Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0009734

Physical Location & Seq

Genomic Coordinates Forward (+)

53298318 .. 53299752

Gene Structure 1435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG306000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGATCATCCCGGCGCACGAGTTCGAGATCCTCTCTTGCGATTTGAACAAGTACGACGACTGCGTCATCGCCACCGCCTTCGTCGACAAATCGATCAAGGGTTCCGGTCCTCCCATTCGCTCTCAAAATGCCTTCAATTTTGCGATTCCCTCACTTGAAGAGTACCGATTTGCTAAGCAAGAGGATGAAGAGGTGCTGGTGCTGCATACGGATTTGGTCGAAGGTCCTCAGCCGATGGAAGTAGCTCAAGTGGAGCGGGCTAGTACAGTTGATAATCAGCCAGTGGAGGAGCCTCTAACCGTGAAATTGACTTGGACAATTGAGAGCTTGTCTAGGTTGAACACCAAAAAGCACTACTCTGACATGTTCATGGTTGGTGGTTATAAATTGTATTCTTCCCTTGACAATCATCGTATGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04068 ko05168 ko05169 ko05203 map04068 map05168 map05169 map05203

Pfam Domains

Protein Families

MATH UCH USP7_C2 USP7_ICP0_bdg

Protein Analysis

140

Amino Acids

15.91

Weight (kDa)

