Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000982.1

Orthogroup ID

OG0009734

Physical Location & Seq

Genomic Coordinates Forward (+)

275392 .. 277354

Gene Structure 1963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000982.1_g000066.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atgtccctctctctccctcccgttatccaatcccgtctcggctctctctctctctgcctcgcctccgtccgcaccttcaaagagcacacctaccgcgtctactccgccctcttcgcctcagtctccagcgactgcactgcacgcgtcggggacgtgcatgagcctagatccaccatgatcatcccggcgcatgagtttgagatcctctcctgtgattggaacagtataacaactgcgtcatcgtcattgcctccgtcgacaaatcgatcaaggtttgggacgccaggtccatcggagcttcgatttgcttctcaacggccacagctacgccgtcagaaaagccaaattctcgccgcattggcaaagcttgatgacgtcgtgctcgtaggacttgtcagttccgttgcttcaatactagtaaggactagggattggcgtcagaaaatgatggacatactgaagagatttaattctgaagaagaagctgatggaatggatgaggatgttgggaagcatggtataatcattgagtttactgatctgggctatggtacaaggcgcaatgcaacatacttgcctgaggttgctgcgcatgaaggttggactcaaatagaagcaattgactcattgatgcggaaagcagggtatactgggaccatcaccgagtcacttcggaagcgtatacgattgacccgctggatttttcgtggtcgttcccgatttctcttttatggcgaccctgtgaatcctgataatcctcaattcgaccgagagtcctggtttaaagctcatagcgaggtgatagcgattaacagtgacttgattagtgacatggtcagttacttagttagtgacatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AMMECR1

Protein Analysis

286

Amino Acids

32.24

Weight (kDa)

7.76

Isoelectric Point (pI)

