Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0006963

Physical Location & Seq

Genomic Coordinates Reverse (-)

37716175 .. 37716867

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G018910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGTCAAACTCGAACATACTCGATTTTGTTCCATTGGATTATGCAGGCAAAAGATACATATTGTGGGCTCAGGACATTGAGCTCCATCTTATTTCCCGTGATCTATTGCACACAATCCAAGAGCTTTGTTCTGAAGGAACTGCTCCAGACCCTCAAACTGAGATTGACAATTCCAGGGCACTTGCCCTAATGATGCGTTATATGGATAGAGACCTCCAGTTTGAGTTCATGAATGAGGATAGCGCCATAAAGCTTTGGCAAGCGCTTCGTGAACGTCTTGGCAATGTTCGTGACTCCATCCTTCCGAATTTAGAAGCAGAATGGAATCATCTTCGCTTCTTTGACTTTGATACAGTCATACAATTTTATTTGGAAGCTCTCCGCATCACAGGAATGATGCGCTTCTATGGCAAGACGATCACAGAAGAACAATATGATCTAAATGCTCAGGAAGGTAGTTGCCAAAGGCGACAATCACGCCACCGTAGGAGCTGTGATTTTGAGGGACTAAGGGTTGGAAACCATAGAGCCAACGTTGGTCATGGTCATAATCTTCCAACGCCTCAGGTCCTAGGGACCATGCACATTGCGCCAATGCGCCTCAATCAAGGGAGAGTCCTCTTCATGGTATCTATTTCTGATATGGAACGTCTGATCAATGGGCCTGAGTTTGCAATGTACCTAAGAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

230

Amino Acids

26.94

Weight (kDa)

5.91

Isoelectric Point (pI)

