Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0009734

Physical Location & Seq

Genomic Coordinates Reverse (-)

60342107 .. 60342355

Gene Structure 249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG380600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGATCATCTCGACGCACGAGTTGGAGATCCTCTCCTATGATTGGAACAAGTACGATGACTGCTTCTTCACCACCGCCTCCGTCCAGGTCCATCGATCGGAACTCCGATTTACTGCTCAACGGCCAAAGCTACGCCATCACAAAAGCCAAATACTCGCCGCACCAGCAAAGCTTGATGATGTCATGCTCGTACGACTTGTCGTTGCTTCAATACTAGTAAGGGCTAGGAACCGGCGACGGTTCCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0006605 GO:0006625 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0031461 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043574 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080008 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

WD40

Protein Analysis

82

Amino Acids

9.74

Weight (kDa)

10.54

Isoelectric Point (pI)

68.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009734)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318691 RchiOBHm_Chr4g0417811 RchiOBHm_Chr5g0056321
rosa_laevigata	RLG00000001224 RLG00000013183
rosa_multiflora	Rmu_sc0000982.1_g000066 Rmu_sc0004761.1_g000013 Rmu_sc0017725.1_g000002 Rmu_ssc0000259.1_g000041
rosa_roxburghii	Rroxscaffold_7G00180230
rosa_rugosa	Rorug01G0356200
rosa_samantha	Rh1AG035900 Rh1DG306000 Rh2BG076200 Rh2CG032100 Rh2CG078400 Rh2CG583600 Rh5BG380600 Rh5DG393700 Rh5DG523700 Rh7AG278300 Rh7CG297300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	75, 159
AclWI	GGATC	1 cut(s)	22
AcoI	YGGCCR	1 cut(s)	122
AfaI	GTAC	2 cut(s)	53, 192
AfiI	CCNNNNNNNGG	2 cut(s)	42, 97
AgsI	TTSAA	1 cut(s)	210
AhlI	ACTAGT	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	84
AluBI	AGCT	2 cut(s)	130, 172
AluI	AGCT	2 cut(s)	130, 172
AlwI	GGATC	1 cut(s)	22
AoxI	GGCC	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	88
BauI	CACGAG	1 cut(s)	17
BccI	CCATC	2 cut(s)	99, 144
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	86
BclI	TGATCA	1 cut(s)	3
BcuI	ACTAGT	1 cut(s)	214
BfaI	CTAG	2 cut(s)	215, 225
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
Bme1390I	CCNGG	1 cut(s)	86
Bme18I	GGWCC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	88
BmiI	GGNNCC	2 cut(s)	230, 242
BmrFI	CCNGG	1 cut(s)	86
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
Bsa29I	ATCGAT	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 97
Bse118I	RCCGGY	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	86
BseCI	ATCGAT	1 cut(s)	94
BseLI	CCNNNNNNNGG	2 cut(s)	42, 97
Bsh1285I	CGRYCG	1 cut(s)	98
BshFI	GGCC	1 cut(s)	124
BshVI	ATCGAT	1 cut(s)	94
BsiEI	CGRYCG	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	232
BsiWI	CGTACG	1 cut(s)	190
BslI	CCNNNNNNNGG	2 cut(s)	42, 97
BsnI	GGCC	1 cut(s)	124
Bsp143I	GATC	3 cut(s)	3, 27, 95
BspACI	CCGC	2 cut(s)	75, 159
BspANI	GGCC	1 cut(s)	124
BspDI	ATCGAT	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	230, 242
BspPI	GGATC	1 cut(s)	22
BsrFI	RCCGGY	1 cut(s)	231
BssAI	RCCGGY	1 cut(s)	231
BssMI	GATC	3 cut(s)	3, 27, 95
BssSI	CACGAG	1 cut(s)	17
Bst2BI	CACGAG	1 cut(s)	17
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	240
BstKTI	GATC	3 cut(s)	6, 30, 98
BstMBI	GATC	3 cut(s)	3, 27, 95
BstMCI	CGRYCG	1 cut(s)	98
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNI	CCWGG	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	27
BstYI	RGATCY	1 cut(s)	27
Bsu15I	ATCGAT	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	124
BsuTUI	ATCGAT	1 cut(s)	94
Cfr10I	RCCGGY	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	88
ClaI	ATCGAT	1 cut(s)	94
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	52, 191
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	5 cut(s)	124, 130, 147, 172, 224
CviKI_1	RGCY	5 cut(s)	124, 130, 147, 172, 224
CviQI	GTAC	2 cut(s)	52, 191
DpnI	GATC	3 cut(s)	5, 29, 97
DpnII	GATC	3 cut(s)	3, 27, 95
EaeI	YGGCCR	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	84
FaeI	CATG	1 cut(s)	187
FaiI	YATR	2 cut(s)	39, 185
FatI	CATG	1 cut(s)	183
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	2 cut(s)	215, 225
GluI	GCNGC	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	124
HapII	CCGG	1 cut(s)	232
HgaI	GACGC	1 cut(s)	22
Hin1II	CATG	1 cut(s)	187
HindIII	AAGCTT	1 cut(s)	170
HpaII	CCGG	1 cut(s)	232
HphI	GGTGA	1 cut(s)	61
Hpy188I	TCNGA	3 cut(s)	100, 107, 245
Hpy188III	TCNNGA	1 cut(s)	10
Hpy99I	CGWCG	2 cut(s)	16, 240
HpyCH4III	ACNGT	1 cut(s)	240
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
Hsp92II	CATG	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 27, 95
LpnPI	CCDG	4 cut(s)	71, 98, 177, 245
MaeI	CTAG	2 cut(s)	215, 225
MalI	GATC	3 cut(s)	5, 29, 97
MboI	GATC	3 cut(s)	3, 27, 95
MboII	GAAGA	1 cut(s)	58
MflI	RGATCY	1 cut(s)	27
MnlI	CCTC	2 cut(s)	41, 88
MspI	CCGG	1 cut(s)	232
MspR9I	CCNGG	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	164
NdeII	GATC	3 cut(s)	3, 27, 95
NlaIII	CATG	1 cut(s)	187
NlaIV	GGNNCC	2 cut(s)	230, 242
Pfl23II	CGTACG	1 cut(s)	190
PkrI	GCNGC	1 cut(s)	160
Ple19I	CGATCG	1 cut(s)	98
Psp6I	CCWGG	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	84
PspLI	CGTACG	1 cut(s)	190
PspN4I	GGNNCC	2 cut(s)	230, 242
PspPI	GGNCC	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	27
PvuI	CGATCG	1 cut(s)	98
RsaI	GTAC	2 cut(s)	53, 192
RsaNI	GTAC	2 cut(s)	52, 191
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	3 cut(s)	3, 27, 95
Sau96I	GGNCC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	86
SetI	ASST	3 cut(s)	90, 132, 174
SinI	GGWCC	1 cut(s)	88
SpeI	ACTAGT	1 cut(s)	214
SsiI	CCGC	2 cut(s)	75, 159
SspMI	CTAG	2 cut(s)	215, 225
StyD4I	CCNGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	240
TaqI	TCGA	2 cut(s)	11, 94
TauI	GCSGC	1 cut(s)	161
TspGWI	ACGGA	1 cut(s)	70
VpaK11BI	GGWCC	1 cut(s)	88
XspI	CTAG	2 cut(s)	215, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.