55.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009734)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318691 RchiOBHm_Chr4g0417811 RchiOBHm_Chr5g0056321
rosa_laevigata	RLG00000001224 RLG00000013183
rosa_multiflora	Rmu_sc0000982.1_g000066 Rmu_sc0004761.1_g000013 Rmu_sc0017725.1_g000002 Rmu_ssc0000259.1_g000041
rosa_roxburghii	Rroxscaffold_7G00180230
rosa_rugosa	Rorug01G0356200
rosa_samantha	Rh1AG035900 Rh1DG306000 Rh2BG076200 Rh2CG032100 Rh2CG078400 Rh2CG583600 Rh5BG380600 Rh5DG393700 Rh5DG523700 Rh7AG278300 Rh7CG297300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	378
Acc16I	TGCGCA	1 cut(s)	591
AccI	GTMKAC	4 cut(s)	99, 257, 647, 682
AccII	CGCG	2 cut(s)	96, 144
AciI	CCGC	6 cut(s)	70, 94, 105, 354, 634, 694
AclWI	GGATC	2 cut(s)	162, 196
AcoI	YGGCCR	1 cut(s)	317
AcsI	RAATTY	1 cut(s)	345
AcuI	CTGAAG	2 cut(s)	479, 495
AcyI	GRCGYC	3 cut(s)	281, 375, 436
AfaI	GTAC	1 cut(s)	553
AfiI	CCNNNNNNNGG	1 cut(s)	216
AflIII	ACRYGT	2 cut(s)	142, 855
AgsI	TTSAA	2 cut(s)	79, 411
AhdI	GACNNNNNGTC	2 cut(s)	285, 772
AhlI	ACTAGT	1 cut(s)	415
AjiI	CACGTC	1 cut(s)	154
AjnI	CCWGG	2 cut(s)	283, 776
AluBI	AGCT	5 cut(s)	298, 325, 367, 485, 788
AluI	AGCT	5 cut(s)	298, 325, 367, 485, 788
Alw21I	GWGCWC	2 cut(s)	87, 384
Alw26I	GTCTC	2 cut(s)	41, 127
AlwI	GGATC	2 cut(s)	162, 196
AlwNI	CAGNNNCTG	1 cut(s)	132
AoxI	GGCC	1 cut(s)	317
ApeKI	GCWGC	1 cut(s)	587
ApoI	RAATTY	1 cut(s)	345
AspLEI	GCGC	3 cut(s)	190, 561, 592
AspS9I	GGNCC	2 cut(s)	287, 654
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	2 cut(s)	652, 811
AvaII	GGWCC	2 cut(s)	287, 654
AxyI	CCTNAGG	1 cut(s)	579
Bbv12I	GWGCWC	2 cut(s)	87, 384
BbvI	GCAGC	1 cut(s)	574
BccI	CCATC	4 cut(s)	298, 442, 482, 665
BceAI	ACGGC	2 cut(s)	315, 332
BcgI	CGANNNNNNTGC	2 cut(s)	119, 153
BciT130I	CCWGG	2 cut(s)	285, 778
BclI	TGATCA	1 cut(s)	177
BcnI	CCSGG	1 cut(s)	185
BcoDI	GTCTC	2 cut(s)	41, 127
BcuI	ACTAGT	1 cut(s)	415
BfaI	CTAG	3 cut(s)	165, 416, 426
BglI	GCCNNNNNGGC	1 cut(s)	359
BisI	GCNGC	2 cut(s)	354, 588
BlsI	GCNGC	2 cut(s)	355, 589
Bme1390I	CCNGG	3 cut(s)	185, 285, 778
Bme18I	GGWCC	2 cut(s)	287, 654
BmeRI	GACNNNNNGTC	2 cut(s)	285, 772
BmgBI	CACGTC	1 cut(s)	154
BmgT120I	GGNCC	2 cut(s)	287, 654
BmiI	GGNNCC	1 cut(s)	655
BmrFI	CCNGG	3 cut(s)	185, 285, 778
BmrI	ACTGGG	1 cut(s)	660
BmsI	GCATC	1 cut(s)	621
BmuI	ACTGGG	1 cut(s)	660
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
BpmI	CTGGAG	1 cut(s)	109
BpuMI	CCSGG	1 cut(s)	185
Bsa29I	ATCGAT	1 cut(s)	265
BsaHI	GRCGYC	3 cut(s)	281, 375, 436
