peroxisome matrix targeting signal-2 binding
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0318691 RchiOBHm_Chr4g0417811 RchiOBHm_Chr5g0056321 |
| rosa_laevigata | RLG00000001224 RLG00000013183 |
| rosa_multiflora | Rmu_sc0000982.1_g000066 Rmu_sc0004761.1_g000013 Rmu_sc0017725.1_g000002 Rmu_ssc0000259.1_g000041 |
| rosa_roxburghii | Rroxscaffold_7G00180230 |
| rosa_rugosa | Rorug01G0356200 |
| rosa_samantha | Rh1AG035900 Rh1DG306000 Rh2BG076200 Rh2CG032100 Rh2CG078400 Rh2CG583600 Rh5BG380600 Rh5DG393700 Rh5DG523700 Rh7AG278300 Rh7CG297300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 120 |
| AciI | CCGC | 4 cut(s) | 96, 114, 225, 331 |
| AclWI | GGATC | 3 cut(s) | 138, 151, 172 |
| AcsI | RAATTY | 1 cut(s) | 322 |
| AfaI | GTAC | 1 cut(s) | 203 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 192 |
| AflIII | ACRYGT | 1 cut(s) | 118 |
| AgeI | ACCGGT | 1 cut(s) | 335 |
| AjiI | CACGTC | 1 cut(s) | 130 |
| AjnI | CCWGG | 3 cut(s) | 139, 159, 260 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 265, 297 |
| AluBI | AGCT | 2 cut(s) | 302, 344 |
| AluI | AGCT | 2 cut(s) | 302, 344 |
| Alw21I | GWGCWC | 2 cut(s) | 78, 290 |
| AlwI | GGATC | 3 cut(s) | 138, 151, 172 |
| ApeKI | GCWGC | 1 cut(s) | 210 |
| ApoI | RAATTY | 1 cut(s) | 322 |
| AsiGI | ACCGGT | 1 cut(s) | 335 |
| AspLEI | GCGC | 1 cut(s) | 166 |
| AspS9I | GGNCC | 1 cut(s) | 264 |
| AvaII | GGWCC | 1 cut(s) | 264 |
| BamHI | GGATCC | 1 cut(s) | 143 |
| BauI | CACGAG | 1 cut(s) | 167 |
| BbsI | GAAGAC | 1 cut(s) | 46 |
| Bbv12I | GWGCWC | 2 cut(s) | 78, 290 |
| BbvI | GCAGC | 1 cut(s) | 197 |
| BccI | CCATC | 3 cut(s) | 239, 275, 316 |
| BceAI | ACGGC | 1 cut(s) | 223 |
| BciT130I | CCWGG | 3 cut(s) | 141, 161, 262 |
| BclI | TGATCA | 2 cut(s) | 153, 243 |
| BisI | GCNGC | 2 cut(s) | 211, 331 |
| BlsI | GCNGC | 2 cut(s) | 212, 332 |
| Bme1390I | CCNGG | 3 cut(s) | 141, 161, 262 |
| Bme18I | GGWCC | 1 cut(s) | 264 |
| BmgBI | CACGTC | 1 cut(s) | 130 |
| BmgT120I | GGNCC | 1 cut(s) | 264 |
| BmiI | GGNNCC | 1 cut(s) | 145 |
| BmrFI | CCNGG | 3 cut(s) | 141, 161, 262 |
| BmsI | GCATC | 1 cut(s) | 247 |
| BpiI | GAAGAC | 1 cut(s) | 46 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 167, 199 |
| BsaWI | WCCGGW | 1 cut(s) | 335 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 192 |
| Bse118I | RCCGGY | 1 cut(s) | 335 |
| BseBI | CCWGG | 3 cut(s) | 141, 161, 262 |
| BseGI | GGATG | 2 cut(s) | 156, 262 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 192 |
| BseXI | GCAGC | 1 cut(s) | 197 |
| BsgI | GTGCAG | 2 cut(s) | 46, 94 |
| Bsh1236I | CGCG | 1 cut(s) | 120 |
| BshTI | ACCGGT | 1 cut(s) | 335 |
| BsiHKAI | GWGCWC | 2 cut(s) | 78, 290 |
| BsiSI | CCGG | 1 cut(s) | 336 |
