Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0009734

Physical Location & Seq

Genomic Coordinates Reverse (-)

81201762 .. 81203003

Gene Structure 1242 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG523700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAGTTCGAGATCCTCTCCTGCGATTGGAACAAGTACAACAACTGCGTCATCGTCATTGCCTCCGTCGACAAATCGATCAAGGTTTGGGACGCCAGGTCCATCGGAGCTTCGATTTGCTTCTCAACGGCCACAGCTACGCCGTCAGAAAAGCCAAATTCTCGCCGCATTGGCAAAGCTTGATGACCTACAGCTGCGGCCTTGGATCAATAACTCTGAAAACTACATTGCCGTCGCCGTCGATTACCGCCTAGTGATTCGTGACACTCCCTCCTTCAAGTCTCATAATATTCGATGCACTGAGTCGTTTATGCGAGATAATGTGGTTGGGGAGCTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SHQ1 zf-HIT

Protein Analysis

113

Amino Acids

12.6

Weight (kDa)

10.14

Isoelectric Point (pI)

75.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0009734)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318691 RchiOBHm_Chr4g0417811 RchiOBHm_Chr5g0056321
rosa_laevigata	RLG00000001224 RLG00000013183
rosa_multiflora	Rmu_sc0000982.1_g000066 Rmu_sc0004761.1_g000013 Rmu_sc0017725.1_g000002 Rmu_ssc0000259.1_g000041
rosa_roxburghii	Rroxscaffold_7G00180230
rosa_rugosa	Rorug01G0356200
rosa_samantha	Rh1AG035900 Rh1DG306000 Rh2BG076200 Rh2CG032100 Rh2CG078400 Rh2CG583600 Rh5BG380600 Rh5DG393700 Rh5DG523700 Rh7AG278300 Rh7CG297300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	68
AciI	CCGC	3 cut(s)	165, 196, 247
AclWI	GGATC	2 cut(s)	6, 212
AcoI	YGGCCR	1 cut(s)	128
AcsI	RAATTY	1 cut(s)	156
AcyI	GRCGYC	1 cut(s)	92
AfaI	GTAC	1 cut(s)	37
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	277
AhdI	GACNNNNNGTC	1 cut(s)	96
AjnI	CCWGG	1 cut(s)	94
AluBI	AGCT	5 cut(s)	109, 136, 178, 193, 334
AluI	AGCT	5 cut(s)	109, 136, 178, 193, 334
Alw26I	GTCTC	1 cut(s)	285
AlwI	GGATC	2 cut(s)	6, 212
AoxI	GGCC	2 cut(s)	128, 197
ApeKI	GCWGC	1 cut(s)	193
ApoI	RAATTY	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	98
BbvI	GCAGC	1 cut(s)	180
BccI	CCATC	1 cut(s)	109
BceAI	ACGGC	4 cut(s)	126, 143, 215, 221
BciT130I	CCWGG	1 cut(s)	96
BcoDI	GTCTC	1 cut(s)	285
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	188
BglI	GCCNNNNNGGC	1 cut(s)	170
BisI	GCNGC	3 cut(s)	165, 194, 197
BlsI	GCNGC	3 cut(s)	166, 195, 198
Bme1390I	CCNGG	1 cut(s)	96
Bme18I	GGWCC	1 cut(s)	98
BmeRI	GACNNNNNGTC	1 cut(s)	96
BmgT120I	GGNCC	1 cut(s)	98
BmrFI	CCNGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	284
BplI	GAGNNNNNCTC	1 cut(s)	33
Bsa29I	ATCGAT	1 cut(s)	76
BsaHI	GRCGYC	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	200
BsaXI	ACNNNNNCTCC	3 cut(s)	254, 284, 323
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse3DI	GCAATG	2 cut(s)	56, 225
BseBI	CCWGG	1 cut(s)	96
BseCI	ATCGAT	1 cut(s)	76
BseDI	CCNNGG	1 cut(s)	200
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMI	GCAATG	2 cut(s)	56, 225
BseMII	CTCAG	1 cut(s)	291
BseXI	GCAGC	1 cut(s)	180
BshFI	GGCC	2 cut(s)	130, 199
BshVI	ATCGAT	1 cut(s)	76
BslFI	GGGAC	1 cut(s)	103
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	285
BsmFI	GGGAC	1 cut(s)	103
BsnI	GGCC	2 cut(s)	130, 199
Bsp143I	GATC	3 cut(s)	11, 77, 204
BspACI	CCGC	3 cut(s)	165, 196, 247
BspANI	GGCC	2 cut(s)	130, 199
BspCNI	CTCAG	1 cut(s)	292
BspDI	ATCGAT	1 cut(s)	76
BspPI	GGATC	2 cut(s)	6, 212
BsrDI	GCAATG	2 cut(s)	56, 225
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	3 cut(s)	11, 77, 204
BssNI	GRCGYC	1 cut(s)	92
BssT1I	CCWWGG	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	96
BstACI	GRCGYC	1 cut(s)	92
BstDEI	CTNAG	1 cut(s)	300
