RLG00000013183

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0009734
Physical Location & Seq
Reverse (-)
27186423 .. 27188840
2418 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013183

Sequence Viewer

Length: 501 bp
ATGCGTTCGAGATCCTCTCCTGCGATTGGAACAAGAACGACGAATGCATCATCGCCACCACCTCCGTCGACAAATCGATCAAGGTTTGGCACGCCAGGTACATCAGAGCTCCGATTTGGTGGTCAACGGCCACAGCTACGCACTCAGAAAAGCCAAATTCTCGCCGCACCGGCAAAGCTTGATGATGTTGTGCTCCTACAGCTCCGGACTTGGATCAATGACTCTGAAAACTACATTGCCGTCCCCATCGATTATCGCCTAGTGATTCGCGACACTCTCTCCAAGGTACCTGATTTGGAGCTGTATGAGAACAGAGACGAGGCTGCGAAAAGAGAAGAGGTTTTTGGCTGCATTGGTCAGTTTTATGTGGTGAAAGAAACTGATGGTGTAGCTGCAATGTGCTCTCAACATGCTCGAGTGAGATACTGGGGGACGATTACAAGATTAAAGTTTGGAACTACAAGATGCATAGATGTCTTTTTACTCTTCTCGGGCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.64

Weight (kDa)

9.5

Isoelectric Point (pI)