4.82

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009734)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318691 RchiOBHm_Chr4g0417811 RchiOBHm_Chr5g0056321
rosa_laevigata	RLG00000001224 RLG00000013183
rosa_multiflora	Rmu_sc0000982.1_g000066 Rmu_sc0004761.1_g000013 Rmu_sc0017725.1_g000002 Rmu_ssc0000259.1_g000041
rosa_roxburghii	Rroxscaffold_7G00180230
rosa_rugosa	Rorug01G0356200
rosa_samantha	Rh1AG035900 Rh1DG306000 Rh2BG076200 Rh2CG032100 Rh2CG078400 Rh2CG583600 Rh5BG380600 Rh5DG393700 Rh5DG523700 Rh7AG278300 Rh7CG297300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	384
AasI	GACNNNNNNGTC	1 cut(s)	62
AccBSI	CCGCTC	1 cut(s)	256
AccI	GTMKAC	1 cut(s)	84
AciI	CCGC	2 cut(s)	75, 256
AclWI	GGATC	1 cut(s)	22
AfaI	GTAC	3 cut(s)	53, 164, 265
AflIII	ACRYGT	1 cut(s)	363
AgsI	TTSAA	4 cut(s)	46, 136, 158, 340
AluBI	AGCT	2 cut(s)	245, 327
AluI	AGCT	2 cut(s)	245, 327
AlwI	GGATC	1 cut(s)	22
ApeKI	GCWGC	1 cut(s)	202
AspLEI	GCGC	1 cut(s)	16
AspS9I	GGNCC	2 cut(s)	107, 224
AsuC2I	CCSGG	1 cut(s)	11
AvaII	GGWCC	2 cut(s)	107, 224
BauI	CACGAG	1 cut(s)	17
BbvCI	CCTCAGC	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	189
BccI	CCATC	1 cut(s)	229
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	11
BfaI	CTAG	2 cut(s)	261, 333
BisI	GCNGC	1 cut(s)	203
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	204
Bme1390I	CCNGG	1 cut(s)	11
Bme18I	GGWCC	2 cut(s)	107, 224
BmgT120I	GGNCC	2 cut(s)	107, 224
BmiI	GGNNCC	2 cut(s)	103, 291
BmrFI	CCNGG	1 cut(s)	11
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
Bpu10I	CCTNAGC	1 cut(s)	228
Bpu1102I	GCTNAGC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	231
BpuMI	CCSGG	1 cut(s)	11
Bsa29I	ATCGAT	1 cut(s)	92
BsaWI	WCCGGW	1 cut(s)	104
Bse1I	ACTGG	1 cut(s)	281
BseCI	ATCGAT	1 cut(s)	92
BseGI	GGATG	2 cut(s)	6, 190
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	1 cut(s)	281
BseRI	GAGGAG	1 cut(s)	302
BseXI	GCAGC	1 cut(s)	189
BshVI	ATCGAT	1 cut(s)	92
BsiSI	CCGG	2 cut(s)	11, 105
Bsp143I	GATC	3 cut(s)	3, 27, 93
Bsp1720I	GCTNAGC	1 cut(s)	174
BspACI	CCGC	2 cut(s)	75, 256
BspCNI	CTCAG	1 cut(s)	241
BspDI	ATCGAT	1 cut(s)	92
BspLI	GGNNCC	2 cut(s)	103, 291
BspPI	GGATC	1 cut(s)	22
BsrBI	CCGCTC	1 cut(s)	256
BsrI	ACTGG	1 cut(s)	281
BssMI	GATC	3 cut(s)	3, 27, 93
BssSI	CACGAG	1 cut(s)	17
Bst2BI	CACGAG	1 cut(s)	17
Bst4CI	ACNGT	2 cut(s)	268, 301
Bst6I	CTCTTC	2 cut(s)	153, 183
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	2 cut(s)	174, 228
BstF5I	GGATG	2 cut(s)	6, 190
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	3 cut(s)	6, 30, 96
BstMBI	GATC	3 cut(s)	3, 27, 93
BstMWI	GCNNNNNNNGC	1 cut(s)	202
BstNSI	RCATGY	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	27
BstYI	RGATCY	1 cut(s)	27
Bsu15I	ATCGAT	1 cut(s)	92
BsuTUI	ATCGAT	1 cut(s)	92
BtgZI	GCGATG	1 cut(s)	52
BtsCI	GGATG	2 cut(s)	6, 190
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	1 cut(s)	258
CfoI	GCGC	1 cut(s)	16
Cfr13I	GGNCC	2 cut(s)	107, 224
ClaI	ATCGAT	1 cut(s)	92
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	3 cut(s)	52, 163, 264
CviAII	CATG	2 cut(s)	364, 370
CviJI	RGCY	6 cut(s)	232, 245, 260, 280, 292, 327
CviKI_1	RGCY	6 cut(s)	232, 245, 260, 280, 292, 327
CviQI	GTAC	3 cut(s)	52, 163, 264
DdeI	CTNAG	2 cut(s)	174, 228
DpnI	GATC	3 cut(s)	5, 29, 95
DpnII	GATC	3 cut(s)	3, 27, 93
DrdI	GACNNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	62
Eam1104I	CTCTTC	2 cut(s)	153, 183
EarI	CTCTTC	2 cut(s)	153, 183
Eco47I	GGWCC	2 cut(s)	107, 224
EcoO109I	RGGNCCY	1 cut(s)	224
FaeI	CATG	2 cut(s)	367, 373
FaiI	YATR	5 cut(s)	207, 365, 371, 384, 416
FatI	CATG	2 cut(s)	363, 369
FauI	CCCGC	1 cut(s)	249
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	203
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	1 cut(s)	203
FspBI	CTAG	2 cut(s)	261, 333
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	1 cut(s)	203
HapII	CCGG	2 cut(s)	11, 105
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	1 cut(s)	16
Hin1II	CATG	2 cut(s)	367, 373
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	1 cut(s)	145
HpaII	CCGG	2 cut(s)	11, 105
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	361
Hpy188III	TCNNGA	1 cut(s)	25
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	2 cut(s)	59, 86
HpyAV	CCTTC	3 cut(s)	88, 142, 215
HpyCH4III	ACNGT	2 cut(s)	268, 301
HpyCH4V	TGCA	1 cut(s)	205
HpyF10VI	GCNNNNNNNGC	1 cut(s)	202
HpyF3I	CTNAG	2 cut(s)	174, 228
Hsp92II	CATG	2 cut(s)	367, 373
HspAI	GCGC	1 cut(s)	14
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 27, 93
LmnI	GCTCC	2 cut(s)	253, 289
LpnPI	CCDG	4 cut(s)	24, 118, 182, 294
Lsp1109I	GCAGC	1 cut(s)	189
MaeI	CTAG	2 cut(s)	261, 333
MalI	GATC	3 cut(s)	5, 29, 95
MbiI	CCGCTC	1 cut(s)	256
MboI	GATC	3 cut(s)	3, 27, 93
MboII	GAAGA	3 cut(s)	170, 200, 387
MfeI	CAATTG	1 cut(s)	318
MflI	RGATCY	1 cut(s)	27
MluCI	AATT	4 cut(s)	136, 305, 318, 386
MnlI	CCTC	8 cut(s)	41, 120, 160, 175, 184, 237, 280, 303
MslI	CAYNNNNRTG	1 cut(s)	368
MspI	CCGG	2 cut(s)	11, 105
MspR9I	CCNGG	1 cut(s)	11
MunI	CAATTG	1 cut(s)	318
MwoI	GCNNNNNNNGC	1 cut(s)	202
NciI	CCSGG	1 cut(s)	11
NdeII	GATC	3 cut(s)	3, 27, 93
NlaIII	CATG	2 cut(s)	367, 373
NlaIV	GGNNCC	2 cut(s)	103, 291
NspI	RCATGY	1 cut(s)	367
PciI	ACATGT	1 cut(s)	363
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	145
PflFI	GACNNNGTC	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	204
PpuMI	RGGWCCY	1 cut(s)	224
PscI	ACATGT	1 cut(s)	363
PsiI	TTATAA	1 cut(s)	384
Psp5II	RGGWCCY	1 cut(s)	224
PspN4I	GGNNCC	2 cut(s)	103, 291
PspPI	GGNCC	2 cut(s)	107, 224
PspPPI	RGGWCCY	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	27
PsyI	GACNNNGTC	1 cut(s)	62
RsaI	GTAC	3 cut(s)	53, 164, 265
RsaNI	GTAC	3 cut(s)	52, 163, 264
RseI	CAYNNNNRTG	1 cut(s)	368
SalI	GTCGAC	1 cut(s)	83
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	3 cut(s)	3, 27, 93
Sau96I	GGNCC	2 cut(s)	107, 224
ScrFI	CCNGG	1 cut(s)	11
SetI	ASST	5 cut(s)	195, 226, 247, 329, 338
SinI	GGWCC	2 cut(s)	107, 224
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	246
SmoI	CTYRAG	1 cut(s)	246
Sse9I	AATT	4 cut(s)	136, 305, 318, 386
SsiI	CCGC	2 cut(s)	75, 256
SspMI	CTAG	2 cut(s)	261, 333
StyD4I	CCNGG	1 cut(s)	9
TaaI	ACNGT	2 cut(s)	268, 301
TaqI	TCGA	4 cut(s)	24, 84, 92, 219
TasI	AATT	4 cut(s)	136, 305, 318, 386
TatI	WGTACW	1 cut(s)	263
TfiI	GAWTC	1 cut(s)	145
TscAI	CASTG	1 cut(s)	288
TseI	GCWGC	1 cut(s)	202
TspDTI	ATGAA	2 cut(s)	201, 358
TspGWI	ACGGA	1 cut(s)	224
TspRI	CASTG	1 cut(s)	288
Tth111I	GACNNNGTC	1 cut(s)	62
VpaK11BI	GGWCC	2 cut(s)	107, 224
XceI	RCATGY	1 cut(s)	367
XmiI	GTMKAC	1 cut(s)	84
XspI	CTAG	2 cut(s)	261, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.