Rh1AG035900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0009734
Physical Location & Seq
Reverse (-)
6221472 .. 6223862
2391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG035900.1

Sequence Viewer

Length: 408 bp
ATGTGCATGAGCCTAGGTCCGCCATCATCATCCCGGTGCACGAGTTCGAGATCCTCTCTTGTGATTCGAACAAGTACGACGACTGCGTCATCGCCATCGCCATCGCCTTCGTTGACAAATCGATCAAGGTTTGGGACGTCAAATCCATTGGAGCTCCGATTTCGGTGCTCAACGCCACAGCTACCCCGTCAAAAAAGTCAAATTCTCACCTTACCGGCAAAGCTTGATGATGTCGTGCTCGTACAACTTGTCGGCGTACTTGTCATTGCTTCAATACAAGTACTAGGTACTGGCGACGGTTTTGATAGCTACAGCTCCGGCCTTAGATCCATGACTGATCACTTAGGGTTCCGGTCCTCCCATTCGCTCTTAAAATGCCTTCAATTTTGTGATTTGCTAAGGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

14.56

Weight (kDa)

9.82

Isoelectric Point (pI)

77.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 85
AatII GACGTC 1 cut(s) 140
AciI CCGC 1 cut(s) 20
AclWI GGATC 2 cut(s) 45, 321
AcsI RAATTY 1 cut(s) 201
AcyI GRCGYC 1 cut(s) 137
AfaI GTAC 5 cut(s) 76, 243, 258, 282, 289
AgsI TTSAA 2 cut(s) 273, 383
AluBI AGCT 5 cut(s) 154, 181, 223, 309, 315
AluI AGCT 5 cut(s) 154, 181, 223, 309, 315
Alw21I GWGCWC 4 cut(s) 41, 156, 170, 240
Alw44I GTGCAC 1 cut(s) 37
AlwI GGATC 2 cut(s) 45, 321
AoxI GGCC 1 cut(s) 319
ApaLI GTGCAC 1 cut(s) 37
ApoI RAATTY 1 cut(s) 201
AspA2I CCTAGG 1 cut(s) 13
AspS9I GGNCC 2 cut(s) 17, 354
AsuC2I CCSGG 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 199
AsuII TTCGAA 1 cut(s) 67
AvaII GGWCC 2 cut(s) 17, 354
AvrII CCTAGG 1 cut(s) 13
BaeGI GKGCMC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 156
BauI CACGAG 1 cut(s) 40
Bbv12I GWGCWC 4 cut(s) 41, 156, 170, 240
BccI CCATC 3 cut(s) 31, 103, 109
BcgI CGANNNNNNTGC 2 cut(s) 147, 181
BclI TGATCA 1 cut(s) 337
BcnI CCSGG 1 cut(s) 34
BfaI CTAG 2 cut(s) 14, 284
BfmI CTRYAG 1 cut(s) 310
BlnI CCTAGG 1 cut(s) 13
BmcAI AGTACT 1 cut(s) 282
Bme1390I CCNGG 1 cut(s) 34
Bme18I GGWCC 2 cut(s) 17, 354
BmgT120I GGNCC 2 cut(s) 17, 354
BmiI GGNNCC 1 cut(s) 350
BmrFI CCNGG 1 cut(s) 34
BplI GAGNNNNNCTC 2 cut(s) 40, 72
Bpu10I CCTNAGC 1 cut(s) 398
Bpu14I TTCGAA 1 cut(s) 67
BpuMI CCSGG 1 cut(s) 34
Bsa29I ATCGAT 1 cut(s) 121
BsaHI GRCGYC 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 13
BsaWI WCCGGW 1 cut(s) 351
Bse118I RCCGGY 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 295
Bse3DI GCAATG 1 cut(s) 264
BseCI ATCGAT 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 13
BseGI GGATG 1 cut(s) 29
BseMI GCAATG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 295
BseSI GKGCMC 1 cut(s) 41
BshFI GGCC 1 cut(s) 321
