Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000259.1

Orthogroup ID

OG0009734

Physical Location & Seq

Genomic Coordinates Reverse (-)

189341 .. 189748

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000259.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ctgccactaaagttaagcgtaattaccaaagatgccactggcagctctctctccctcccgttatccaatcccgtctcagctttctctctctacctcgcctccgtccgcacctttaaggagcacacctactgcgtctactccgccctcttcgcctccgtctccagcgactgcactgcacgcgtcggggacgtgcatgagcctagatccaccatgatcatcccggcgcatgagttcgagatcctctcctgcgattggaacaagtacaacaactgcgtcatcgtcattgcctccgtcgacaaatcgatcaaggtttgggacgccaggtccatcggagcttcgatttgcttctcaacggccacagctacgccgtcagaaaagccaaattctcgccgcattggcaaagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000268 GO:0001501 GO:0001503 GO:0001764 GO:0001958 GO:0003674 GO:0005048 GO:0005053 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005782 GO:0005829 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006662 GO:0006810 GO:0006886 GO:0006928 GO:0006996 GO:0007031 GO:0007275 GO:0007399 GO:0008104 GO:0008150 GO:0008152 GO:0008610 GO:0008611 GO:0009056 GO:0009058 GO:0009062 GO:0009653 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016477 GO:0016558 GO:0016560 GO:0017038 GO:0018904 GO:0019395 GO:0019752 GO:0019899 GO:0022008 GO:0030154 GO:0030258 GO:0031090 GO:0031461 GO:0031903 GO:0031907 GO:0031974 GO:0032501 GO:0032502 GO:0032787 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034440 GO:0034613 GO:0036075 GO:0040011 GO:0042277 GO:0042579 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046485 GO:0046504 GO:0046907 GO:0046983 GO:0048513 GO:0048699 GO:0048705 GO:0048731 GO:0048856 GO:0048869 GO:0048870 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051674 GO:0055085 GO:0055114 GO:0060348 GO:0060349 GO:0060350 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0080008 GO:0097384 GO:0098588 GO:0098805 GO:1901503 GO:1901575 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

WD40

Protein Analysis

135

Amino Acids

14.63

Weight (kDa)

8.65

Isoelectric Point (pI)

