Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004761.1

Orthogroup ID

OG0009734

Physical Location & Seq

Genomic Coordinates Reverse (-)

57927 .. 58817

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004761.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atgccactggcacctctcccttccccttctcgacccttgccaatctctctctctctacgacgcgtctgggatgtgcgtgagcctagatctgccatgatcatcccagcgcatgagttcgagatcctctcctgcgattggaacaagaacgacgaatgcatcatcgccaccacctccgtcgacaaatcgatcaagctccggccttggatcaatgattctgaaaactatgttgccgtcgccgtcgattatcgcctagtgattcgcgacactctctccttcaaggtacctgatttggagctgtatgagaatagagacgaggctgcgaaaagagaagaggttcttggctacattggtcaggtagttgatctctatctgtgtcgctattattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000268 GO:0001501 GO:0001503 GO:0001764 GO:0001958 GO:0003674 GO:0005048 GO:0005053 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005782 GO:0005829 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006662 GO:0006810 GO:0006886 GO:0006928 GO:0006996 GO:0007031 GO:0007275 GO:0007399 GO:0008104 GO:0008150 GO:0008152 GO:0008610 GO:0008611 GO:0009056 GO:0009058 GO:0009062 GO:0009653 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016477 GO:0016558 GO:0016560 GO:0017038 GO:0018904 GO:0019395 GO:0019752 GO:0019899 GO:0022008 GO:0030154 GO:0030258 GO:0031090 GO:0031461 GO:0031903 GO:0031907 GO:0031974 GO:0032501 GO:0032502 GO:0032787 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034440 GO:0034613 GO:0036075 GO:0040011 GO:0042277 GO:0042579 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046485 GO:0046504 GO:0046907 GO:0046983 GO:0048513 GO:0048699 GO:0048705 GO:0048731 GO:0048856 GO:0048869 GO:0048870 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051674 GO:0055085 GO:0055114 GO:0060348 GO:0060349 GO:0060350 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0080008 GO:0097384 GO:0098588 GO:0098805 GO:1901503 GO:1901575 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

WD40

Protein Analysis

128

Amino Acids

14.86

Weight (kDa)

5.02

Isoelectric Point (pI)