BshVI ATCGAT 1 cut(s) 121
BsiHKAI GWGCWC 4 cut(s) 41, 156, 170, 240
BsiSI CCGG 4 cut(s) 34, 215, 318, 352
BslFI GGGAC 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 148
BsnI GGCC 1 cut(s) 321
Bsp119I TTCGAA 1 cut(s) 67
Bsp1286I GDGCHC 4 cut(s) 41, 156, 170, 240
Bsp143I GATC 4 cut(s) 50, 122, 326, 337
BspACI CCGC 1 cut(s) 20
BspANI GGCC 1 cut(s) 321
BspDI ATCGAT 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 350
BspPI GGATC 2 cut(s) 45, 321
BspT104I TTCGAA 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 264
BsrFI RCCGGY 1 cut(s) 214
BsrI ACTGG 1 cut(s) 295
BssAI RCCGGY 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 4 cut(s) 50, 122, 326, 337
BssNI GRCGYC 1 cut(s) 137
BssSI CACGAG 1 cut(s) 40
BssT1I CCWWGG 1 cut(s) 13
Bst2BI CACGAG 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 299
BstACI GRCGYC 1 cut(s) 137
BstBI TTCGAA 1 cut(s) 67
BstDEI CTNAG 3 cut(s) 323, 343, 398
BstF5I GGATG 1 cut(s) 29
BstKTI GATC 4 cut(s) 53, 125, 329, 340
BstMBI GATC 4 cut(s) 50, 122, 326, 337
BstSCI CCNGG 1 cut(s) 32
BstSFI CTRYAG 1 cut(s) 310
BstSLI GKGCMC 1 cut(s) 41
BstX2I RGATCY 2 cut(s) 50, 326
BstYI RGATCY 2 cut(s) 50, 326
Bsu15I ATCGAT 1 cut(s) 121
BsuRI GGCC 1 cut(s) 321
BsuTUI ATCGAT 1 cut(s) 121
BtgZI GCGATG 3 cut(s) 75, 81, 87
BtsCI GGATG 1 cut(s) 29
Cfr10I RCCGGY 1 cut(s) 214
Cfr13I GGNCC 2 cut(s) 17, 354
ClaI ATCGAT 1 cut(s) 121
CseI GACGC 1 cut(s) 75
Csp6I GTAC 5 cut(s) 75, 242, 257, 281, 288
CviAII CATG 2 cut(s) 7, 331
CviJI RGCY 7 cut(s) 12, 154, 181, 223, 309, 315, 321
CviKI_1 RGCY 7 cut(s) 12, 154, 181, 223, 309, 315, 321
CviQI GTAC 5 cut(s) 75, 242, 257, 281, 288
DdeI CTNAG 3 cut(s) 323, 343, 398
DpnI GATC 4 cut(s) 52, 124, 328, 339
DpnII GATC 4 cut(s) 50, 122, 326, 337
DrdI GACNNNNNNGTC 1 cut(s) 85
DseDI GACNNNNNNGTC 1 cut(s) 85
EciI GGCGGA 1 cut(s) 9
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 13
Eco24I GRGCYC 1 cut(s) 156
Eco47I GGWCC 2 cut(s) 17, 354
Eco53kI GAGCTC 1 cut(s) 154
EcoICRI GAGCTC 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 13
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 13
FaeI CATG 2 cut(s) 10, 334
FaiI YATR 3 cut(s) 8, 332, 406
FaqI GGGAC 1 cut(s) 148
FatI CATG 2 cut(s) 6, 330
FbaI TGATCA 1 cut(s) 337
FokI GGATG 1 cut(s) 16
FriOI GRGCYC 1 cut(s) 156
FspBI CTAG 2 cut(s) 14, 284
HaeIII GGCC 1 cut(s) 321
HapII CCGG 4 cut(s) 34, 215, 318, 352
HgaI GACGC 1 cut(s) 75
Hin1I GRCGYC 1 cut(s) 137
Hin1II CATG 2 cut(s) 10, 334
HincII GTYRAC 1 cut(s) 114
HindII GTYRAC 1 cut(s) 114
