Rmu_sc0015156.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015156.1
OG0006963
Physical Location & Seq
Forward (+)
15061 .. 15300
240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015156.1_g000005.1.cds

Sequence Viewer

Length: 240 bp
atgagtaatctgaacaaattagactttgctccattgggaacaactggctctgaatatcacatgtgggttcgtgatatccgccagcatctcaaggcctatgaaatcttggatacgattctcgagcctagccaggacgtgttaactgttgagcaagctcaagctttggaagaaaatagagcagccttagaggcaaataaggcgaaagccatcatcctaatgactcgtcatatggatgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

79

Amino Acids

9.02

Weight (kDa)

5.02

Isoelectric Point (pI)

49.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 79
AflIII ACRYGT 2 cut(s) 60, 135
AjiI CACGTC 1 cut(s) 136
AjnI CCWGG 1 cut(s) 129
AluBI AGCT 2 cut(s) 155, 161
AluI AGCT 2 cut(s) 155, 161
Ama87I CYCGRG 1 cut(s) 119
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 179
AvaI CYCGRG 1 cut(s) 119
BbvI GCAGC 1 cut(s) 191
BccI CCATC 1 cut(s) 215
BciT130I CCWGG 1 cut(s) 131
BciVI GTATCC 1 cut(s) 103
BfaI CTAG 1 cut(s) 126
BfuI GTATCC 1 cut(s) 103
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme1390I CCNGG 1 cut(s) 131
BmeT110I CYCGRG 1 cut(s) 119
BmgBI CACGTC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 94
BpuEI CTTGAG 2 cut(s) 74, 141
Bse1I ACTGG 1 cut(s) 49
BseBI CCWGG 1 cut(s) 131
BseGI GGATG 2 cut(s) 210, 238
BseNI ACTGG 1 cut(s) 49
BseXI GCAGC 1 cut(s) 191
BshFI GGCC 1 cut(s) 95
BsiHKCI CYCGRG 1 cut(s) 119
BsnI GGCC 1 cut(s) 95
BsoBI CYCGRG 1 cut(s) 119
BspACI CCGC 1 cut(s) 79
BspANI GGCC 1 cut(s) 95
BsrI ACTGG 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 145
BstC8I GCNNGC 2 cut(s) 83, 153
BstDEI CTNAG 1 cut(s) 184
BstF5I GGATG 2 cut(s) 210, 238
BstMWI GCNNNNNNNGC 2 cut(s) 188, 197
BstNI CCWGG 1 cut(s) 131
BstNSI RCATGY 1 cut(s) 64
BstSCI CCNGG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 191
BsuI GTATCC 1 cut(s) 103
BsuRI GGCC 1 cut(s) 95
BtrI CACGTC 1 cut(s) 136
BtsCI GGATG 2 cut(s) 210, 238
Cac8I GCNNGC 2 cut(s) 83, 153
CviAII CATG 1 cut(s) 61
CviJI RGCY 8 cut(s) 48, 95, 124, 129, 155, 161, 182, 206
CviKI_1 RGCY 8 cut(s) 48, 95, 124, 129, 155, 161, 182, 206
DdeI CTNAG 1 cut(s) 184
EciI GGCGGA 1 cut(s) 68
Eco147I AGGCCT 1 cut(s) 95
Eco32I GATATC 1 cut(s) 76
Eco88I CYCGRG 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 129
EcoRV GATATC 1 cut(s) 76
FaeI CATG 1 cut(s) 64
FaiI YATR 4 cut(s) 62, 99, 228, 230
FatI CATG 1 cut(s) 60
FauNDI CATATG 1 cut(s) 228
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 1 cut(s) 126
GluI GCNGC 1 cut(s) 180
HaeIII GGCC 1 cut(s) 95
Hin1II CATG 1 cut(s) 64
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 2 cut(s) 115, 220
HpaI GTTAAC 1 cut(s) 141
Hpy166II GTNNAC 1 cut(s) 141
Hpy188I TCNGA 2 cut(s) 12, 52
Hpy188III TCNNGA 2 cut(s) 71, 119
Hpy8I GTNNAC 1 cut(s) 141
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 135
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 197
HpyF3I CTNAG 1 cut(s) 184
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 1 cut(s) 64
KspAI GTTAAC 1 cut(s) 141
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 4 cut(s) 30, 95, 116, 143
Lsp1109I GCAGC 1 cut(s) 191
LweI GCATC 1 cut(s) 94
MaeI CTAG 1 cut(s) 126
MaeII ACGT 1 cut(s) 135
MboII GAAGA 1 cut(s) 179
MluCI AATT 1 cut(s) 17
MlyI GAGTC 1 cut(s) 214
MnlI CCTC 1 cut(s) 181
MseI TTAA 1 cut(s) 140
MslI CAYNNNNRTG 2 cut(s) 215, 231
MspR9I CCNGG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 131
MwoI GCNNNNNNNGC 2 cut(s) 188, 197
NdeI CATATG 1 cut(s) 228
NlaIII CATG 1 cut(s) 64
NspI RCATGY 1 cut(s) 64
PaeR7I CTCGAG 1 cut(s) 119
PceI AGGCCT 1 cut(s) 95
PciI ACATGT 1 cut(s) 60
PfeI GAWTC 1 cut(s) 115
PkrI GCNGC 1 cut(s) 181
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
PscI ACATGT 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
RseI CAYNNNNRTG 2 cut(s) 215, 231
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 1 cut(s) 180
SchI GAGTC 1 cut(s) 214
ScrFI CCNGG 1 cut(s) 131
SetI ASST 3 cut(s) 138, 157, 163
SfaNI GCATC 1 cut(s) 94
Sfr274I CTCGAG 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 119
SmiMI CAYNNNNRTG 2 cut(s) 215, 231
SmlI CTYRAG 3 cut(s) 89, 119, 156
SmoI CTYRAG 3 cut(s) 89, 119, 156
Sse9I AATT 1 cut(s) 17
SseBI AGGCCT 1 cut(s) 95
SsiI CCGC 1 cut(s) 79
SspMI CTAG 1 cut(s) 126
StuI AGGCCT 1 cut(s) 95
StyD4I CCNGG 1 cut(s) 129
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 1 cut(s) 138
TaqI TCGA 1 cut(s) 120
TasI AATT 1 cut(s) 17
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TseI GCWGC 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 114
XceI RCATGY 1 cut(s) 64
XhoI CTCGAG 1 cut(s) 119
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.