Rh2CG032100

peroxisome matrix targeting signal-2 binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0009734
Physical Location & Seq
Forward (+)
2417853 .. 2418050
198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG032100.1

Sequence Viewer

Length: 198 bp
ATGATCATCCCGGCGCATGAGTTCGAGATCCTCTCCTGCGATTGGAACAAGTACGACAACTACGTCATCGTCACTGCCTCCGTCGACAAATCGATCAAGGTTTGGGACGCCAGGTCCATCGGAGCTTCGATTTGCTTCTCAACGGCCACAGCTACGCCGTCAGAAAAGCCAAATGCTCGCGGCATTGGCAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000268 GO:0001501 GO:0001503 GO:0001764 GO:0001958 GO:0003674 GO:0005048 GO:0005053 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005782 GO:0005829 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006662 GO:0006810 GO:0006886 GO:0006928 GO:0006996 GO:0007031 GO:0007275 GO:0007399 GO:0008104 GO:0008150 GO:0008152 GO:0008610 GO:0008611 GO:0009056 GO:0009058 GO:0009062 GO:0009653 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016477 GO:0016558 GO:0016560 GO:0017038 GO:0018904 GO:0019395 GO:0019752 GO:0019899 GO:0022008 GO:0030154 GO:0030258 GO:0031090 GO:0031461 GO:0031903 GO:0031907 GO:0031974 GO:0032501 GO:0032502 GO:0032787 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034440 GO:0034613 GO:0036075 GO:0040011 GO:0042277 GO:0042579 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046485 GO:0046504 GO:0046907 GO:0046983 GO:0048513 GO:0048699 GO:0048705 GO:0048731 GO:0048856 GO:0048869 GO:0048870 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051674 GO:0055085 GO:0055114 GO:0060348 GO:0060349 GO:0060350 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0080008 GO:0097384 GO:0098588 GO:0098805 GO:1901503 GO:1901575 GO:1901576 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
WD40

Protein Analysis

65

Amino Acids

7.09

Weight (kDa)

6.53

Isoelectric Point (pI)

