Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009734

Physical Location & Seq

Genomic Coordinates Forward (+)

5865920 .. 5866117

Gene Structure 198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG076200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGATCATCCCGGCGCATGAGTTCGAGATCCTCTCCTGCGATTGGAACAAGTACAACAACTGCGTCATCGTCATTGCCTCCGTCGACAAATCGATCATGGTTTGGGACGCCAGGTCCATCGGAGCTTCGATTTGCTTCTCAACGGCCACAGCTACGCCGTCAGAAAAGCCAAATTCTCGCCGCATTGGCAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000268 GO:0001501 GO:0001503 GO:0001764 GO:0001958 GO:0003674 GO:0005048 GO:0005053 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005782 GO:0005829 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006662 GO:0006810 GO:0006886 GO:0006928 GO:0006996 GO:0007031 GO:0007275 GO:0007399 GO:0008104 GO:0008150 GO:0008152 GO:0008610 GO:0008611 GO:0009056 GO:0009058 GO:0009062 GO:0009653 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016477 GO:0016558 GO:0016560 GO:0017038 GO:0018904 GO:0019395 GO:0019752 GO:0019899 GO:0022008 GO:0030154 GO:0030258 GO:0031090 GO:0031461 GO:0031903 GO:0031907 GO:0031974 GO:0032501 GO:0032502 GO:0032787 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034440 GO:0034613 GO:0036075 GO:0040011 GO:0042277 GO:0042579 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046485 GO:0046504 GO:0046907 GO:0046983 GO:0048513 GO:0048699 GO:0048705 GO:0048731 GO:0048856 GO:0048869 GO:0048870 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051674 GO:0055085 GO:0055114 GO:0060348 GO:0060349 GO:0060350 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0080008 GO:0097384 GO:0098588 GO:0098805 GO:1901503 GO:1901575 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

WD40

Protein Analysis

65

Amino Acids

7.16

Weight (kDa)

7.73

Isoelectric Point (pI)

