RchiOBHm_Chr1g0323081

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0006963
Physical Location & Seq
Forward (+)
10675042 .. 10675551
510 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55302

Sequence Viewer

Length: 456 bp
ATGAGGTCCTCTGACTTATTCCGGACTCATGTAAATGCAAGGCGAATCACAAGTTTTCAACAGCTTATTGAAGCTATGGTCACTACTGAAAGACATGGCAATGAACTTGTGAAAAGAAGATTTGATAGGCTTCAAGATAGCTATCAAGAGCATCGTCCTATGGCTAGAGAAAGTCGCCATCGACGTCATGATCCATACGATCGAAATGCTCAAGAAGGTAATCGCTCAAGGCGACAATCCCACGACCGTAGGAGGCGTGATTTTGAGGGAAATAGGGTTGGAAACCATGGAGCCAACGTTGGCCATGGGCACCACTTTCCAACGCCACCAGTCCTAGGGACTATGCATATTGCGCCAATGCGCCTCAATCAAGGGAGAATCCTCTTTATGGTGTCTATTTCTGATATGGAACGTCTGATCAATGGACCTGAATTTGCAATGTACCTACGAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.98

Weight (kDa)

11.47

Isoelectric Point (pI)

82.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 187
AccB1I GGYRCC 1 cut(s) 309
AccIII TCCGGA 1 cut(s) 21
AclI AACGTT 1 cut(s) 297
AclWI GGATC 1 cut(s) 185
AcoI YGGCCR 1 cut(s) 301
AcsI RAATTY 1 cut(s) 431
AcyI GRCGYC 1 cut(s) 184
AfaI GTAC 1 cut(s) 443
AfiI CCNNNNNNNGG 2 cut(s) 335, 388
AgsI TTSAA 3 cut(s) 59, 71, 134
AluBI AGCT 3 cut(s) 64, 74, 141
AluI AGCT 3 cut(s) 64, 74, 141
AlwI GGATC 1 cut(s) 185
Aor13HI TCCGGA 1 cut(s) 21
AoxI GGCC 1 cut(s) 301
ApoI RAATTY 1 cut(s) 431
AspA2I CCTAGG 1 cut(s) 334
AspLEI GCGC 2 cut(s) 355, 363
AspS9I GGNCC 2 cut(s) 6, 425
AvaII GGWCC 2 cut(s) 6, 425
AvrII CCTAGG 1 cut(s) 334
BaeGI GKGCMC 1 cut(s) 312
BalI TGGCCA 1 cut(s) 303
BanI GGYRCC 1 cut(s) 309
BccI CCATC 1 cut(s) 186
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BclI TGATCA 1 cut(s) 417
BfaI CTAG 2 cut(s) 165, 335
BlnI CCTAGG 1 cut(s) 334
Bme18I GGWCC 2 cut(s) 6, 425
BmgT120I GGNCC 2 cut(s) 6, 425
BmiI GGNNCC 2 cut(s) 292, 311
BmsI GCATC 1 cut(s) 160
BpuEI CTTGAG 2 cut(s) 195, 211
BsaBI GATNNNNATC 1 cut(s) 141
BsaHI GRCGYC 1 cut(s) 184
BsaJI CCNNGG 3 cut(s) 286, 304, 334
BsaWI WCCGGW 1 cut(s) 21
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 2 cut(s) 335, 388
Bse1I ACTGG 1 cut(s) 329
Bse3DI GCAATG 2 cut(s) 106, 444
Bse8I GATNNNNATC 1 cut(s) 141
BseAI TCCGGA 1 cut(s) 21
BseDI CCNNGG 3 cut(s) 286, 304, 334
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 2 cut(s) 335, 388
BseMI GCAATG 2 cut(s) 106, 444
BseNI ACTGG 1 cut(s) 329
BseSI GKGCMC 1 cut(s) 312
Bsh1285I CGRYCG 2 cut(s) 202, 247