52.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009734)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318691 RchiOBHm_Chr4g0417811 RchiOBHm_Chr5g0056321
rosa_laevigata	RLG00000001224 RLG00000013183
rosa_multiflora	Rmu_sc0000982.1_g000066 Rmu_sc0004761.1_g000013 Rmu_sc0017725.1_g000002 Rmu_ssc0000259.1_g000041
rosa_roxburghii	Rroxscaffold_7G00180230
rosa_rugosa	Rorug01G0356200
rosa_samantha	Rh1AG035900 Rh1DG306000 Rh2BG076200 Rh2CG032100 Rh2CG078400 Rh2CG583600 Rh5BG380600 Rh5DG393700 Rh5DG523700 Rh7AG278300 Rh7CG297300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	280
AccB1I	GGYRCC	2 cut(s)	10, 280
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	2 cut(s)	63, 261
AclWI	GGATC	2 cut(s)	115, 212
AfaI	GTAC	1 cut(s)	282
AfiI	CCNNNNNNNGG	1 cut(s)	135
AflIII	ACRYGT	1 cut(s)	61
AgsI	TTSAA	1 cut(s)	277
AjuI	GAANNNNNNNTTGG	2 cut(s)	321, 353
AluBI	AGCT	2 cut(s)	193, 295
AluI	AGCT	2 cut(s)	193, 295
Alw26I	GTCTC	1 cut(s)	303
AlwI	GGATC	2 cut(s)	115, 212
AoxI	GGCC	1 cut(s)	197
ApeKI	GCWGC	1 cut(s)	317
Asp700I	GAANNNNTTC	1 cut(s)	333
Asp718I	GGTACC	1 cut(s)	280
AspLEI	GCGC	1 cut(s)	109
BanI	GGYRCC	2 cut(s)	10, 280
BbvI	GCAGC	1 cut(s)	304
BceAI	ACGGC	2 cut(s)	215, 221
BclI	TGATCA	1 cut(s)	96
BcoDI	GTCTC	1 cut(s)	303
BfaI	CTAG	2 cut(s)	84, 251
BglII	AGATCT	1 cut(s)	86
BisI	GCNGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	319
BmiI	GGNNCC	2 cut(s)	12, 282
BmsI	GCATC	1 cut(s)	165
BplI	GAGNNNNNCTC	2 cut(s)	110, 142
Bsa29I	ATCGAT	1 cut(s)	185
BsaBI	GATNNNNATC	1 cut(s)	366
BsaJI	CCNNGG	1 cut(s)	200
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse1I	ACTGG	1 cut(s)	12
Bse8I	GATNNNNATC	1 cut(s)	366
BseCI	ATCGAT	1 cut(s)	185
BseDI	CCNNGG	1 cut(s)	200
BseGI	GGATG	2 cut(s)	76, 99
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseNI	ACTGG	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	304
BseYI	CCCAGC	1 cut(s)	103
Bsh1236I	CGCG	2 cut(s)	63, 261
BshFI	GGCC	1 cut(s)	199
BshNI	GGYRCC	2 cut(s)	10, 280
BshVI	ATCGAT	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	196
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	1 cut(s)	303
BsmBI	CGTCTC	1 cut(s)	303
BsmI	GAATGC	1 cut(s)	158
BsnI	GGCC	1 cut(s)	199
Bsp143I	GATC	6 cut(s)	86, 96, 120, 186, 204, 361
Bsp68I	TCGCGA	1 cut(s)	261
BspANI	GGCC	1 cut(s)	199
BspDI	ATCGAT	1 cut(s)	185
BspFNI	CGCG	2 cut(s)	63, 261
BspLI	GGNNCC	2 cut(s)	12, 282
BspPI	GGATC	2 cut(s)	115, 212
BspT107I	GGYRCC	2 cut(s)	10, 280
BsrI	ACTGG	1 cut(s)	12
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	6 cut(s)	86, 96, 120, 186, 204, 361
BssT1I	CCWWGG	1 cut(s)	200
Bst6I	CTCTTC	1 cut(s)	324
BstF5I	GGATG	2 cut(s)	76, 99
BstFNI	CGCG	2 cut(s)	63, 261
BstHHI	GCGC	1 cut(s)	109
BstKTI	GATC	6 cut(s)	89, 99, 123, 189, 207, 364
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	6 cut(s)	86, 96, 120, 186, 204, 361
BstUI	CGCG	2 cut(s)	63, 261
BstV1I	GCAGC	1 cut(s)	304
BstX2I	RGATCY	2 cut(s)	86, 120
BstYI	RGATCY	2 cut(s)	86, 120
Bsu15I	ATCGAT	1 cut(s)	185
BsuRI	GGCC	1 cut(s)	199
BsuTUI	ATCGAT	1 cut(s)	185
BtgZI	GCGATG	1 cut(s)	145
BtsCI	GGATG	2 cut(s)	76, 99
BtsIMutI	CAGTG	1 cut(s)	5
