Rh5DG393700

peroxisome matrix targeting signal-2 binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0009734
Physical Location & Seq
Reverse (-)
61709352 .. 61709594
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG393700.1

Sequence Viewer

Length: 243 bp
ATGATCATCTCGACACACGAGTTGGAGATCCTCTCCTATGATTGGAACAAGTACGATGACTGCTTCTTCGCCACCGCCTCCGTCGACAAATCGATCAAGGTTTGGGATGCCAGGTCCATCGATCGGAACTCCGATTTAGTGCTCAACGACCAAAGCTACGCCATCACAAAAGCCAAATGCTCTCCGCACCGGCAAAGCTTGATGATGTTGTGCTCGTACGACTTGTCGTTGCTTCAATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000268 GO:0001501 GO:0001503 GO:0001764 GO:0001958 GO:0003674 GO:0005048 GO:0005053 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005782 GO:0005829 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006662 GO:0006810 GO:0006886 GO:0006928 GO:0006996 GO:0007031 GO:0007275 GO:0007399 GO:0008104 GO:0008150 GO:0008152 GO:0008610 GO:0008611 GO:0009056 GO:0009058 GO:0009062 GO:0009653 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016477 GO:0016558 GO:0016560 GO:0017038 GO:0018904 GO:0019395 GO:0019752 GO:0019899 GO:0022008 GO:0030154 GO:0030258 GO:0031090 GO:0031461 GO:0031903 GO:0031907 GO:0031974 GO:0032501 GO:0032502 GO:0032787 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034440 GO:0034613 GO:0036075 GO:0040011 GO:0042277 GO:0042579 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046485 GO:0046504 GO:0046907 GO:0046983 GO:0048513 GO:0048699 GO:0048705 GO:0048731 GO:0048856 GO:0048869 GO:0048870 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051674 GO:0055085 GO:0055114 GO:0060348 GO:0060349 GO:0060350 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0080008 GO:0097384 GO:0098588 GO:0098805 GO:1901503 GO:1901575 GO:1901576 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
WD40

Protein Analysis

80

Amino Acids

9.32

Weight (kDa)

5.06

Isoelectric Point (pI)