| BslFI | GGGAC | 1 cut(s) | 140 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 192 |
| BsmFI | GGGAC | 1 cut(s) | 140 |
| Bsp1286I | GDGCHC | 2 cut(s) | 78, 290 |
| Bsp143I | GATC | 4 cut(s) | 143, 153, 177, 243 |
| BspACI | CCGC | 4 cut(s) | 96, 114, 225, 331 |
| BspFNI | CGCG | 1 cut(s) | 120 |
| BspLI | GGNNCC | 1 cut(s) | 145 |
| BspPI | GGATC | 3 cut(s) | 138, 151, 172 |
| BsrFI | RCCGGY | 1 cut(s) | 335 |
| BssAI | RCCGGY | 1 cut(s) | 335 |
| BssMI | GATC | 4 cut(s) | 143, 153, 177, 243 |
| BssSI | CACGAG | 1 cut(s) | 167 |
| Bst2BI | CACGAG | 1 cut(s) | 167 |
| Bst2UI | CCWGG | 3 cut(s) | 141, 161, 262 |
| Bst4CI | ACNGT | 1 cut(s) | 86 |
| BstC8I | GCNNGC | 1 cut(s) | 118 |
| BstF5I | GGATG | 2 cut(s) | 156, 262 |
| BstFNI | CGCG | 1 cut(s) | 120 |
| BstHHI | GCGC | 1 cut(s) | 166 |
| BstKTI | GATC | 4 cut(s) | 146, 156, 180, 246 |
| BstMBI | GATC | 4 cut(s) | 143, 153, 177, 243 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 95, 117 |
| BstNI | CCWGG | 3 cut(s) | 141, 161, 262 |
| BstSCI | CCNGG | 3 cut(s) | 139, 159, 260 |
| BstUI | CGCG | 1 cut(s) | 120 |
| BstV1I | GCAGC | 1 cut(s) | 197 |
| BstV2I | GAAGAC | 1 cut(s) | 46 |
| BstX2I | RGATCY | 2 cut(s) | 143, 177 |
| BstYI | RGATCY | 2 cut(s) | 143, 177 |
| BtrI | CACGTC | 1 cut(s) | 130 |
| BtsCI | GGATG | 2 cut(s) | 156, 262 |
| Cac8I | GCNNGC | 1 cut(s) | 118 |
| CfoI | GCGC | 1 cut(s) | 166 |
| Cfr10I | RCCGGY | 1 cut(s) | 335 |
| Cfr13I | GGNCC | 1 cut(s) | 264 |
| CseI | GACGC | 1 cut(s) | 109 |
| Csp6I | GTAC | 1 cut(s) | 202 |
| CspAI | ACCGGT | 1 cut(s) | 335 |
| CviAII | CATG | 1 cut(s) | 151 |
| CviJI | RGCY | 5 cut(s) | 139, 210, 302, 319, 344 |
| CviKI_1 | RGCY | 5 cut(s) | 139, 210, 302, 319, 344 |
| CviQI | GTAC | 1 cut(s) | 202 |
| DpnI | GATC | 4 cut(s) | 145, 155, 179, 245 |
| DpnII | GATC | 4 cut(s) | 143, 153, 177, 243 |
| EciI | GGCGGA | 1 cut(s) | 85 |
| Eco47I | GGWCC | 1 cut(s) | 264 |
| EcoRII | CCWGG | 3 cut(s) | 139, 159, 260 |
| FaeI | CATG | 1 cut(s) | 154 |
| FaiI | YATR | 1 cut(s) | 152 |
| FaqI | GGGAC | 1 cut(s) | 140 |
| FatI | CATG | 1 cut(s) | 150 |
| FbaI | TGATCA | 2 cut(s) | 153, 243 |
| Fnu4HI | GCNGC | 2 cut(s) | 211, 331 |
| FokI | GGATG | 2 cut(s) | 143, 269 |
| Fsp4HI | GCNGC | 2 cut(s) | 211, 331 |
| GlaI | GCGC | 1 cut(s) | 165 |
| GluI | GCNGC | 2 cut(s) | 211, 331 |
| HapII | CCGG | 1 cut(s) | 336 |
| HgaI | GACGC | 1 cut(s) | 109 |
| HhaI | GCGC | 1 cut(s) | 166 |
| Hin1II | CATG | 1 cut(s) | 154 |
| Hin6I | GCGC | 1 cut(s) | 164 |
| HinP1I | GCGC | 1 cut(s) | 164 |
| HindIII | AAGCTT | 1 cut(s) | 342 |
| HpaII | CCGG | 1 cut(s) | 336 |
| Hpy188I | TCNGA | 2 cut(s) | 272, 279 |
| Hpy188III | TCNNGA | 1 cut(s) | 175 |