64.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006963)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323081 RchiOBHm_Chr2g0168921 RchiOBHm_Chr3g0488021 RchiOBHm_Chr7g0240151
rosa_multiflora	Rmu_sc0000394.1_g000060 Rmu_sc0006867.1_g000028 Rmu_sc0015156.1_g000005
rosa_roxburghii	Rroxscaffold_2G00110370 Rroxscaffold_4G00296000 Rroxscaffold_4G00296010 Rroxscaffold_5G00378770
rosa_rugosa	Rorug06G0510400
rosa_samantha	Rh2BG204600 Rh2BG204700 Rh2BG440000 Rh2BG539600 Rh2DG026100 Rh2DG291000 Rh4CG266000 Rh5BG195600 Rh6AG373800 Rh6DG133200 Rh7CG424800 Rh7CG511100
rosa_wichuraiana	Rw4G020380 Rw6G018910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	382
AclI	AACGTT	1 cut(s)	534
AcsI	RAATTY	1 cut(s)	307
AcuI	CTGAAG	1 cut(s)	153
AfaI	GTAC	1 cut(s)	680
AfeI	AGCGCT	1 cut(s)	264
AfiI	CCNNNNNNNGG	1 cut(s)	625
AjnI	CCWGG	1 cut(s)	173
AluBI	AGCT	5 cut(s)	82, 124, 253, 377, 492
AluI	AGCT	5 cut(s)	82, 124, 253, 377, 492
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	1 cut(s)	204
Aor51HI	AGCGCT	1 cut(s)	264
AoxI	GGCC	1 cut(s)	662
ApoI	RAATTY	1 cut(s)	307
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
AspA2I	CCTAGG	1 cut(s)	571
AspLEI	GCGC	5 cut(s)	245, 265, 402, 592, 600
AspS9I	GGNCC	3 cut(s)	568, 576, 662
AvaII	GGWCC	2 cut(s)	568, 576
AvrII	CCTAGG	1 cut(s)	571
AxyI	CCTNAGG	1 cut(s)	564
BaeGI	GKGCMC	1 cut(s)	181
BanII	GRGCYC	2 cut(s)	70, 84
Bbv12I	GWGCWC	1 cut(s)	84
BccI	CCATC	2 cut(s)	93, 305
BcgI	CGANNNNNNTGC	2 cut(s)	248, 282
BciT130I	CCWGG	1 cut(s)	175
BclI	TGATCA	1 cut(s)	654
BcoDI	GTCTC	1 cut(s)	204
BfaI	CTAG	1 cut(s)	572
BfoI	RGCGCY	2 cut(s)	246, 266
BlnI	CCTAGG	1 cut(s)	571
Bme1390I	CCNGG	1 cut(s)	175
Bme18I	GGWCC	2 cut(s)	568, 576
BmgT120I	GGNCC	3 cut(s)	568, 576, 662
BmiI	GGNNCC	1 cut(s)	577
BmrFI	CCNGG	1 cut(s)	175
BmsI	GCATC	3 cut(s)	183, 387, 393
BpmI	CTGGAG	2 cut(s)	129, 200
Bpu10I	CCTNAGC	2 cut(s)	69, 447
BsaI	GGTCTC	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	174, 571
Bsc4I	CCNNNNNNNGG	1 cut(s)	625
Bse1I	ACTGG	1 cut(s)	217
Bse21I	CCTNAGG	1 cut(s)	564
Bse3DI	GCAATG	3 cut(s)	289, 585, 681
BseBI	CCWGG	1 cut(s)	175
BseDI	CCNNGG	2 cut(s)	174, 571
BseGI	GGATG	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	625
BseMI	GCAATG	3 cut(s)	289, 585, 681
BseMII	CTCAG	5 cut(s)	83, 150, 461, 578, 657
BseNI	ACTGG	1 cut(s)	217
BseSI	GKGCMC	1 cut(s)	181
BshFI	GGCC	1 cut(s)	664
BsiHKAI	GWGCWC	1 cut(s)	84
BslFI	GGGAC	2 cut(s)	519, 589
BslI	CCNNNNNNNGG	1 cut(s)	625
BsmAI	GTCTC	1 cut(s)	204
BsmFI	GGGAC	2 cut(s)	519, 589
BsnI	GGCC	1 cut(s)	664
Bso31I	GGTCTC	1 cut(s)	204
Bsp1286I	GDGCHC	3 cut(s)	70, 84, 181
Bsp143I	GATC	4 cut(s)	100, 417, 436, 654
BspACI	CCGC	1 cut(s)	382
BspANI	GGCC	1 cut(s)	664
BspCNI	CTCAG	5 cut(s)	82, 151, 460, 577, 658
BspHI	TCATGA	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	577
BspTNI	GGTCTC	1 cut(s)	204
BsrDI	GCAATG	3 cut(s)	289, 585, 681
BsrI	ACTGG	1 cut(s)	217
BssECI	CCNNGG	2 cut(s)	174, 571
BssMI	GATC	4 cut(s)	100, 417, 436, 654
BssT1I	CCWWGG	1 cut(s)	571
Bst2UI	CCWGG	1 cut(s)	175
Bst4CI	ACNGT	2 cut(s)	355, 485
Bst6I	CTCTTC	1 cut(s)	626
BstC8I	GCNNGC	2 cut(s)	46, 261
BstDEI	CTNAG	7 cut(s)	69, 159, 447, 509, 564, 666, 683
BstF5I	GGATG	1 cut(s)	297
BstH2I	RGCGCY	2 cut(s)	246, 266
BstHHI	GCGC	5 cut(s)	245, 265, 402, 592, 600
BstKTI	GATC	4 cut(s)	103, 420, 439, 657
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	4 cut(s)	100, 417, 436, 654
BstMWI	GCNNNNNNNGC	2 cut(s)	408, 589
BstNI	CCWGG	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	173
BstSLI	GKGCMC	1 cut(s)	181
Bsu36I	CCTNAGG	1 cut(s)	564
BsuRI	GGCC	1 cut(s)	664
BtsCI	GGATG	1 cut(s)	297
Cac8I	GCNNGC	2 cut(s)	46, 261
CciI	TCATGA	1 cut(s)	228
CfoI	GCGC	5 cut(s)	245, 265, 402, 592, 600
Cfr13I	GGNCC	3 cut(s)	568, 576, 662
Csp6I	GTAC	1 cut(s)	679
CviAII	CATG	4 cut(s)	229, 542, 580, 625
CviJI	RGCY	8 cut(s)	68, 82, 124, 253, 377, 492, 530, 664
CviKI_1	RGCY	8 cut(s)	68, 82, 124, 253, 377, 492, 530, 664
CviQI	GTAC	1 cut(s)	679