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse1I	ACTGG	1 cut(s)	655
Bse21I	CCTNAGG	1 cut(s)	579
Bse3DI	GCAATG	2 cut(s)	245, 568
BseBI	CCWGG	2 cut(s)	285, 778
BseCI	ATCGAT	1 cut(s)	265
BseGI	GGATG	3 cut(s)	180, 502, 508
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseMI	GCAATG	2 cut(s)	245, 568
BseMII	CTCAG	2 cut(s)	132, 570
BseNI	ACTGG	1 cut(s)	655
BseXI	GCAGC	1 cut(s)	574
BsgI	GTGCAG	2 cut(s)	118, 123
Bsh1236I	CGCG	2 cut(s)	96, 144
Bsh1285I	CGRYCG	1 cut(s)	769
BshFI	GGCC	1 cut(s)	319
BshVI	ATCGAT	1 cut(s)	265
BsiEI	CGRYCG	1 cut(s)	769
BsiHKAI	GWGCWC	2 cut(s)	87, 384
BsiSI	CCGG	1 cut(s)	185
BslFI	GGGAC	3 cut(s)	164, 292, 667
BslI	CCNNNNNNNGG	1 cut(s)	216
BsmAI	GTCTC	2 cut(s)	41, 127
BsmBI	CGTCTC	1 cut(s)	41
BsmFI	GGGAC	3 cut(s)	164, 292, 667
BsnI	GGCC	1 cut(s)	319
Bsp1286I	GDGCHC	2 cut(s)	87, 384
Bsp143I	GATC	5 cut(s)	167, 177, 201, 266, 538
BspACI	CCGC	6 cut(s)	70, 94, 105, 354, 634, 694
BspANI	GGCC	1 cut(s)	319
BspCNI	CTCAG	2 cut(s)	131, 571
BspDI	ATCGAT	1 cut(s)	265
BspFNI	CGCG	2 cut(s)	96, 144
BspLI	GGNNCC	1 cut(s)	655
BspPI	GGATC	2 cut(s)	162, 196
BsrDI	GCAATG	2 cut(s)	245, 568
BsrI	ACTGG	1 cut(s)	655
BssMI	GATC	5 cut(s)	167, 177, 201, 266, 538
BssNAI	GTATAC	2 cut(s)	648, 683
BssNI	GRCGYC	3 cut(s)	281, 375, 436
Bst1107I	GTATAC	2 cut(s)	648, 683
Bst2UI	CCWGG	2 cut(s)	285, 778
Bst4CI	ACNGT	2 cut(s)	224, 815
Bst6I	CTCTTC	2 cut(s)	116, 455
BstACI	GRCGYC	3 cut(s)	281, 375, 436
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	3 cut(s)	118, 579, 844
BstF5I	GGATG	3 cut(s)	180, 502, 508
BstFNI	CGCG	2 cut(s)	96, 144
BstHHI	GCGC	3 cut(s)	190, 561, 592
BstKTI	GATC	5 cut(s)	170, 180, 204, 269, 541
BstMAI	GTCTC	2 cut(s)	41, 127
BstMBI	GATC	5 cut(s)	167, 177, 201, 266, 538
BstMCI	CGRYCG	1 cut(s)	769
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 141, 359
BstNI	CCWGG	2 cut(s)	285, 778
BstNSI	RCATGY	1 cut(s)	859
BstSCI	CCNGG	3 cut(s)	183, 283, 776
BstUI	CGCG	2 cut(s)	96, 144
BstV1I	GCAGC	1 cut(s)	574
BstX2I	RGATCY	2 cut(s)	167, 201
BstYI	RGATCY	2 cut(s)	167, 201
BstZ17I	GTATAC	2 cut(s)	648, 683
Bsu15I	ATCGAT	1 cut(s)	265
Bsu36I	CCTNAGG	1 cut(s)	579
BsuRI	GGCC	1 cut(s)	319
BsuTUI	ATCGAT	1 cut(s)	265
BtrI	CACGTC	1 cut(s)	154
BtsCI	GGATG	3 cut(s)	180, 502, 508
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	2 cut(s)	135, 820
Cac8I	GCNNGC	1 cut(s)	142
CaiI	CAGNNNCTG	1 cut(s)	132
CfoI	GCGC	3 cut(s)	190, 561, 592
Cfr13I	GGNCC	2 cut(s)	287, 654
ClaI	ATCGAT	1 cut(s)	265
CseI	GACGC	5 cut(s)	85, 133, 225, 289, 425
Csp6I	GTAC	1 cut(s)	552