BshFI GGCC 1 cut(s) 303
BshNI GGYRCC 1 cut(s) 309
BsiEI CGRYCG 2 cut(s) 202, 247
BsiSI CCGG 1 cut(s) 22
BslFI GGGAC 1 cut(s) 352
BslI CCNNNNNNNGG 2 cut(s) 335, 388
BsmFI GGGAC 1 cut(s) 352
BsnI GGCC 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 312
Bsp13I TCCGGA 1 cut(s) 21
Bsp143I GATC 3 cut(s) 190, 199, 417
Bsp19I CCATGG 2 cut(s) 286, 304
BspANI GGCC 1 cut(s) 303
BspEI TCCGGA 1 cut(s) 21
BspHI TCATGA 1 cut(s) 187
BspLI GGNNCC 2 cut(s) 292, 311
BspPI GGATC 1 cut(s) 185
BspT107I GGYRCC 1 cut(s) 309
BsrDI GCAATG 2 cut(s) 106, 444
BsrI ACTGG 1 cut(s) 329
BssECI CCNNGG 3 cut(s) 286, 304, 334
BssMI GATC 3 cut(s) 190, 199, 417
BssNI GRCGYC 1 cut(s) 184
BssT1I CCWWGG 3 cut(s) 286, 304, 334
Bst4CI ACNGT 1 cut(s) 248
BstACI GRCGYC 1 cut(s) 184
BstDSI CCRYGG 2 cut(s) 286, 304
BstHHI GCGC 2 cut(s) 355, 363
BstKTI GATC 3 cut(s) 193, 202, 420
BstMBI GATC 3 cut(s) 190, 199, 417
BstMCI CGRYCG 2 cut(s) 202, 247
BstMWI GCNNNNNNNGC 1 cut(s) 352
BstSLI GKGCMC 1 cut(s) 312
BsuRI GGCC 1 cut(s) 303
BtgI CCRYGG 2 cut(s) 286, 304
CciI TCATGA 1 cut(s) 187
CfoI GCGC 2 cut(s) 355, 363
Cfr13I GGNCC 2 cut(s) 6, 425
Csp6I GTAC 1 cut(s) 442
CviAII CATG 5 cut(s) 29, 95, 188, 287, 305
CviJI RGCY 7 cut(s) 64, 74, 130, 141, 164, 293, 303
CviKI_1 RGCY 7 cut(s) 64, 74, 130, 141, 164, 293, 303
CviQI GTAC 1 cut(s) 442
DpnI GATC 3 cut(s) 192, 201, 419
DpnII GATC 3 cut(s) 190, 199, 417
EaeI YGGCCR 1 cut(s) 301
Eco130I CCWWGG 3 cut(s) 286, 304, 334
Eco47I GGWCC 2 cut(s) 6, 425
EcoO109I RGGNCCY 1 cut(s) 6
EcoT14I CCWWGG 3 cut(s) 286, 304, 334
EcoT22I ATGCAT 1 cut(s) 348
ErhI CCWWGG 3 cut(s) 286, 304, 334
FaeI CATG 5 cut(s) 32, 98, 191, 290, 308
FaqI GGGAC 1 cut(s) 352
FatI CATG 5 cut(s) 28, 94, 187, 286, 304
FbaI TGATCA 1 cut(s) 417
FspBI CTAG 2 cut(s) 165, 335
GlaI GCGC 2 cut(s) 354, 362
HaeIII GGCC 1 cut(s) 303
HapII CCGG 1 cut(s) 22
HhaI GCGC 2 cut(s) 355, 363
Hin1I GRCGYC 1 cut(s) 184
Hin1II CATG 5 cut(s) 32, 98, 191, 290, 308
Hin6I GCGC 2 cut(s) 353, 361
HinP1I GCGC 2 cut(s) 353, 361
HinfI GANTC 3 cut(s) 25, 45, 378
HpaII CCGG 1 cut(s) 22
Hpy188I TCNGA 3 cut(s) 13, 403, 417
Hpy188III TCNNGA 5 cut(s) 22, 134, 146, 188, 212
Hpy99I CGWCG 1 cut(s) 186
HpyAV CCTTC 2 cut(s) 209, 444
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4IV ACGT 3 cut(s) 184, 297, 412
HpyCH4V TGCA 3 cut(s) 38, 346, 437