53.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 7 - 74 1e-05 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 84
AciI CCGC 2 cut(s) 75, 185
AclWI GGATC 1 cut(s) 22
AfaI GTAC 2 cut(s) 53, 218
AfiI CCNNNNNNNGG 2 cut(s) 42, 123
AgsI TTSAA 1 cut(s) 236
AjnI CCWGG 1 cut(s) 110
AluBI AGCT 2 cut(s) 156, 198
AluI AGCT 2 cut(s) 156, 198
Alw21I GWGCWC 2 cut(s) 144, 215
AlwI GGATC 1 cut(s) 22
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AspS9I GGNCC 1 cut(s) 114
AvaII GGWCC 1 cut(s) 114
BauI CACGAG 1 cut(s) 17
Bbv12I GWGCWC 2 cut(s) 144, 215
BccI CCATC 2 cut(s) 125, 170
BciT130I CCWGG 1 cut(s) 112
BclI TGATCA 1 cut(s) 3
BfaI CTAG 1 cut(s) 241
Bme1390I CCNGG 1 cut(s) 112
Bme18I GGWCC 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 114
BmrFI CCNGG 1 cut(s) 112
BmsI GCATC 1 cut(s) 97
BplI GAGNNNNNCTC 2 cut(s) 17, 49
Bsa29I ATCGAT 2 cut(s) 92, 120
Bsc4I CCNNNNNNNGG 2 cut(s) 42, 123
Bse118I RCCGGY 1 cut(s) 189
BseBI CCWGG 1 cut(s) 112
BseCI ATCGAT 2 cut(s) 92, 120
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 2 cut(s) 42, 123
Bsh1285I CGRYCG 1 cut(s) 124
BshVI ATCGAT 2 cut(s) 92, 120
BsiEI CGRYCG 1 cut(s) 124
BsiHKAI GWGCWC 2 cut(s) 144, 215
BsiSI CCGG 1 cut(s) 190
BsiWI CGTACG 1 cut(s) 216
BslI CCNNNNNNNGG 2 cut(s) 42, 123
Bsp1286I GDGCHC 2 cut(s) 144, 215
Bsp143I GATC 4 cut(s) 3, 27, 93, 121
BspACI CCGC 2 cut(s) 75, 185
BspDI ATCGAT 2 cut(s) 92, 120
BspPI GGATC 1 cut(s) 22
BsrFI RCCGGY 1 cut(s) 189
BssAI RCCGGY 1 cut(s) 189
BssMI GATC 4 cut(s) 3, 27, 93, 121
BssSI CACGAG 1 cut(s) 17
Bst2BI CACGAG 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 112
BstF5I GGATG 1 cut(s) 112
BstKTI GATC 4 cut(s) 6, 30, 96, 124
BstMBI GATC 4 cut(s) 3, 27, 93, 121
BstMCI CGRYCG 1 cut(s) 124
BstNI CCWGG 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 110
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
Bsu15I ATCGAT 2 cut(s) 92, 120
BsuTUI ATCGAT 2 cut(s) 92, 120
BtsCI GGATG 1 cut(s) 112
Cfr10I RCCGGY 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 114
ClaI ATCGAT 2 cut(s) 92, 120
Csp6I GTAC 2 cut(s) 52, 217
CviJI RGCY 3 cut(s) 156, 173, 198
CviKI_1 RGCY 3 cut(s) 156, 173, 198
CviQI GTAC 2 cut(s) 52, 217
DpnI GATC 4 cut(s) 5, 29, 95, 123
DpnII GATC 4 cut(s) 3, 27, 93, 121
Eco47I GGWCC 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 110
FaiI YATR 1 cut(s) 39
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 84
FokI GGATG 1 cut(s) 119
FspBI CTAG 1 cut(s) 241
HapII CCGG 1 cut(s) 190
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 196
HpaII CCGG 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 2 cut(s) 126, 133
Hpy188III TCNNGA 1 cut(s) 10
Hpy8I GTNNAC 1 cut(s) 85
Hpy99I CGWCG 1 cut(s) 86
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 27, 93, 121
LpnPI CCDG 3 cut(s) 97, 124, 203
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 241
MalI GATC 4 cut(s) 5, 29, 95, 123
MboI GATC 4 cut(s) 3, 27, 93, 121
MboII GAAGA 1 cut(s) 58
MflI RGATCY 1 cut(s) 27
MhlI GDGCHC 2 cut(s) 144, 215
MnlI CCTC 2 cut(s) 41, 88
MspI CCGG 1 cut(s) 190
MspR9I CCNGG 1 cut(s) 112
MvaI CCWGG 1 cut(s) 112
NdeII GATC 4 cut(s) 3, 27, 93, 121
Pfl23II CGTACG 1 cut(s) 216
Ple19I CGATCG 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 110
PspGI CCWGG 1 cut(s) 110
PspLI CGTACG 1 cut(s) 216
PspPI GGNCC 1 cut(s) 114
PsuI RGATCY 1 cut(s) 27
PvuI CGATCG 1 cut(s) 124
RsaI GTAC 2 cut(s) 53, 218
RsaNI GTAC 2 cut(s) 52, 217
SalI GTCGAC 1 cut(s) 83
Sau3AI GATC 4 cut(s) 3, 27, 93, 121
Sau96I GGNCC 1 cut(s) 114
ScrFI CCNGG 1 cut(s) 112
SduI GDGCHC 2 cut(s) 144, 215
SetI ASST 4 cut(s) 102, 116, 158, 200
SfaNI GCATC 1 cut(s) 97
SinI GGWCC 1 cut(s) 114
SsiI CCGC 2 cut(s) 75, 185
SspMI CTAG 1 cut(s) 241
StyD4I CCNGG 1 cut(s) 110
TaqI TCGA 4 cut(s) 11, 84, 92, 120
TspGWI ACGGA 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 114
XmiI GTMKAC 1 cut(s) 84
XspI CTAG 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.