CviAII	CATG	7 cut(s)	158, 175, 191, 515, 593, 832, 856
CviQI	GTAC	1 cut(s)	552
DdeI	CTNAG	3 cut(s)	118, 579, 844
DpnI	GATC	5 cut(s)	169, 179, 203, 268, 540
DpnII	GATC	5 cut(s)	167, 177, 201, 266, 538
DraI	TTTAAA	1 cut(s)	784
DriI	GACNNNNNGTC	2 cut(s)	285, 772
EaeI	YGGCCR	1 cut(s)	317
Eam1104I	CTCTTC	2 cut(s)	116, 455
Eam1105I	GACNNNNNGTC	2 cut(s)	285, 772
EarI	CTCTTC	2 cut(s)	116, 455
EciI	GGCGGA	1 cut(s)	94
Eco47I	GGWCC	2 cut(s)	287, 654
Eco57I	CTGAAG	2 cut(s)	479, 495
Eco81I	CCTNAGG	1 cut(s)	579
EcoRII	CCWGG	2 cut(s)	283, 776
Esp3I	CGTCTC	1 cut(s)	41
FaeI	CATG	7 cut(s)	161, 178, 194, 518, 596, 835, 859
FaqI	GGGAC	3 cut(s)	164, 292, 667
FatI	CATG	7 cut(s)	157, 174, 190, 514, 592, 831, 855
FauI	CCCGC	1 cut(s)	701
FbaI	TGATCA	1 cut(s)	177
FblI	GTMKAC	4 cut(s)	99, 257, 647, 682
Fnu4HI	GCNGC	2 cut(s)	354, 588
FokI	GGATG	3 cut(s)	167, 509, 515
Fsp4HI	GCNGC	2 cut(s)	354, 588
FspBI	CTAG	3 cut(s)	165, 416, 426
FspI	TGCGCA	1 cut(s)	591
GlaI	GCGC	3 cut(s)	189, 560, 591
GluI	GCNGC	2 cut(s)	354, 588
GsuI	CTGGAG	1 cut(s)	109
HaeIII	GGCC	1 cut(s)	319
HapII	CCGG	1 cut(s)	185
HgaI	GACGC	5 cut(s)	85, 133, 225, 289, 425
HhaI	GCGC	3 cut(s)	190, 561, 592
Hin1I	GRCGYC	3 cut(s)	281, 375, 436
Hin1II	CATG	7 cut(s)	161, 178, 194, 518, 596, 835, 859
Hin6I	GCGC	3 cut(s)	188, 559, 590
HinP1I	GCGC	3 cut(s)	188, 559, 590
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	5 cut(s)	604, 623, 665, 745, 773
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	2 cut(s)	652, 811
Hpy166II	GTNNAC	5 cut(s)	100, 258, 534, 648, 683
Hpy188I	TCNGA	5 cut(s)	295, 336, 441, 475, 675
Hpy188III	TCNNGA	2 cut(s)	717, 749
Hpy8I	GTNNAC	5 cut(s)	100, 258, 534, 648, 683
Hpy99I	CGWCG	3 cut(s)	149, 259, 380
HpyAV	CCTTC	2 cut(s)	85, 590
HpyCH4III	ACNGT	2 cut(s)	224, 815
HpyCH4IV	ACGT	2 cut(s)	153, 375
HpyCH4V	TGCA	4 cut(s)	135, 140, 157, 566
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 141, 359
HpyF3I	CTNAG	3 cut(s)	118, 579, 844
HpySE526I	ACGT	2 cut(s)	153, 375
Hsp92I	GRCGYC	3 cut(s)	281, 375, 436
Hsp92II	CATG	7 cut(s)	161, 178, 194, 518, 596, 835, 859
HspAI	GCGC	3 cut(s)	188, 559, 590
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	5 cut(s)	167, 177, 201, 266, 538
LmnI	GCTCC	1 cut(s)	295
Lsp1109I	GCAGC	1 cut(s)	574
LweI	GCATC	1 cut(s)	621
MaeI	CTAG	3 cut(s)	165, 416, 426
MaeII	ACGT	2 cut(s)	153, 375
MaeIII	GTNAC	5 cut(s)	666, 815, 827, 839, 851
MalI	GATC	5 cut(s)	169, 179, 203, 268, 540
MboI	GATC	5 cut(s)	167, 177, 201, 266, 538
MboII	GAAGA	4 cut(s)	103, 472, 488, 491
MfeI	CAATTG	1 cut(s)	618