33.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009734)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318691 RchiOBHm_Chr4g0417811 RchiOBHm_Chr5g0056321
rosa_laevigata	RLG00000001224 RLG00000013183
rosa_multiflora	Rmu_sc0000982.1_g000066 Rmu_sc0004761.1_g000013 Rmu_sc0017725.1_g000002 Rmu_ssc0000259.1_g000041
rosa_roxburghii	Rroxscaffold_7G00180230
rosa_rugosa	Rorug01G0356200
rosa_samantha	Rh1AG035900 Rh1DG306000 Rh2BG076200 Rh2CG032100 Rh2CG078400 Rh2CG583600 Rh5BG380600 Rh5DG393700 Rh5DG523700 Rh7AG278300 Rh7CG297300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	135, 294
AccII	CGCG	1 cut(s)	180
AciI	CCGC	3 cut(s)	106, 141, 391
AclWI	GGATC	2 cut(s)	198, 232
AcoI	YGGCCR	1 cut(s)	354
AcsI	RAATTY	1 cut(s)	382
AcyI	GRCGYC	1 cut(s)	318
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	252
AflIII	ACRYGT	1 cut(s)	178
AhdI	GACNNNNNGTC	1 cut(s)	322
AjiI	CACGTC	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	320
AluBI	AGCT	5 cut(s)	45, 80, 335, 362, 404
AluI	AGCT	5 cut(s)	45, 80, 335, 362, 404
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	2 cut(s)	79, 163
AlwI	GGATC	2 cut(s)	198, 232
AlwNI	CAGNNNCTG	1 cut(s)	168
AoxI	GGCC	1 cut(s)	354
ApeKI	GCWGC	1 cut(s)	42
ApoI	RAATTY	1 cut(s)	382
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	1 cut(s)	324
AsuC2I	CCSGG	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	1 cut(s)	335
BceAI	ACGGC	2 cut(s)	352, 369
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BciT130I	CCWGG	1 cut(s)	322
BclI	TGATCA	1 cut(s)	213
BcnI	CCSGG	1 cut(s)	221
BcoDI	GTCTC	2 cut(s)	79, 163
BfaI	CTAG	1 cut(s)	201
BglI	GCCNNNNNGGC	1 cut(s)	396
BisI	GCNGC	2 cut(s)	43, 391
BlsI	GCNGC	2 cut(s)	44, 392
Bme1390I	CCNGG	2 cut(s)	221, 322
Bme18I	GGWCC	1 cut(s)	324
BmeRI	GACNNNNNGTC	1 cut(s)	322
BmgBI	CACGTC	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	324
BmrFI	CCNGG	2 cut(s)	221, 322
BmsI	GCATC	1 cut(s)	22
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
BpmI	CTGGAG	1 cut(s)	145
BpuMI	CCSGG	1 cut(s)	221
Bsa29I	ATCGAT	1 cut(s)	302
BsaHI	GRCGYC	1 cut(s)	318
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	1 cut(s)	252
Bse1I	ACTGG	1 cut(s)	43
Bse3DI	GCAATG	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	322
BseCI	ATCGAT	1 cut(s)	302
BseGI	GGATG	1 cut(s)	216
BseLI	CCNNNNNNNGG	1 cut(s)	252
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	43
BseXI	GCAGC	1 cut(s)	54
BsgI	GTGCAG	2 cut(s)	154, 159
Bsh1236I	CGCG	1 cut(s)	180
BshFI	GGCC	1 cut(s)	356
BshVI	ATCGAT	1 cut(s)	302
BsiHKAI	GWGCWC	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	221
BslFI	GGGAC	2 cut(s)	200, 329
BslI	CCNNNNNNNGG	1 cut(s)	252
BsmAI	GTCTC	2 cut(s)	79, 163
BsmBI	CGTCTC	2 cut(s)	79, 163
BsmFI	GGGAC	2 cut(s)	200, 329
BsnI	GGCC	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	123
Bsp143I	GATC	4 cut(s)	203, 213, 237, 303
BspACI	CCGC	3 cut(s)	106, 141, 391
BspANI	GGCC	1 cut(s)	356
BspCNI	CTCAG	1 cut(s)	89
BspDI	ATCGAT	1 cut(s)	302
BspFNI	CGCG	1 cut(s)	180
BspPI	GGATC	2 cut(s)	198, 232
BsrDI	GCAATG	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	43
BssMI	GATC	4 cut(s)	203, 213, 237, 303
BssNI	GRCGYC	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	322
Bst6I	CTCTTC	1 cut(s)	152
BstACI	GRCGYC	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	216
BstFNI	CGCG	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	4 cut(s)	206, 216, 240, 306
BstMAI	GTCTC	2 cut(s)	79, 163
BstMBI	GATC	4 cut(s)	203, 213, 237, 303
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 177, 396
BstNI	CCWGG	1 cut(s)	322
BstSCI	CCNGG	2 cut(s)	219, 320
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	1 cut(s)	54
BstX2I	RGATCY	2 cut(s)	203, 237
BstYI	RGATCY	2 cut(s)	203, 237
Bsu15I	ATCGAT	1 cut(s)	302
BsuRI	GGCC	1 cut(s)	356
BsuTUI	ATCGAT	1 cut(s)	302
BtrI	CACGTC	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	216
