85
VneI GTGCAC 1 cut(s) 37
VpaK11BI GGWCC 1 cut(s) 17
XapI RAATTY 1 cut(s) 201
XmaJI CCTAGG 1 cut(s) 13
XspI CTAG 2 cut(s) 14, 284
ZraI GACGTC 1 cut(s) 138
ZrmI AGTACT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.