MflI	RGATCY	2 cut(s)	167, 201
MhlI	GDGCHC	2 cut(s)	87, 384
MluCI	AATT	4 cut(s)	345, 469, 618, 761
MluI	ACGCGT	1 cut(s)	142
MlyI	GAGTC	4 cut(s)	598, 617, 674, 782
MmeI	TCCRAC	1 cut(s)	581
MseI	TTAA	3 cut(s)	468, 783, 810
MspA1I	CMGCKG	1 cut(s)	696
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	3 cut(s)	185, 285, 778
MunI	CAATTG	1 cut(s)	618
MvaI	CCWGG	2 cut(s)	285, 778
MvnI	CGCG	2 cut(s)	96, 144
MwoI	GCNNNNNNNGC	3 cut(s)	113, 141, 359
NciI	CCSGG	1 cut(s)	185
NdeII	GATC	5 cut(s)	167, 177, 201, 266, 538
NlaIII	CATG	7 cut(s)	161, 178, 194, 518, 596, 835, 859
NlaIV	GGNNCC	1 cut(s)	655
NmeAIII	GCCGAG	1 cut(s)	18
NmuCI	GTSAC	4 cut(s)	666, 815, 827, 851
NsbI	TGCGCA	1 cut(s)	591
NspI	RCATGY	1 cut(s)	859
PciI	ACATGT	1 cut(s)	855
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PfeI	GAWTC	1 cut(s)	745
PflFI	GACNNNGTC	1 cut(s)	833
PkrI	GCNGC	2 cut(s)	355, 589
PleI	GAGTC	4 cut(s)	598, 617, 673, 781
PpsI	GAGTC	4 cut(s)	598, 617, 673, 781
PscI	ACATGT	1 cut(s)	855
Psp6I	CCWGG	2 cut(s)	283, 776
PspGI	CCWGG	2 cut(s)	283, 776
PspN4I	GGNNCC	1 cut(s)	655
PspPI	GGNCC	2 cut(s)	287, 654
PstNI	CAGNNNCTG	1 cut(s)	132
PsuI	RGATCY	2 cut(s)	167, 201
PsyI	GACNNNGTC	1 cut(s)	833
RsaI	GTAC	1 cut(s)	553
RsaNI	GTAC	1 cut(s)	552
SalI	GTCGAC	1 cut(s)	256
SaqAI	TTAA	3 cut(s)	468, 783, 810
SatI	GCNGC	2 cut(s)	354, 588
Sau3AI	GATC	5 cut(s)	167, 177, 201, 266, 538
Sau96I	GGNCC	2 cut(s)	287, 654
SchI	GAGTC	4 cut(s)	598, 617, 674, 782
ScrFI	CCNGG	3 cut(s)	185, 285, 778
SduI	GDGCHC	2 cut(s)	87, 384
SfaNI	GCATC	1 cut(s)	621
SinI	GGWCC	2 cut(s)	287, 654
SpeI	ACTAGT	1 cut(s)	415
Sse9I	AATT	4 cut(s)	345, 469, 618, 761
SsiI	CCGC	6 cut(s)	70, 94, 105, 354, 634, 694
SspMI	CTAG	3 cut(s)	165, 416, 426
StyD4I	CCNGG	3 cut(s)	183, 283, 776
TaaI	ACNGT	2 cut(s)	224, 815
TaiI	ACGT	2 cut(s)	156, 378
TaqI	TCGA	4 cut(s)	257, 265, 301, 765
TaqII	GACCGA	1 cut(s)	783
TasI	AATT	4 cut(s)	345, 469, 618, 761
TauI	GCSGC	1 cut(s)	356
TfiI	GAWTC	1 cut(s)	745
Tru1I	TTAA	3 cut(s)	468, 783, 810
Tru9I	TTAA	3 cut(s)	468, 783, 810
TscAI	CASTG	2 cut(s)	142, 820
TseFI	GTSAC	4 cut(s)	666, 815, 827, 851
TseI	GCWGC	1 cut(s)	587
Tsp45I	GTSAC	4 cut(s)	666, 815, 827, 851
TspDTI	ATGAA	1 cut(s)	609
TspGWI	ACGGA	3 cut(s)	55, 243, 391
TspRI	CASTG	2 cut(s)	142, 820
Tth111I	GACNNNGTC	1 cut(s)	833
VpaK11BI	GGWCC	2 cut(s)	287, 654
XapI	RAATTY	1 cut(s)	345
XceI	RCATGY	1 cut(s)	859
XmiI	GTMKAC	4 cut(s)	99, 257, 647, 682
XspI	CTAG	3 cut(s)	165, 416, 426
ZraI	GACGTC	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.