46.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 286
AccB1I GGYRCC 1 cut(s) 286
AccI GTMKAC 1 cut(s) 68
AccII CGCG 1 cut(s) 270
AccIII TCCGGA 1 cut(s) 204
AciI CCGC 1 cut(s) 165
AclWI GGATC 2 cut(s) 6, 221
AcoI YGGCCR 1 cut(s) 128
AcsI RAATTY 1 cut(s) 156
AfaI GTAC 2 cut(s) 100, 288
AfiI CCNNNNNNNGG 1 cut(s) 26
AjnI CCWGG 1 cut(s) 94
AjuI GAANNNNNNNTTGG 2 cut(s) 327, 359
AluBI AGCT 6 cut(s) 109, 136, 178, 202, 301, 392
AluI AGCT 6 cut(s) 109, 136, 178, 202, 301, 392
Alw21I GWGCWC 3 cut(s) 111, 195, 404
Alw26I GTCTC 1 cut(s) 309
AlwI GGATC 2 cut(s) 6, 221
Ama87I CYCGRG 2 cut(s) 414, 490
Aor13HI TCCGGA 1 cut(s) 204
AoxI GGCC 1 cut(s) 128
ApeKI GCWGC 3 cut(s) 323, 348, 392
ApoI RAATTY 1 cut(s) 156
Asp718I GGTACC 1 cut(s) 286
AsuHPI GGTGA 1 cut(s) 382
AvaI CYCGRG 2 cut(s) 414, 490
BanI GGYRCC 1 cut(s) 286
BanII GRGCYC 1 cut(s) 111
Bbv12I GWGCWC 3 cut(s) 111, 195, 404
BbvI GCAGC 3 cut(s) 310, 335, 379
BccI CCATC 2 cut(s) 254, 377
BceAI ACGGC 2 cut(s) 143, 224
BciT130I CCWGG 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 309
BfaI CTAG 2 cut(s) 260, 499
BfmI CTRYAG 1 cut(s) 197
BglI GCCNNNNNGGC 1 cut(s) 170
BisI GCNGC 4 cut(s) 165, 324, 349, 393
BlsI GCNGC 4 cut(s) 166, 325, 350, 394
Bme1390I CCNGG 1 cut(s) 96
BmeT110I CYCGRG 2 cut(s) 414, 490
BmiI GGNNCC 1 cut(s) 288
BmrFI CCNGG 1 cut(s) 96
BmrI ACTGGG 1 cut(s) 436
BmsI GCATC 2 cut(s) 56, 455
BmuI ACTGGG 1 cut(s) 436
BplI GAGNNNNNCTC 1 cut(s) 33
Bsa29I ATCGAT 2 cut(s) 76, 249
BsaJI CCNNGG 1 cut(s) 282
BsaWI WCCGGW 1 cut(s) 204
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse118I RCCGGY 1 cut(s) 169
Bse1I ACTGG 1 cut(s) 431
Bse3DI GCAATG 2 cut(s) 234, 402
BseAI TCCGGA 1 cut(s) 204
BseBI CCWGG 1 cut(s) 96
BseCI ATCGAT 2 cut(s) 76, 249
BseDI CCNNGG 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMI GCAATG 2 cut(s) 234, 402
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 431
BseXI GCAGC 3 cut(s) 310, 335, 379
Bsh1236I CGCG 1 cut(s) 270
BshFI GGCC 1 cut(s) 130
BshNI GGYRCC 1 cut(s) 286
BshVI ATCGAT 2 cut(s) 76, 249
BsiHKAI GWGCWC 3 cut(s) 111, 195, 404
BsiHKCI CYCGRG 2 cut(s) 414, 490
BsiSI CCGG 2 cut(s) 170, 205
BslFI GGGAC 2 cut(s) 227, 445
BslI CCNNNNNNNGG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 309
BsmBI CGTCTC 1 cut(s) 309
BsmFI GGGAC 2 cut(s) 227, 445
BsmI GAATGC 1 cut(s) 49
BsnI GGCC 1 cut(s) 130
BsoBI CYCGRG 2 cut(s) 414, 490
Bsp1286I GDGCHC 3 cut(s) 111, 195, 404
Bsp13I TCCGGA 1 cut(s) 204
Bsp143I GATC 3 cut(s) 11, 77, 213
Bsp68I TCGCGA 1 cut(s) 270
BspACI CCGC 1 cut(s) 165
BspANI GGCC 1 cut(s) 130
BspCNI CTCAG 1 cut(s) 157
BspDI ATCGAT 2 cut(s) 76, 249
BspEI TCCGGA 1 cut(s) 204
BspFNI CGCG 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 288
BspPI GGATC 2 cut(s) 6, 221
BspT107I GGYRCC 1 cut(s) 286
BsrDI GCAATG 2 cut(s) 234, 402
BsrFI RCCGGY 1 cut(s) 169
BsrI ACTGG 1 cut(s) 431
BssAI RCCGGY 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 3 cut(s) 11, 77, 213
BssT1I CCWWGG 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 96
Bst6I CTCTTC 2 cut(s) 330, 491
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 1 cut(s) 144
BstFNI CGCG 1 cut(s) 270
BstKTI GATC 3 cut(s) 14, 80, 216
BstMAI GTCTC 1 cut(s) 309
BstMBI GATC 3 cut(s) 11, 77, 213
BstMWI GCNNNNNNNGC 2 cut(s) 170, 199
BstNI CCWGG 1 cut(s) 96
BstNSI RCATGY 1 cut(s) 413
BstSCI CCNGG 1 cut(s) 94
BstSFI CTRYAG 1 cut(s) 197
BstUI CGCG 1 cut(s) 270
BstV1I GCAGC 3 cut(s) 310, 335, 379
BstX2I RGATCY 1 cut(s) 11
BstYI RGATCY 1 cut(s) 11
Bsu15I ATCGAT 2 cut(s) 76, 249
BsuRI GGCC 1 cut(s) 130
BsuTUI ATCGAT 2 cut(s) 76, 249
BtgZI GCGATG 1 cut(s) 36
BtuMI TCGCGA 1 cut(s) 270
Cac8I GCNNGC 1 cut(s) 92
Cfr10I RCCGGY 1 cut(s) 169
ClaI ATCGAT 2 cut(s) 76, 249
Csp6I GTAC 2 cut(s) 99, 287
CviAII CATG 1 cut(s) 410
CviQI GTAC 2 cut(s) 99, 287
DdeI CTNAG 1 cut(s) 144