31.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40 PF00400 3 - 36 5.1e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 62
AccI GTMKAC 1 cut(s) 84
AccII CGCG 1 cut(s) 180
AciI CCGC 1 cut(s) 180
AclWI GGATC 1 cut(s) 22
AcoI YGGCCR 1 cut(s) 144
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 42
AhdI GACNNNNNGTC 1 cut(s) 112
AjnI CCWGG 1 cut(s) 110
AluBI AGCT 3 cut(s) 125, 152, 194
AluI AGCT 3 cut(s) 125, 152, 194
AlwI GGATC 1 cut(s) 22
AoxI GGCC 1 cut(s) 144
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 1 cut(s) 114
AsuC2I CCSGG 1 cut(s) 11
AvaII GGWCC 1 cut(s) 114
BccI CCATC 1 cut(s) 125
BceAI ACGGC 2 cut(s) 142, 159
BciT130I CCWGG 1 cut(s) 112
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 11
BisI GCNGC 1 cut(s) 181
BlsI GCNGC 1 cut(s) 182
Bme1390I CCNGG 2 cut(s) 11, 112
Bme18I GGWCC 1 cut(s) 114
BmeRI GACNNNNNGTC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 114
BmrFI CCNGG 2 cut(s) 11, 112
BplI GAGNNNNNCTC 2 cut(s) 17, 49
BpuMI CCSGG 1 cut(s) 11
Bsa29I ATCGAT 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 108
Bsc4I CCNNNNNNNGG 1 cut(s) 42
BseBI CCWGG 1 cut(s) 112
BseCI ATCGAT 1 cut(s) 92
BseGI GGATG 1 cut(s) 6
BseLI CCNNNNNNNGG 1 cut(s) 42
Bsh1236I CGCG 1 cut(s) 180
BshFI GGCC 1 cut(s) 146
BshVI ATCGAT 1 cut(s) 92
BsiSI CCGG 1 cut(s) 11
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 1 cut(s) 146
Bsp143I GATC 3 cut(s) 3, 27, 93
BspACI CCGC 1 cut(s) 180
BspANI GGCC 1 cut(s) 146
BspDI ATCGAT 1 cut(s) 92
BspFNI CGCG 1 cut(s) 180
BspPI GGATC 1 cut(s) 22
BssMI GATC 3 cut(s) 3, 27, 93
BssNI GRCGYC 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 112
BstACI GRCGYC 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 178
BstF5I GGATG 1 cut(s) 6
BstFNI CGCG 1 cut(s) 180
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 3 cut(s) 6, 30, 96
BstMBI GATC 3 cut(s) 3, 27, 93
BstMWI GCNNNNNNNGC 1 cut(s) 186
BstNI CCWGG 1 cut(s) 112
BstSCI CCNGG 2 cut(s) 9, 110
BstUI CGCG 1 cut(s) 180
BstX2I RGATCY 1 cut(s) 27
BstYI RGATCY 1 cut(s) 27
Bsu15I ATCGAT 1 cut(s) 92
BsuRI GGCC 1 cut(s) 146
BsuTUI ATCGAT 1 cut(s) 92
BtsCI GGATG 1 cut(s) 6
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 72
Cac8I GCNNGC 1 cut(s) 178
CfoI GCGC 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 114
ClaI ATCGAT 1 cut(s) 92
CseI GACGC 1 cut(s) 116
Csp6I GTAC 1 cut(s) 52
CviAII CATG 1 cut(s) 17
CviJI RGCY 5 cut(s) 125, 146, 152, 169, 194
CviKI_1 RGCY 5 cut(s) 125, 146, 152, 169, 194
CviQI GTAC 1 cut(s) 52
DpnI GATC 3 cut(s) 5, 29, 95
DpnII GATC 3 cut(s) 3, 27, 93
DrdI GACNNNNNNGTC 1 cut(s) 62
DriI GACNNNNNGTC 1 cut(s) 112
DseDI GACNNNNNNGTC 1 cut(s) 62
EaeI YGGCCR 1 cut(s) 144
Eam1105I GACNNNNNGTC 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 110
FaeI CATG 1 cut(s) 20
FaiI YATR 1 cut(s) 18
FaqI GGGAC 1 cut(s) 119
FatI CATG 1 cut(s) 16
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 1 cut(s) 181
Fsp4HI GCNGC 1 cut(s) 181
GlaI GCGC 1 cut(s) 15
GluI GCNGC 1 cut(s) 181
HaeIII GGCC 1 cut(s) 146
HapII CCGG 1 cut(s) 11
HgaI GACGC 1 cut(s) 116
HhaI GCGC 1 cut(s) 16
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 1 cut(s) 20
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HindIII AAGCTT 1 cut(s) 192
HpaII CCGG 1 cut(s) 11
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 2 cut(s) 122, 163
Hpy188III TCNNGA 1 cut(s) 25
Hpy8I GTNNAC 1 cut(s) 85
Hpy99I CGWCG 1 cut(s) 86
HpyCH4IV ACGT 1 cut(s) 63
HpyF10VI GCNNNNNNNGC 1 cut(s) 186
HpySE526I ACGT 1 cut(s) 63
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 1 cut(s) 20
HspAI GCGC 1 cut(s) 14
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 27, 93
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 4 cut(s) 24, 49, 97, 124
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 70
MalI GATC 3 cut(s) 5, 29, 95
MboI GATC 3 cut(s) 3, 27, 93
MflI RGATCY 1 cut(s) 27
MnlI CCTC 2 cut(s) 41, 88
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 2 cut(s) 11, 112
MvaI CCWGG 1 cut(s) 112
MvnI CGCG 1 cut(s) 180
MwoI GCNNNNNNNGC 1 cut(s) 186
NciI CCSGG 1 cut(s) 11
NdeII GATC 3 cut(s) 3, 27, 93
NlaIII CATG 1 cut(s) 20
NmuCI GTSAC 1 cut(s) 70
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PkrI GCNGC 1 cut(s) 182
Psp6I CCWGG 1 cut(s) 110
PspGI CCWGG 1 cut(s) 110
PspPI GGNCC 1 cut(s) 114
PsuI RGATCY 1 cut(s) 27
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
SalI GTCGAC 1 cut(s) 83
SatI GCNGC 1 cut(s) 181
Sau3AI GATC 3 cut(s) 3, 27, 93
Sau96I GGNCC 1 cut(s) 114
ScrFI CCNGG 2 cut(s) 11, 112
SetI ASST 6 cut(s) 66, 102, 116, 127, 154, 196
SinI GGWCC 1 cut(s) 114
SsiI CCGC 1 cut(s) 180
StyD4I CCNGG 2 cut(s) 9, 110
TaiI ACGT 1 cut(s) 66
TaqI TCGA 4 cut(s) 24, 84, 92, 128
TauI GCSGC 1 cut(s) 183
TscAI CASTG 1 cut(s) 79
TseFI GTSAC 1 cut(s) 70
Tsp45I GTSAC 1 cut(s) 70
TspGWI ACGGA 1 cut(s) 70
TspRI CASTG 1 cut(s) 79
VpaK11BI GGWCC 1 cut(s) 114
XmiI GTMKAC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.