44.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009734)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318691 RchiOBHm_Chr4g0417811 RchiOBHm_Chr5g0056321
rosa_laevigata	RLG00000001224 RLG00000013183
rosa_multiflora	Rmu_sc0000982.1_g000066 Rmu_sc0004761.1_g000013 Rmu_sc0017725.1_g000002 Rmu_ssc0000259.1_g000041
rosa_roxburghii	Rroxscaffold_7G00180230
rosa_rugosa	Rorug01G0356200
rosa_samantha	Rh1AG035900 Rh1DG306000 Rh2BG076200 Rh2CG032100 Rh2CG078400 Rh2CG583600 Rh5BG380600 Rh5DG393700 Rh5DG523700 Rh7AG278300 Rh7CG297300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	84
AciI	CCGC	1 cut(s)	181
AclWI	GGATC	1 cut(s)	22
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	172
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	1 cut(s)	42
AhdI	GACNNNNNGTC	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	110
AluBI	AGCT	3 cut(s)	125, 152, 194
AluI	AGCT	3 cut(s)	125, 152, 194
AlwI	GGATC	1 cut(s)	22
AoxI	GGCC	1 cut(s)	144
ApoI	RAATTY	1 cut(s)	172
AspLEI	GCGC	1 cut(s)	16
AspS9I	GGNCC	1 cut(s)	114
AsuC2I	CCSGG	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	114
BccI	CCATC	1 cut(s)	125
BceAI	ACGGC	2 cut(s)	142, 159
BciT130I	CCWGG	1 cut(s)	112
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	11
BglI	GCCNNNNNGGC	1 cut(s)	186
BisI	GCNGC	1 cut(s)	181
BlsI	GCNGC	1 cut(s)	182
Bme1390I	CCNGG	2 cut(s)	11, 112
Bme18I	GGWCC	1 cut(s)	114
BmeRI	GACNNNNNGTC	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	114
BmrFI	CCNGG	2 cut(s)	11, 112
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
BpuMI	CCSGG	1 cut(s)	11
Bsa29I	ATCGAT	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	42
Bse3DI	GCAATG	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	112
BseCI	ATCGAT	1 cut(s)	92
BseGI	GGATG	1 cut(s)	6
BseLI	CCNNNNNNNGG	1 cut(s)	42
BseMI	GCAATG	1 cut(s)	72
BshFI	GGCC	1 cut(s)	146
BshVI	ATCGAT	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	11
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	146
Bsp143I	GATC	3 cut(s)	3, 27, 93
BspACI	CCGC	1 cut(s)	181
BspANI	GGCC	1 cut(s)	146
BspDI	ATCGAT	1 cut(s)	92
BspPI	GGATC	1 cut(s)	22
BsrDI	GCAATG	1 cut(s)	72
BssMI	GATC	3 cut(s)	3, 27, 93
BssNI	GRCGYC	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	112
BstACI	GRCGYC	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	6
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	3 cut(s)	6, 30, 96
BstMBI	GATC	3 cut(s)	3, 27, 93
BstMWI	GCNNNNNNNGC	1 cut(s)	186
BstNI	CCWGG	1 cut(s)	112
BstSCI	CCNGG	2 cut(s)	9, 110
BstX2I	RGATCY	1 cut(s)	27
BstYI	RGATCY	1 cut(s)	27
Bsu15I	ATCGAT	1 cut(s)	92
BsuRI	GGCC	1 cut(s)	146
BsuTUI	ATCGAT	1 cut(s)	92
BtsCI	GGATG	1 cut(s)	6
CfoI	GCGC	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	114
ClaI	ATCGAT	1 cut(s)	92
CseI	GACGC	2 cut(s)	52, 116
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	2 cut(s)	17, 97
CviJI	RGCY	5 cut(s)	125, 146, 152, 169, 194
CviKI_1	RGCY	5 cut(s)	125, 146, 152, 169, 194
CviQI	GTAC	1 cut(s)	52
DpnI	GATC	3 cut(s)	5, 29, 95
DpnII	GATC	3 cut(s)	3, 27, 93
DriI	GACNNNNNGTC	1 cut(s)	112
EaeI	YGGCCR	1 cut(s)	144
Eam1105I	GACNNNNNGTC	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	110
FaeI	CATG	2 cut(s)	20, 100
FaiI	YATR	2 cut(s)	18, 98
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	2 cut(s)	16, 96
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	181
Fsp4HI	GCNGC	1 cut(s)	181
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	1 cut(s)	181
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	1 cut(s)	11
HgaI	GACGC	2 cut(s)	52, 116
HhaI	GCGC	1 cut(s)	16
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	2 cut(s)	20, 100
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	192
HpaII	CCGG	1 cut(s)	11
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	2 cut(s)	122, 163
Hpy188III	TCNNGA	1 cut(s)	25
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	1 cut(s)	86
HpyF10VI	GCNNNNNNNGC	1 cut(s)	186
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	2 cut(s)	20, 100
HspAI	GCGC	1 cut(s)	14
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 27, 93
LmnI	GCTCC	1 cut(s)	122
LpnPI	CCDG	4 cut(s)	24, 49, 97, 124
MalI	GATC	3 cut(s)	5, 29, 95
MboI	GATC	3 cut(s)	3, 27, 93
MflI	RGATCY	1 cut(s)	27
MluCI	AATT	1 cut(s)	172
MnlI	CCTC	2 cut(s)	41, 88
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	2 cut(s)	11, 112
MvaI	CCWGG	1 cut(s)	112
MwoI	GCNNNNNNNGC	1 cut(s)	186
NciI	CCSGG	1 cut(s)	11
NdeII	GATC	3 cut(s)	3, 27, 93
NlaIII	CATG	2 cut(s)	20, 100
PkrI	GCNGC	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	110
PspPI	GGNCC	1 cut(s)	114
PsuI	RGATCY	1 cut(s)	27
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SalI	GTCGAC	1 cut(s)	83
SatI	GCNGC	1 cut(s)	181
Sau3AI	GATC	3 cut(s)	3, 27, 93
Sau96I	GGNCC	1 cut(s)	114
ScrFI	CCNGG	2 cut(s)	11, 112
SetI	ASST	4 cut(s)	116, 127, 154, 196
SinI	GGWCC	1 cut(s)	114
Sse9I	AATT	1 cut(s)	172
SsiI	CCGC	1 cut(s)	181
StyD4I	CCNGG	2 cut(s)	9, 110
TaqI	TCGA	4 cut(s)	24, 84, 92, 128
TasI	AATT	1 cut(s)	172
TatI	WGTACW	1 cut(s)	51
TauI	GCSGC	1 cut(s)	183
TspGWI	ACGGA	1 cut(s)	70
VpaK11BI	GGWCC	1 cut(s)	114
XapI	RAATTY	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.