| Hpy99I | CGWCG | 1 cut(s) | 209 |
| HpyCH4III | ACNGT | 1 cut(s) | 86 |
| HpyCH4IV | ACGT | 1 cut(s) | 129 |
| HpyCH4V | TGCA | 3 cut(s) | 63, 111, 189 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 95, 117 |
| HpySE526I | ACGT | 1 cut(s) | 129 |
| Hsp92II | CATG | 1 cut(s) | 154 |
| HspAI | GCGC | 1 cut(s) | 164 |
| Ksp22I | TGATCA | 2 cut(s) | 153, 243 |
| Kzo9I | GATC | 4 cut(s) | 143, 153, 177, 243 |
| LmnI | GCTCC | 1 cut(s) | 73 |
| LpnPI | CCDG | 9 cut(s) | 87, 109, 126, 146, 153, 173, 199, 247, 274 |
| Lsp1109I | GCAGC | 1 cut(s) | 197 |
| LweI | GCATC | 1 cut(s) | 247 |
| MaeII | ACGT | 1 cut(s) | 129 |
| MalI | GATC | 4 cut(s) | 145, 155, 179, 245 |
| MboI | GATC | 4 cut(s) | 143, 153, 177, 243 |
| MboII | GAAGA | 2 cut(s) | 46, 208 |
| MfeI | CAATTG | 1 cut(s) | 190 |
| MflI | RGATCY | 2 cut(s) | 143, 177 |
| MhlI | GDGCHC | 2 cut(s) | 78, 290 |
| MluCI | AATT | 3 cut(s) | 190, 239, 322 |
| MluI | ACGCGT | 1 cut(s) | 118 |
| MnlI | CCTC | 3 cut(s) | 109, 191, 238 |
| MseI | TTAA | 2 cut(s) | 69, 252 |
| MspI | CCGG | 1 cut(s) | 336 |
| MspR9I | CCNGG | 3 cut(s) | 141, 161, 262 |
| MunI | CAATTG | 1 cut(s) | 190 |
| MvaI | CCWGG | 3 cut(s) | 141, 161, 262 |
| MvnI | CGCG | 1 cut(s) | 120 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 95, 117 |
| NdeII | GATC | 4 cut(s) | 143, 153, 177, 243 |
| NlaIII | CATG | 1 cut(s) | 154 |
| NlaIV | GGNNCC | 1 cut(s) | 145 |
| PinAI | ACCGGT | 1 cut(s) | 335 |
| PkrI | GCNGC | 2 cut(s) | 212, 332 |
| Psp6I | CCWGG | 3 cut(s) | 139, 159, 260 |
| PspGI | CCWGG | 3 cut(s) | 139, 159, 260 |
| PspN4I | GGNNCC | 1 cut(s) | 145 |
| PspPI | GGNCC | 1 cut(s) | 264 |
| PsuI | RGATCY | 2 cut(s) | 143, 177 |
| RsaI | GTAC | 1 cut(s) | 203 |
| RsaNI | GTAC | 1 cut(s) | 202 |
| SaqAI | TTAA | 2 cut(s) | 69, 252 |
| SatI | GCNGC | 2 cut(s) | 211, 331 |
| Sau3AI | GATC | 4 cut(s) | 143, 153, 177, 243 |
| Sau96I | GGNCC | 1 cut(s) | 264 |
| ScrFI | CCNGG | 3 cut(s) | 141, 161, 262 |
| SduI | GDGCHC | 2 cut(s) | 78, 290 |
| SetI | ASST | 7 cut(s) | 68, 83, 132, 252, 266, 304, 346 |
| SfaNI | GCATC | 1 cut(s) | 247 |
| SinI | GGWCC | 1 cut(s) | 264 |
| Sse9I | AATT | 3 cut(s) | 190, 239, 322 |
| SsiI | CCGC | 4 cut(s) | 96, 114, 225, 331 |
| StyD4I | CCNGG | 3 cut(s) | 139, 159, 260 |
| TaaI | ACNGT | 1 cut(s) | 86 |
| TaiI | ACGT | 1 cut(s) | 132 |
| TaqI | TCGA | 2 cut(s) | 174, 234 |
| TasI | AATT | 3 cut(s) | 190, 239, 322 |
| TauI | GCSGC | 1 cut(s) | 333 |
| Tru1I | TTAA | 2 cut(s) | 69, 252 |
| Tru9I | TTAA | 2 cut(s) | 69, 252 |
| TseI | GCWGC | 1 cut(s) | 210 |
| VpaK11BI | GGWCC | 1 cut(s) | 264 |
| XapI | RAATTY | 1 cut(s) | 322 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 157 |