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 1 cut(s) 64
HpaII CCGG 4 cut(s) 34, 215, 318, 352
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 2 cut(s) 39, 114
Hpy188I TCNGA 1 cut(s) 158
Hpy188III TCNNGA 1 cut(s) 48
Hpy8I GTNNAC 2 cut(s) 39, 114
Hpy99I CGWCG 2 cut(s) 82, 299
HpyAV CCTTC 2 cut(s) 117, 389
HpyCH4III ACNGT 1 cut(s) 299
HpyCH4IV ACGT 1 cut(s) 137
HpyCH4V TGCA 2 cut(s) 6, 39
HpyF3I CTNAG 3 cut(s) 323, 343, 398
HpySE526I ACGT 1 cut(s) 137
Hsp92I GRCGYC 1 cut(s) 137
Hsp92II CATG 2 cut(s) 10, 334
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 4 cut(s) 50, 122, 326, 337
LmnI GCTCC 3 cut(s) 151, 159, 320
LpnPI CCDG 5 cut(s) 47, 228, 276, 331, 365
MaeI CTAG 2 cut(s) 14, 284
MaeII ACGT 1 cut(s) 137
MalI GATC 4 cut(s) 52, 124, 328, 339
MboI GATC 4 cut(s) 50, 122, 326, 337
MflI RGATCY 2 cut(s) 50, 326
MhlI GDGCHC 4 cut(s) 41, 156, 170, 240
MluCI AATT 2 cut(s) 201, 383
MnlI CCTC 2 cut(s) 64, 367
MseI TTAA 1 cut(s) 371
MslI CAYNNNNRTG 1 cut(s) 34
MspI CCGG 4 cut(s) 34, 215, 318, 352
MspR9I CCNGG 1 cut(s) 34
NciI CCSGG 1 cut(s) 34
NdeII GATC 4 cut(s) 50, 122, 326, 337
NlaIII CATG 2 cut(s) 10, 334
NlaIV GGNNCC 1 cut(s) 350
NspV TTCGAA 1 cut(s) 67
PcsI WCGNNNNNNNCGW 1 cut(s) 83
PfeI GAWTC 1 cut(s) 64
PflFI GACNNNGTC 1 cut(s) 85
Psp124BI GAGCTC 1 cut(s) 156
PspN4I GGNNCC 1 cut(s) 350
PspPI GGNCC 2 cut(s) 17, 354
PsuI RGATCY 2 cut(s) 50, 326
PsyI GACNNNGTC 1 cut(s) 85
RsaI GTAC 5 cut(s) 76, 243, 258, 282, 289
RsaNI GTAC 5 cut(s) 75, 242, 257, 281, 288
RseI CAYNNNNRTG 1 cut(s) 34
SacI GAGCTC 1 cut(s) 156
SaqAI TTAA 1 cut(s) 371
Sau3AI GATC 4 cut(s) 50, 122, 326, 337
Sau96I GGNCC 2 cut(s) 17, 354
ScaI AGTACT 1 cut(s) 282
ScrFI CCNGG 1 cut(s) 34
SduI GDGCHC 4 cut(s) 41, 156, 170, 240
SfcI CTRYAG 1 cut(s) 310
SfuI TTCGAA 1 cut(s) 67
SinI GGWCC 2 cut(s) 17, 354
SmiMI CAYNNNNRTG 1 cut(s) 34
Sse9I AATT 2 cut(s) 201, 383
SsiI CCGC 1 cut(s) 20
SspMI CTAG 2 cut(s) 14, 284
SstI GAGCTC 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 32
StyI CCWWGG 1 cut(s) 13
TaaI ACNGT 1 cut(s) 299
TaiI ACGT 1 cut(s) 140
TaqI TCGA 3 cut(s) 47, 67, 121
TasI AATT 2 cut(s) 201, 383
TatI WGTACW 1 cut(s) 280
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 1 cut(s) 371
Tru9I TTAA 1 cut(s) 371
Tth111I GACNNNGTC 1 cut(s) 85
VneI GTGCAC 1 cut(s) 37
VpaK11BI GGWCC 2 cut(s) 17, 354
XapI RAATTY 1 cut(s) 201
XmaJI CCTAGG 1 cut(s) 13
XspI CTAG 2 cut(s) 14, 284
ZraI GACGTC 1 cut(s) 138
ZrmI AGTACT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.