Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0009734

Physical Location & Seq

Genomic Coordinates Reverse (-)

76126584 .. 76128863

Gene Structure 2280 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG583600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTGCATGAGCCTAGGTCTGCCATCATCATCTCGGTGCACGAGTTCGAGATCCTCTCTTGTGATTCAAACAAGTACGACGACTGCGTCATCGCCATCGCCTTCGTTGACAAATCGATCAAGGTTTGGGACGTCAAATCCATTGGAGCTCCAATTTCGGTGCTCAACGCCACAGCTACCCCGTCAAAAAAGTCAAATTCTCACCTTACCGGCAAAGCTTGATGATGTCGTGCTCGTACAACTTGTCGGCGTACTTGTCATTGCTTCAATACAAGTACTAGGTACTGGCGACGGTTTTGATAGCTACAGCTCCGGCCTTAGATCCATGACTGATCACTTAGGCAAGAGGATGAAGAGGTGCTGGTGCTGCATATGGATTTGGTCGAAGTCCTCAGCCGATGGAAGGTTTGTATTTTCAACACTAACACTATTGTTTACTATATTGATTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

16.36

Weight (kDa)

9.69

Isoelectric Point (pI)

64.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009734)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318691 RchiOBHm_Chr4g0417811 RchiOBHm_Chr5g0056321
rosa_laevigata	RLG00000001224 RLG00000013183
rosa_multiflora	Rmu_sc0000982.1_g000066 Rmu_sc0004761.1_g000013 Rmu_sc0017725.1_g000002 Rmu_ssc0000259.1_g000041
rosa_roxburghii	Rroxscaffold_7G00180230
rosa_rugosa	Rorug01G0356200
rosa_samantha	Rh1AG035900 Rh1DG306000 Rh2BG076200 Rh2CG032100 Rh2CG078400 Rh2CG583600 Rh5BG380600 Rh5DG393700 Rh5DG523700 Rh7AG278300 Rh7CG297300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	85
AatII	GACGTC	1 cut(s)	134
AclWI	GGATC	2 cut(s)	45, 315
AcsI	RAATTY	1 cut(s)	195
AcyI	GRCGYC	1 cut(s)	131
AfaI	GTAC	5 cut(s)	76, 237, 252, 276, 283
AfiI	CCNNNNNNNGG	1 cut(s)	402
AgsI	TTSAA	3 cut(s)	68, 267, 417
AluBI	AGCT	5 cut(s)	148, 175, 217, 303, 309
AluI	AGCT	5 cut(s)	148, 175, 217, 303, 309
Alw21I	GWGCWC	4 cut(s)	41, 150, 164, 234
Alw44I	GTGCAC	1 cut(s)	37
AlwI	GGATC	2 cut(s)	45, 315
AoxI	GGCC	1 cut(s)	313
ApaLI	GTGCAC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	366
ApoI	RAATTY	1 cut(s)	195
AspA2I	CCTAGG	1 cut(s)	13
AsuHPI	GGTGA	1 cut(s)	193
AvrII	CCTAGG	1 cut(s)	13
BaeGI	GKGCMC	1 cut(s)	41
BanII	GRGCYC	1 cut(s)	150
BauI	CACGAG	1 cut(s)	40
Bbv12I	GWGCWC	4 cut(s)	41, 150, 164, 234
BbvCI	CCTCAGC	1 cut(s)	391
BbvI	GCAGC	1 cut(s)	353
BccI	CCATC	3 cut(s)	31, 103, 392
BclI	TGATCA	1 cut(s)	331
BfaI	CTAG	2 cut(s)	14, 278
BfmI	CTRYAG	1 cut(s)	304
BisI	GCNGC	1 cut(s)	367
BlnI	CCTAGG	1 cut(s)	13
BlsI	GCNGC	1 cut(s)	368
BmcAI	AGTACT	1 cut(s)	276
BplI	GAGNNNNNCTC	2 cut(s)	40, 72
Bpu10I	CCTNAGC	1 cut(s)	391
Bsa29I	ATCGAT	1 cut(s)	115
BsaHI	GRCGYC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	1 cut(s)	402
Bse118I	RCCGGY	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	289
Bse3DI	GCAATG	1 cut(s)	258