BstKTI	GATC	3 cut(s)	14, 80, 207
BstMAI	GTCTC	1 cut(s)	285
BstMBI	GATC	3 cut(s)	11, 77, 204
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	94
BstSFI	CTRYAG	1 cut(s)	188
BstV1I	GCAGC	1 cut(s)	180
BstX2I	RGATCY	1 cut(s)	11
BstYI	RGATCY	1 cut(s)	11
Bsu15I	ATCGAT	1 cut(s)	76
BsuRI	GGCC	2 cut(s)	130, 199
BsuTUI	ATCGAT	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	297
Cfr13I	GGNCC	1 cut(s)	98
ClaI	ATCGAT	1 cut(s)	76
CseI	GACGC	2 cut(s)	36, 100
Csp6I	GTAC	1 cut(s)	36
CviJI	RGCY	8 cut(s)	109, 130, 136, 153, 178, 193, 199, 334
CviKI_1	RGCY	8 cut(s)	109, 130, 136, 153, 178, 193, 199, 334
CviQI	GTAC	1 cut(s)	36
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	3 cut(s)	13, 79, 206
DpnII	GATC	3 cut(s)	11, 77, 204
DriI	GACNNNNNGTC	1 cut(s)	96
EaeI	YGGCCR	1 cut(s)	128
Eam1105I	GACNNNNNGTC	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	200
FaiI	YATR	2 cut(s)	285, 311
FaqI	GGGAC	1 cut(s)	103
FblI	GTMKAC	1 cut(s)	68
Fnu4HI	GCNGC	3 cut(s)	165, 194, 197
Fsp4HI	GCNGC	3 cut(s)	165, 194, 197
FspBI	CTAG	1 cut(s)	251
GluI	GCNGC	3 cut(s)	165, 194, 197
HaeIII	GGCC	2 cut(s)	130, 199
HgaI	GACGC	2 cut(s)	36, 100
Hin1I	GRCGYC	1 cut(s)	92
HincII	GTYRAC	1 cut(s)	69
HindII	GTYRAC	1 cut(s)	69
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	2 cut(s)	256, 302
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188I	TCNGA	3 cut(s)	106, 147, 217
Hpy188III	TCNNGA	2 cut(s)	9, 260
Hpy8I	GTNNAC	1 cut(s)	69
Hpy99I	CGWCG	3 cut(s)	70, 236, 242
HpyAV	CCTTC	1 cut(s)	283
HpyCH4V	TGCA	1 cut(s)	297
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	1 cut(s)	300
Hsp92I	GRCGYC	1 cut(s)	92
Kzo9I	GATC	3 cut(s)	11, 77, 204
LmnI	GCTCC	2 cut(s)	106, 331
LpnPI	CCDG	3 cut(s)	33, 81, 108
Lsp1109I	GCAGC	1 cut(s)	180
LweI	GCATC	1 cut(s)	284
MaeI	CTAG	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	3 cut(s)	13, 79, 206
MboI	GATC	3 cut(s)	11, 77, 204
MflI	RGATCY	1 cut(s)	11
MluCI	AATT	1 cut(s)	156
MlyI	GAGTC	1 cut(s)	311
MnlI	CCTC	3 cut(s)	25, 72, 280
MspA1I	CMGCKG	1 cut(s)	193
MspR9I	CCNGG	1 cut(s)	96
MvaI	CCWGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	170
NdeII	GATC	3 cut(s)	11, 77, 204
NmuCI	GTSAC	1 cut(s)	260
PfeI	GAWTC	1 cut(s)	256
PkrI	GCNGC	3 cut(s)	166, 195, 198
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
Psp6I	CCWGG	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	94
PspPI	GGNCC	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	11
PvuII	CAGCTG	1 cut(s)	193
RsaI	GTAC	1 cut(s)	37
RsaNI	GTAC	1 cut(s)	36
SalI	GTCGAC	1 cut(s)	67
SatI	GCNGC	3 cut(s)	165, 194, 197
Sau3AI	GATC	3 cut(s)	11, 77, 204
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	1 cut(s)	96
SetI	ASST	8 cut(s)	86, 100, 111, 138, 180, 189, 195, 336
SfaNI	GCATC	1 cut(s)	284
SfcI	CTRYAG	1 cut(s)	188
SinI	GGWCC	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	1 cut(s)	156
SsiI	CCGC	3 cut(s)	165, 196, 247
SspI	AATATT	1 cut(s)	289
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	94
StyI	CCWWGG	1 cut(s)	200
TaqI	TCGA	6 cut(s)	8, 68, 76, 112, 240, 292
TasI	AATT	1 cut(s)	156
TatI	WGTACW	1 cut(s)	35
TauI	GCSGC	2 cut(s)	167, 199
TfiI	GAWTC	1 cut(s)	256
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	1 cut(s)	260
TseI	GCWGC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	260
TspGWI	ACGGA	1 cut(s)	54
TspRI	CASTG	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	98
XapI	RAATTY	1 cut(s)	156
XmiI	GTMKAC	1 cut(s)	68
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.