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	2 cut(s)	36, 171
Cac8I	GCNNGC	1 cut(s)	178
CaiI	CAGNNNCTG	1 cut(s)	168
CfoI	GCGC	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	324
ClaI	ATCGAT	1 cut(s)	302
CseI	GACGC	4 cut(s)	121, 169, 262, 326
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	3 cut(s)	194, 211, 227
CviJI	RGCY	8 cut(s)	45, 80, 199, 335, 356, 362, 379, 404
CviKI_1	RGCY	8 cut(s)	45, 80, 199, 335, 356, 362, 379, 404
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	1 cut(s)	76
DpnI	GATC	4 cut(s)	205, 215, 239, 305
DpnII	GATC	4 cut(s)	203, 213, 237, 303
DriI	GACNNNNNGTC	1 cut(s)	322
EaeI	YGGCCR	1 cut(s)	354
Eam1104I	CTCTTC	1 cut(s)	152
Eam1105I	GACNNNNNGTC	1 cut(s)	322
EarI	CTCTTC	1 cut(s)	152
EciI	GGCGGA	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	324
EcoRII	CCWGG	1 cut(s)	320
Esp3I	CGTCTC	2 cut(s)	79, 163
FaeI	CATG	3 cut(s)	197, 214, 230
FaiI	YATR	3 cut(s)	195, 212, 228
FaqI	GGGAC	2 cut(s)	200, 329
FatI	CATG	3 cut(s)	193, 210, 226
FbaI	TGATCA	1 cut(s)	213
FblI	GTMKAC	2 cut(s)	135, 294
Fnu4HI	GCNGC	2 cut(s)	43, 391
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	2 cut(s)	43, 391
FspBI	CTAG	1 cut(s)	201
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	2 cut(s)	43, 391
GsuI	CTGGAG	1 cut(s)	145
HaeIII	GGCC	1 cut(s)	356
HapII	CCGG	1 cut(s)	221
HgaI	GACGC	4 cut(s)	121, 169, 262, 326
HhaI	GCGC	1 cut(s)	226
Hin1I	GRCGYC	1 cut(s)	318
Hin1II	CATG	3 cut(s)	197, 214, 230
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HindIII	AAGCTT	1 cut(s)	402
HpaII	CCGG	1 cut(s)	221
Hpy166II	GTNNAC	2 cut(s)	136, 295
Hpy188I	TCNGA	2 cut(s)	332, 373
Hpy188III	TCNNGA	1 cut(s)	235
Hpy8I	GTNNAC	2 cut(s)	136, 295
Hpy99I	CGWCG	2 cut(s)	185, 296
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	3 cut(s)	171, 176, 193
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 177, 396
HpyF3I	CTNAG	1 cut(s)	76
HpySE526I	ACGT	1 cut(s)	189
Hsp92I	GRCGYC	1 cut(s)	318
Hsp92II	CATG	3 cut(s)	197, 214, 230
HspAI	GCGC	1 cut(s)	224
Ksp22I	TGATCA	1 cut(s)	213
Kzo9I	GATC	4 cut(s)	203, 213, 237, 303
LmnI	GCTCC	2 cut(s)	118, 332
LpnPI	CCDG	6 cut(s)	24, 175, 234, 259, 307, 334
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	1 cut(s)	189
MalI	GATC	4 cut(s)	205, 215, 239, 305
MboI	GATC	4 cut(s)	203, 213, 237, 303
MboII	GAAGA	1 cut(s)	139
MflI	RGATCY	2 cut(s)	203, 237
MhlI	GDGCHC	1 cut(s)	123
MluCI	AATT	2 cut(s)	21, 382
MluI	ACGCGT	1 cut(s)	178
MnlI	CCTC	7 cut(s)	65, 104, 109, 155, 163, 251, 298
MseI	TTAA	2 cut(s)	14, 114
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	2 cut(s)	221, 322
MvaI	CCWGG	1 cut(s)	322
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	3 cut(s)	149, 177, 396
NciI	CCSGG	1 cut(s)	221
NdeII	GATC	4 cut(s)	203, 213, 237, 303
NlaIII	CATG	3 cut(s)	197, 214, 230
PkrI	GCNGC	2 cut(s)	44, 392
Psp6I	CCWGG	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	320
PspPI	GGNCC	1 cut(s)	324
PstNI	CAGNNNCTG	1 cut(s)	168
PsuI	RGATCY	2 cut(s)	203, 237
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SalI	GTCGAC	1 cut(s)	293
SaqAI	TTAA	2 cut(s)	14, 114
SatI	GCNGC	2 cut(s)	43, 391
Sau3AI	GATC	4 cut(s)	203, 213, 237, 303
Sau96I	GGNCC	1 cut(s)	324
ScrFI	CCNGG	2 cut(s)	221, 322
SduI	GDGCHC	1 cut(s)	123
SfaNI	GCATC	1 cut(s)	22
SinI	GGWCC	1 cut(s)	324
Sse9I	AATT	2 cut(s)	21, 382
SsiI	CCGC	3 cut(s)	106, 141, 391
SspMI	CTAG	1 cut(s)	201
StyD4I	CCNGG	2 cut(s)	219, 320
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	4 cut(s)	234, 294, 302, 338
TasI	AATT	2 cut(s)	21, 382
TatI	WGTACW	1 cut(s)	261
TauI	GCSGC	1 cut(s)	393
Tru1I	TTAA	2 cut(s)	14, 114
Tru9I	TTAA	2 cut(s)	14, 114
TscAI	CASTG	2 cut(s)	43, 178
TseI	GCWGC	1 cut(s)	42
TspGWI	ACGGA	3 cut(s)	91, 145, 280
TspRI	CASTG	2 cut(s)	43, 178
VpaK11BI	GGWCC	1 cut(s)	324
XapI	RAATTY	1 cut(s)	382
XmiI	GTMKAC	2 cut(s)	135, 294
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.