DpnI GATC 3 cut(s) 13, 79, 215
DpnII GATC 3 cut(s) 11, 77, 213
EaeI YGGCCR 1 cut(s) 128
Eam1104I CTCTTC 2 cut(s) 330, 491
EarI CTCTTC 2 cut(s) 330, 491
Ecl136II GAGCTC 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 282
Eco24I GRGCYC 1 cut(s) 111
Eco53kI GAGCTC 1 cut(s) 109
Eco88I CYCGRG 2 cut(s) 414, 490
EcoICRI GAGCTC 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 282
EcoT22I ATGCAT 2 cut(s) 49, 470
EcoT38I GRGCYC 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 282
Esp3I CGTCTC 1 cut(s) 309
FaeI CATG 1 cut(s) 413
FaiI YATR 4 cut(s) 306, 366, 411, 470
FaqI GGGAC 2 cut(s) 227, 445
FatI CATG 1 cut(s) 409
FblI GTMKAC 1 cut(s) 68
Fnu4HI GCNGC 4 cut(s) 165, 324, 349, 393
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 4 cut(s) 165, 324, 349, 393
FspBI CTAG 2 cut(s) 260, 499
GluI GCNGC 4 cut(s) 165, 324, 349, 393
HaeIII GGCC 1 cut(s) 130
HapII CCGG 2 cut(s) 170, 205
Hin1II CATG 1 cut(s) 413
HincII GTYRAC 2 cut(s) 69, 125
HindII GTYRAC 2 cut(s) 69, 125
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 2 cut(s) 221, 265
HpaII CCGG 2 cut(s) 170, 205
HphI GGTGA 1 cut(s) 382
Hpy166II GTNNAC 2 cut(s) 69, 125
Hpy188I TCNGA 4 cut(s) 106, 113, 147, 226
Hpy188III TCNNGA 3 cut(s) 9, 205, 269
Hpy8I GTNNAC 2 cut(s) 69, 125
Hpy99I CGWCG 2 cut(s) 43, 70
HpyCH4V TGCA 4 cut(s) 47, 351, 395, 468
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 199
HpyF3I CTNAG 1 cut(s) 144
Hsp92II CATG 1 cut(s) 413
Kpn2I TCCGGA 1 cut(s) 204
KpnI GGTACC 1 cut(s) 290
Kzo9I GATC 3 cut(s) 11, 77, 213
LmnI GCTCC 4 cut(s) 114, 198, 207, 298
LpnPI CCDG 7 cut(s) 33, 81, 108, 183, 218, 303, 412
Lsp1109I GCAGC 3 cut(s) 310, 335, 379
LweI GCATC 2 cut(s) 56, 455
MaeI CTAG 2 cut(s) 260, 499
MalI GATC 3 cut(s) 13, 79, 215
MboI GATC 3 cut(s) 11, 77, 213
MboII GAAGA 2 cut(s) 347, 478
MflI RGATCY 1 cut(s) 11
MhlI GDGCHC 3 cut(s) 111, 195, 404
MluCI AATT 1 cut(s) 156
MlyI GAGTC 1 cut(s) 215
MnlI CCTC 4 cut(s) 25, 72, 313, 331
Mph1103I ATGCAT 2 cut(s) 49, 470
MroI TCCGGA 1 cut(s) 204
MseI TTAA 1 cut(s) 446
MspI CCGG 2 cut(s) 170, 205
MspR9I CCNGG 1 cut(s) 96
Mva1269I GAATGC 1 cut(s) 49
MvaI CCWGG 1 cut(s) 96
MvnI CGCG 1 cut(s) 270
MwoI GCNNNNNNNGC 2 cut(s) 170, 199
NdeII GATC 3 cut(s) 11, 77, 213
NlaIII CATG 1 cut(s) 413
NlaIV GGNNCC 1 cut(s) 288
NruI TCGCGA 1 cut(s) 270
NsiI ATGCAT 2 cut(s) 49, 470
NspI RCATGY 1 cut(s) 413
PaeR7I CTCGAG 1 cut(s) 414
PctI GAATGC 1 cut(s) 49
PfeI GAWTC 1 cut(s) 265
PkrI GCNGC 4 cut(s) 166, 325, 350, 394
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
Psp124BI GAGCTC 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 94
PspGI CCWGG 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 288
PspXI VCTCGAGB 1 cut(s) 414
PsuI RGATCY 1 cut(s) 11
RruI TCGCGA 1 cut(s) 270
RsaI GTAC 2 cut(s) 100, 288
RsaNI GTAC 2 cut(s) 99, 287
SacI GAGCTC 1 cut(s) 111
SalI GTCGAC 1 cut(s) 67
SaqAI TTAA 1 cut(s) 446
SatI GCNGC 4 cut(s) 165, 324, 349, 393
Sau3AI GATC 3 cut(s) 11, 77, 213
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 1 cut(s) 96
SduI GDGCHC 3 cut(s) 111, 195, 404
SfaNI GCATC 2 cut(s) 56, 455
SfcI CTRYAG 1 cut(s) 197
Sfr274I CTCGAG 1 cut(s) 414
SlaI CTCGAG 1 cut(s) 414
SmlI CTYRAG 1 cut(s) 414
SmoI CTYRAG 1 cut(s) 414
Sse9I AATT 1 cut(s) 156
SsiI CCGC 1 cut(s) 165
SspMI CTAG 2 cut(s) 260, 499
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 1 cut(s) 94
StyI CCWWGG 1 cut(s) 282
TaqI TCGA 5 cut(s) 8, 68, 76, 249, 415
TasI AATT 1 cut(s) 156
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 1 cut(s) 265
Tru1I TTAA 1 cut(s) 446
Tru9I TTAA 1 cut(s) 446
TseI GCWGC 3 cut(s) 323, 348, 392
TspGWI ACGGA 1 cut(s) 54
XapI RAATTY 1 cut(s) 156
XceI RCATGY 1 cut(s) 413
XhoI CTCGAG 1 cut(s) 414
XmiI GTMKAC 1 cut(s) 68
XspI CTAG 2 cut(s) 260, 499
Zsp2I ATGCAT 2 cut(s) 49, 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.