BseCI	ATCGAT	1 cut(s)	115
BseDI	CCNNGG	1 cut(s)	13
BseGI	GGATG	1 cut(s)	354
BseLI	CCNNNNNNNGG	1 cut(s)	402
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	405
BseNI	ACTGG	1 cut(s)	289
BseSI	GKGCMC	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	353
BshFI	GGCC	1 cut(s)	315
BshVI	ATCGAT	1 cut(s)	115
BsiHKAI	GWGCWC	4 cut(s)	41, 150, 164, 234
BsiSI	CCGG	2 cut(s)	209, 312
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	1 cut(s)	402
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	1 cut(s)	315
Bsp1286I	GDGCHC	4 cut(s)	41, 150, 164, 234
Bsp143I	GATC	4 cut(s)	50, 116, 320, 331
BspANI	GGCC	1 cut(s)	315
BspCNI	CTCAG	1 cut(s)	404
BspDI	ATCGAT	1 cut(s)	115
BspPI	GGATC	2 cut(s)	45, 315
BsrDI	GCAATG	1 cut(s)	258
BsrFI	RCCGGY	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	289
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	13
BssMI	GATC	4 cut(s)	50, 116, 320, 331
BssNI	GRCGYC	1 cut(s)	131
BssSI	CACGAG	1 cut(s)	40
BssT1I	CCWWGG	1 cut(s)	13
Bst2BI	CACGAG	1 cut(s)	40
Bst4CI	ACNGT	1 cut(s)	293
Bst6I	CTCTTC	1 cut(s)	347
BstACI	GRCGYC	1 cut(s)	131
BstDEI	CTNAG	3 cut(s)	317, 337, 391
BstF5I	GGATG	1 cut(s)	354
BstKTI	GATC	4 cut(s)	53, 119, 323, 334
BstMBI	GATC	4 cut(s)	50, 116, 320, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	366
BstSFI	CTRYAG	1 cut(s)	304
BstSLI	GKGCMC	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	353
BstX2I	RGATCY	2 cut(s)	50, 320
BstYI	RGATCY	2 cut(s)	50, 320
Bsu15I	ATCGAT	1 cut(s)	115
BsuRI	GGCC	1 cut(s)	315
BsuTUI	ATCGAT	1 cut(s)	115
BtgZI	GCGATG	2 cut(s)	75, 81
BtsCI	GGATG	1 cut(s)	354
Cfr10I	RCCGGY	1 cut(s)	208
ClaI	ATCGAT	1 cut(s)	115
CseI	GACGC	1 cut(s)	75
Csp6I	GTAC	5 cut(s)	75, 236, 251, 275, 282
CviAII	CATG	2 cut(s)	7, 325
CviJI	RGCY	8 cut(s)	12, 148, 175, 217, 303, 309, 315, 395
CviKI_1	RGCY	8 cut(s)	12, 148, 175, 217, 303, 309, 315, 395
CviQI	GTAC	5 cut(s)	75, 236, 251, 275, 282
DdeI	CTNAG	3 cut(s)	317, 337, 391
DpnI	GATC	4 cut(s)	52, 118, 322, 333
DpnII	GATC	4 cut(s)	50, 116, 320, 331
DrdI	GACNNNNNNGTC	1 cut(s)	85
DseDI	GACNNNNNNGTC	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	347
EarI	CTCTTC	1 cut(s)	347
Ecl136II	GAGCTC	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	13
Eco24I	GRGCYC	1 cut(s)	150
Eco53kI	GAGCTC	1 cut(s)	148
EcoICRI	GAGCTC	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	13
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	13
FaeI	CATG	2 cut(s)	10, 328
FaiI	YATR	5 cut(s)	8, 326, 371, 373, 440
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	2 cut(s)	6, 324
FauNDI	CATATG	1 cut(s)	371
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	1 cut(s)	367
FokI	GGATG	1 cut(s)	361
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	1 cut(s)	367