DdeI	CTNAG	7 cut(s)	69, 159, 447, 509, 564, 666, 683
DpnI	GATC	4 cut(s)	102, 419, 438, 656
DpnII	GATC	4 cut(s)	100, 417, 436, 654
Eam1104I	CTCTTC	1 cut(s)	626
EarI	CTCTTC	1 cut(s)	626
Ecl136II	GAGCTC	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	571
Eco24I	GRGCYC	2 cut(s)	70, 84
Eco31I	GGTCTC	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	568, 576
Eco47III	AGCGCT	1 cut(s)	264
Eco53kI	GAGCTC	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	153
Eco81I	CCTNAGG	1 cut(s)	564
EcoICRI	GAGCTC	1 cut(s)	82
EcoO109I	RGGNCCY	1 cut(s)	568
EcoRII	CCWGG	1 cut(s)	173
EcoT14I	CCWWGG	1 cut(s)	571
EcoT38I	GRGCYC	2 cut(s)	70, 84
ErhI	CCWWGG	1 cut(s)	571
FaeI	CATG	4 cut(s)	232, 545, 583, 628
FaqI	GGGAC	2 cut(s)	519, 589
FatI	CATG	4 cut(s)	228, 541, 579, 624
FbaI	TGATCA	1 cut(s)	654
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	2 cut(s)	70, 84
FspBI	CTAG	1 cut(s)	572
GlaI	GCGC	5 cut(s)	244, 264, 401, 591, 599
GsuI	CTGGAG	2 cut(s)	129, 200
HaeII	RGCGCY	2 cut(s)	246, 266
HaeIII	GGCC	1 cut(s)	664
HhaI	GCGC	5 cut(s)	245, 265, 402, 592, 600
Hin1II	CATG	4 cut(s)	232, 545, 583, 628
Hin6I	GCGC	5 cut(s)	243, 263, 400, 590, 598
HinP1I	GCGC	5 cut(s)	243, 263, 400, 590, 598
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	3 cut(s)	293, 325, 615
Hpy166II	GTNNAC	1 cut(s)	272
Hpy188I	TCNGA	4 cut(s)	133, 306, 640, 654
Hpy188III	TCNNGA	6 cut(s)	71, 146, 229, 269, 290, 449
Hpy8I	GTNNAC	1 cut(s)	272
HpyAV	CCTTC	4 cut(s)	128, 311, 446, 681
HpyCH4III	ACNGT	2 cut(s)	355, 485
HpyCH4IV	ACGT	3 cut(s)	274, 534, 649
HpyCH4V	TGCA	4 cut(s)	44, 109, 583, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	408, 589
HpyF3I	CTNAG	7 cut(s)	69, 159, 447, 509, 564, 666, 683
HpySE526I	ACGT	3 cut(s)	274, 534, 649
Hsp92II	CATG	4 cut(s)	232, 545, 583, 628
HspAI	GCGC	5 cut(s)	243, 263, 400, 590, 598
Ksp22I	TGATCA	1 cut(s)	654
Kzo9I	GATC	4 cut(s)	100, 417, 436, 654
LmnI	GCTCC	3 cut(s)	87, 148, 489
LweI	GCATC	3 cut(s)	183, 387, 393
MaeI	CTAG	1 cut(s)	572
MaeII	ACGT	3 cut(s)	274, 534, 649
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	4 cut(s)	102, 419, 438, 656
MboI	GATC	4 cut(s)	100, 417, 436, 654
MboII	GAAGA	4 cut(s)	323, 437, 545, 613
MhlI	GDGCHC	3 cut(s)	70, 84, 181
MluCI	AATT	3 cut(s)	169, 307, 362
MlyI	GAGTC	2 cut(s)	287, 624
MmeI	TCCRAC	2 cut(s)	496, 581
MnlI	CCTC	7 cut(s)	162, 224, 229, 496, 573, 611, 629
MslI	CAYNNNNRTG	1 cut(s)	392
MspR9I	CCNGG	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	175
MwoI	GCNNNNNNNGC	2 cut(s)	408, 589
NdeII	GATC	4 cut(s)	100, 417, 436, 654
NlaIII	CATG	4 cut(s)	232, 545, 583, 628
NlaIV	GGNNCC	1 cut(s)	577
NmuCI	GTSAC	1 cut(s)	290
PagI	TCATGA	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	325
PleI	GAGTC	2 cut(s)	287, 623
PpsI	GAGTC	2 cut(s)	287, 623
PpuMI	RGGWCCY	1 cut(s)	568
Psp124BI	GAGCTC	1 cut(s)	84
Psp1406I	AACGTT	1 cut(s)	534
Psp5II	RGGWCCY	1 cut(s)	568
Psp6I	CCWGG	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	173
PspN4I	GGNNCC	1 cut(s)	577
PspPI	GGNCC	3 cut(s)	568, 576, 662
PspPPI	RGGWCCY	1 cut(s)	568
RsaI	GTAC	1 cut(s)	680
RsaNI	GTAC	1 cut(s)	679
RseI	CAYNNNNRTG	1 cut(s)	392
SacI	GAGCTC	1 cut(s)	84
Sau3AI	GATC	4 cut(s)	100, 417, 436, 654
Sau96I	GGNCC	3 cut(s)	568, 576, 662
SchI	GAGTC	2 cut(s)	287, 624
ScrFI	CCNGG	1 cut(s)	175
SduI	GDGCHC	3 cut(s)	70, 84, 181
SfaNI	GCATC	3 cut(s)	183, 387, 393
SinI	GGWCC	2 cut(s)	568, 576
SmiMI	CAYNNNNRTG	1 cut(s)	392
Sse9I	AATT	3 cut(s)	169, 307, 362
SsiI	CCGC	1 cut(s)	382
SspMI	CTAG	1 cut(s)	572
SstI	GAGCTC	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	173
StyI	CCWWGG	1 cut(s)	571
TaaI	ACNGT	2 cut(s)	355, 485
TaiI	ACGT	3 cut(s)	277, 537, 652
TaqI	TCGA	2 cut(s)	11, 21
TasI	AATT	3 cut(s)	169, 307, 362
TfiI	GAWTC	1 cut(s)	325
TseFI	GTSAC	1 cut(s)	290
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	3 cut(s)	217, 245, 613
VpaK11BI	GGWCC	2 cut(s)	568, 576
XapI	RAATTY	1 cut(s)	307
XmaJI	CCTAGG	1 cut(s)	571
XspI	CTAG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.