BtuMI	TCGCGA	1 cut(s)	261
CfoI	GCGC	1 cut(s)	109
ClaI	ATCGAT	1 cut(s)	185
CseI	GACGC	2 cut(s)	52, 69
Csp6I	GTAC	1 cut(s)	281
CviAII	CATG	2 cut(s)	94, 110
CviJI	RGCY	6 cut(s)	82, 193, 199, 295, 317, 342
CviKI_1	RGCY	6 cut(s)	82, 193, 199, 295, 317, 342
CviQI	GTAC	1 cut(s)	281
DpnI	GATC	6 cut(s)	88, 98, 122, 188, 206, 363
DpnII	GATC	6 cut(s)	86, 96, 120, 186, 204, 361
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco130I	CCWWGG	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	200
EcoT22I	ATGCAT	1 cut(s)	158
ErhI	CCWWGG	1 cut(s)	200
Esp3I	CGTCTC	1 cut(s)	303
FaeI	CATG	2 cut(s)	97, 113
FaiI	YATR	4 cut(s)	95, 111, 225, 300
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FatI	CATG	2 cut(s)	93, 109
FbaI	TGATCA	1 cut(s)	96
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	1 cut(s)	318
FokI	GGATG	2 cut(s)	83, 86
Fsp4HI	GCNGC	1 cut(s)	318
FspBI	CTAG	2 cut(s)	84, 251
GlaI	GCGC	1 cut(s)	108
GluI	GCNGC	1 cut(s)	318
GsaI	CCCAGC	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	199
HapII	CCGG	1 cut(s)	196
HgaI	GACGC	2 cut(s)	52, 69
HhaI	GCGC	1 cut(s)	109
Hin1II	CATG	2 cut(s)	97, 113
Hin6I	GCGC	1 cut(s)	107
HinP1I	GCGC	1 cut(s)	107
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	2 cut(s)	212, 256
HpaII	CCGG	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	3 cut(s)	30, 118, 260
Hpy8I	GTNNAC	1 cut(s)	178
Hpy99I	CGWCG	5 cut(s)	63, 152, 179, 236, 242
HpyAV	CCTTC	3 cut(s)	30, 36, 283
HpyCH4V	TGCA	1 cut(s)	156
Hsp92II	CATG	2 cut(s)	97, 113
HspAI	GCGC	1 cut(s)	107
KpnI	GGTACC	1 cut(s)	284
Ksp22I	TGATCA	1 cut(s)	96
Kzo9I	GATC	6 cut(s)	86, 96, 120, 186, 204, 361
LmnI	GCTCC	2 cut(s)	198, 292
LpnPI	CCDG	6 cut(s)	52, 117, 142, 209, 297, 338
Lsp1109I	GCAGC	1 cut(s)	304
LweI	GCATC	1 cut(s)	165
MaeI	CTAG	2 cut(s)	84, 251
MalI	GATC	6 cut(s)	88, 98, 122, 188, 206, 363
MboI	GATC	6 cut(s)	86, 96, 120, 186, 204, 361
MboII	GAAGA	1 cut(s)	341
MflI	RGATCY	2 cut(s)	86, 120
MluI	ACGCGT	1 cut(s)	61
MnlI	CCTC	5 cut(s)	24, 134, 181, 307, 325
Mph1103I	ATGCAT	1 cut(s)	158
MroXI	GAANNNNTTC	1 cut(s)	333
MspI	CCGG	1 cut(s)	196
Mva1269I	GAATGC	1 cut(s)	158
MvnI	CGCG	2 cut(s)	63, 261
NdeII	GATC	6 cut(s)	86, 96, 120, 186, 204, 361
NlaIII	CATG	2 cut(s)	97, 113
NlaIV	GGNNCC	2 cut(s)	12, 282
NruI	TCGCGA	1 cut(s)	261
NsiI	ATGCAT	1 cut(s)	158
PctI	GAATGC	1 cut(s)	158
PdmI	GAANNNNTTC	1 cut(s)	333
PfeI	GAWTC	2 cut(s)	212, 256
PkrI	GCNGC	1 cut(s)	319
PspFI	CCCAGC	1 cut(s)	103
PspN4I	GGNNCC	2 cut(s)	12, 282
PsuI	RGATCY	2 cut(s)	86, 120
RruI	TCGCGA	1 cut(s)	261
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
SalI	GTCGAC	1 cut(s)	176
SatI	GCNGC	1 cut(s)	318
Sau3AI	GATC	6 cut(s)	86, 96, 120, 186, 204, 361
SetI	ASST	8 cut(s)	16, 173, 195, 282, 286, 297, 336, 357
SfaNI	GCATC	1 cut(s)	165
SspMI	CTAG	2 cut(s)	84, 251
StyI	CCWWGG	1 cut(s)	200
TaqI	TCGA	5 cut(s)	31, 117, 177, 185, 240
TfiI	GAWTC	2 cut(s)	212, 256
TscAI	CASTG	1 cut(s)	12
TseI	GCWGC	1 cut(s)	317
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	1 cut(s)	12
XmiI	GTMKAC	1 cut(s)	177
XmnI	GAANNNNTTC	1 cut(s)	333
XspI	CTAG	2 cut(s)	84, 251
Zsp2I	ATGCAT	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.