HpyF10VI GCNNNNNNNGC 1 cut(s) 352
HpySE526I ACGT 3 cut(s) 184, 297, 412
Hsp92I GRCGYC 1 cut(s) 184
Hsp92II CATG 5 cut(s) 32, 98, 191, 290, 308
HspAI GCGC 2 cut(s) 353, 361
Kpn2I TCCGGA 1 cut(s) 21
Ksp22I TGATCA 1 cut(s) 417
Kzo9I GATC 3 cut(s) 190, 199, 417
LmnI GCTCC 1 cut(s) 290
LpnPI CCDG 3 cut(s) 35, 342, 441
LweI GCATC 1 cut(s) 160
MaeI CTAG 2 cut(s) 165, 335
MaeII ACGT 3 cut(s) 184, 297, 412
MaeIII GTNAC 1 cut(s) 79
MalI GATC 3 cut(s) 192, 201, 419
MboI GATC 3 cut(s) 190, 199, 417
MboII GAAGA 1 cut(s) 129
MhlI GDGCHC 1 cut(s) 312
MlsI TGGCCA 1 cut(s) 303
MluCI AATT 1 cut(s) 431
MluNI TGGCCA 1 cut(s) 303
MlyI GAGTC 1 cut(s) 19
MmeI TCCRAC 2 cut(s) 259, 344
MnlI CCTC 5 cut(s) 19, 246, 259, 374, 392
Mox20I TGGCCA 1 cut(s) 303
Mph1103I ATGCAT 1 cut(s) 348
MroI TCCGGA 1 cut(s) 21
MscI TGGCCA 1 cut(s) 303
MslI CAYNNNNRTG 2 cut(s) 33, 99
Msp20I TGGCCA 1 cut(s) 303
MspI CCGG 1 cut(s) 22
MwoI GCNNNNNNNGC 1 cut(s) 352
NcoI CCATGG 2 cut(s) 286, 304
NdeII GATC 3 cut(s) 190, 199, 417
NlaIII CATG 5 cut(s) 32, 98, 191, 290, 308
NlaIV GGNNCC 2 cut(s) 292, 311
NmuCI GTSAC 1 cut(s) 79
NsiI ATGCAT 1 cut(s) 348
PagI TCATGA 1 cut(s) 187
PcsI WCGNNNNNNNCGW 2 cut(s) 181, 229
PfeI GAWTC 2 cut(s) 45, 378
Ple19I CGATCG 1 cut(s) 202
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
PpuMI RGGWCCY 1 cut(s) 6
Psp1406I AACGTT 1 cut(s) 297
Psp5II RGGWCCY 1 cut(s) 6
PspN4I GGNNCC 2 cut(s) 292, 311
PspPI GGNCC 2 cut(s) 6, 425
PspPPI RGGWCCY 1 cut(s) 6
PvuI CGATCG 1 cut(s) 202
RsaI GTAC 1 cut(s) 443
RsaNI GTAC 1 cut(s) 442
RseI CAYNNNNRTG 2 cut(s) 33, 99
Sau3AI GATC 3 cut(s) 190, 199, 417
Sau96I GGNCC 2 cut(s) 6, 425
SchI GAGTC 1 cut(s) 19
SduI GDGCHC 1 cut(s) 312
SfaNI GCATC 1 cut(s) 160
SinI GGWCC 2 cut(s) 6, 425
SmiMI CAYNNNNRTG 2 cut(s) 33, 99
SmlI CTYRAG 2 cut(s) 210, 226
SmoI CTYRAG 2 cut(s) 210, 226
Sse9I AATT 1 cut(s) 431
SspMI CTAG 2 cut(s) 165, 335
StyI CCWWGG 3 cut(s) 286, 304, 334
TaaI ACNGT 1 cut(s) 248
TaiI ACGT 3 cut(s) 187, 300, 415
TaqI TCGA 2 cut(s) 181, 202
TasI AATT 1 cut(s) 431
TfiI GAWTC 2 cut(s) 45, 378
TseFI GTSAC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 117
VpaK11BI GGWCC 2 cut(s) 6, 425
XapI RAATTY 1 cut(s) 431
XmaJI CCTAGG 1 cut(s) 334
XspI CTAG 2 cut(s) 165, 335
ZraI GACGTC 1 cut(s) 185
Zsp2I ATGCAT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.