FspBI	CTAG	2 cut(s)	14, 278
GluI	GCNGC	1 cut(s)	367
HaeIII	GGCC	1 cut(s)	315
HapII	CCGG	2 cut(s)	209, 312
HgaI	GACGC	1 cut(s)	75
Hin1I	GRCGYC	1 cut(s)	131
Hin1II	CATG	2 cut(s)	10, 328
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	1 cut(s)	64
HpaII	CCGG	2 cut(s)	209, 312
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	3 cut(s)	39, 108, 435
Hpy188III	TCNNGA	1 cut(s)	48
Hpy8I	GTNNAC	3 cut(s)	39, 108, 435
Hpy99I	CGWCG	2 cut(s)	82, 293
HpyAV	CCTTC	2 cut(s)	111, 396
HpyCH4III	ACNGT	1 cut(s)	293
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	3 cut(s)	6, 39, 369
HpyF10VI	GCNNNNNNNGC	1 cut(s)	366
HpyF3I	CTNAG	3 cut(s)	317, 337, 391
HpySE526I	ACGT	1 cut(s)	131
Hsp92I	GRCGYC	1 cut(s)	131
Hsp92II	CATG	2 cut(s)	10, 328
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	4 cut(s)	50, 116, 320, 331
LmnI	GCTCC	3 cut(s)	145, 153, 314
LpnPI	CCDG	4 cut(s)	222, 270, 325, 346
Lsp1109I	GCAGC	1 cut(s)	353
MaeI	CTAG	2 cut(s)	14, 278
MaeII	ACGT	1 cut(s)	131
MalI	GATC	4 cut(s)	52, 118, 322, 333
MboI	GATC	4 cut(s)	50, 116, 320, 331
MboII	GAAGA	1 cut(s)	364
MflI	RGATCY	2 cut(s)	50, 320
MhlI	GDGCHC	4 cut(s)	41, 150, 164, 234
MluCI	AATT	2 cut(s)	152, 195
MnlI	CCTC	4 cut(s)	64, 339, 348, 400
MseI	TTAA	1 cut(s)	451
MslI	CAYNNNNRTG	1 cut(s)	34
MspI	CCGG	2 cut(s)	209, 312
MwoI	GCNNNNNNNGC	1 cut(s)	366
NdeI	CATATG	1 cut(s)	371
NdeII	GATC	4 cut(s)	50, 116, 320, 331
NlaIII	CATG	2 cut(s)	10, 328
PcsI	WCGNNNNNNNCGW	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	64
PflFI	GACNNNGTC	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	368
Psp124BI	GAGCTC	1 cut(s)	150
PsuI	RGATCY	2 cut(s)	50, 320
PsyI	GACNNNGTC	1 cut(s)	85
RsaI	GTAC	5 cut(s)	76, 237, 252, 276, 283
RsaNI	GTAC	5 cut(s)	75, 236, 251, 275, 282
RseI	CAYNNNNRTG	1 cut(s)	34
SacI	GAGCTC	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	451
SatI	GCNGC	1 cut(s)	367
Sau3AI	GATC	4 cut(s)	50, 116, 320, 331
ScaI	AGTACT	1 cut(s)	276
SduI	GDGCHC	4 cut(s)	41, 150, 164, 234
SfcI	CTRYAG	1 cut(s)	304
SmiMI	CAYNNNNRTG	1 cut(s)	34
Sse9I	AATT	2 cut(s)	152, 195
SspMI	CTAG	2 cut(s)	14, 278
SstI	GAGCTC	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	13
TaaI	ACNGT	1 cut(s)	293
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	3 cut(s)	47, 115, 383
TasI	AATT	2 cut(s)	152, 195
TatI	WGTACW	1 cut(s)	274
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	1 cut(s)	451
Tru9I	TTAA	1 cut(s)	451
TseI	GCWGC	1 cut(s)	366
TspDTI	ATGAA	1 cut(s)	365
Tth111I	GACNNNGTC	1 cut(s)	85
VneI	GTGCAC	1 cut(s)	37
XapI	RAATTY	1 cut(s)	195
XmaJI	CCTAGG	1 cut(s)	13
XspI	CTAG	2 cut(s)	14, 278
ZraI	GACGTC	1 cut(s)	132
ZrmI	AGTACT	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.