Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006963

Physical Location & Seq

Genomic Coordinates Forward (+)

18949431 .. 18950000

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG204700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGCAATTTTATTCGGAAGCTCTCAGCATCAGAGCAATGATGCGTCTCTGTGGAAAAACAATCACAGAAGACCAATTGATTGAGAAAACCCTCAATACCTTCCCCGTCTATGCTATGAGGTCCTCTGACTTATTCCGGACTCATGTAAATGCAAGACGGATCACAAGTTTCCAACAACTTATTGAAGCTATGGCCACTGCTGAAAGACATGGCAATGAACTTGTGCAAAGAAGATTTGATAGGCTTCAAGATAGCTATCAAGAGCATCGTCCTATGGCTAGAGAAAGTCGCCATCGACGTCATGATCCATACGATAGAAATGCTCAAGAAGGTAATCGCTCAAGGCGACAATCCCACGACCGTAGGAGGCGTGATTTTGAGGGAAATAGGGTTGGAAACCATGGAGCCAACGTTGGCCATGGGCACCACTTTCCAACGCCACCAGTCCTAGGGACTATGCATATTGCGCCAATGCGCCTCAATCAAGGGAGAATCCTCTTTATGGTGTCTATTTCTGATATGGAACGTCTGATCAATGGACCTGAATTTGCAATGTACCTACAAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

189

Amino Acids

22.29

Weight (kDa)

10.67

Isoelectric Point (pI)

72.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006963)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323081 RchiOBHm_Chr2g0168921 RchiOBHm_Chr3g0488021 RchiOBHm_Chr7g0240151
rosa_multiflora	Rmu_sc0000394.1_g000060 Rmu_sc0006867.1_g000028 Rmu_sc0015156.1_g000005
rosa_roxburghii	Rroxscaffold_2G00110370 Rroxscaffold_4G00296000 Rroxscaffold_4G00296010 Rroxscaffold_5G00378770
rosa_rugosa	Rorug06G0510400
rosa_samantha	Rh2BG204600 Rh2BG204700 Rh2BG440000 Rh2BG539600 Rh2DG026100 Rh2DG291000 Rh4CG266000 Rh5BG195600 Rh6AG373800 Rh6DG133200 Rh7CG424800 Rh7CG511100
rosa_wichuraiana	Rw4G020380 Rw6G018910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	301
AccB1I	GGYRCC	1 cut(s)	423
AccIII	TCCGGA	1 cut(s)	135
AclI	AACGTT	1 cut(s)	411
AclWI	GGATC	2 cut(s)	167, 299
AcoI	YGGCCR	2 cut(s)	192, 415
AcsI	RAATTY	1 cut(s)	545
AcyI	GRCGYC	1 cut(s)	298
AfaI	GTAC	1 cut(s)	557
AfiI	CCNNNNNNNGG	2 cut(s)	449, 502
AgsI	TTSAA	2 cut(s)	185, 248
AluBI	AGCT	3 cut(s)	20, 188, 255
AluI	AGCT	3 cut(s)	20, 188, 255
Alw26I	GTCTC	1 cut(s)	50
AlwI	GGATC	2 cut(s)	167, 299
Aor13HI	TCCGGA	1 cut(s)	135
AoxI	GGCC	2 cut(s)	192, 415
ApoI	RAATTY	1 cut(s)	545
AspA2I	CCTAGG	1 cut(s)	448
AspLEI	GCGC	2 cut(s)	469, 477
AspS9I	GGNCC	2 cut(s)	120, 539
AvaII	GGWCC	2 cut(s)	120, 539
AvrII	CCTAGG	1 cut(s)	448
BaeGI	GKGCMC	1 cut(s)	426
BalI	TGGCCA	2 cut(s)	194, 417
BanI	GGYRCC	1 cut(s)	423
BbsI	GAAGAC	1 cut(s)	75
BccI	CCATC	1 cut(s)	300
BcgI	CGANNNNNNTGC	2 cut(s)	302, 336
BclI	TGATCA	1 cut(s)	531
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	2 cut(s)	279, 449
BlnI	CCTAGG	1 cut(s)	448
Bme18I	GGWCC	2 cut(s)	120, 539
BmgT120I	GGNCC	2 cut(s)	120, 539
BmiI	GGNNCC	2 cut(s)	406, 425
BmsI	GCATC	3 cut(s)	30, 36, 274
BpiI	GAAGAC	1 cut(s)	75
BpuEI	CTTGAG	2 cut(s)	309, 325
BsaBI	GATNNNNATC	1 cut(s)	255
BsaHI	GRCGYC	1 cut(s)	298
BsaJI	CCNNGG	3 cut(s)	400, 418, 448
BsaWI	WCCGGW	1 cut(s)	135
BsaXI	ACNNNNNCTCC	2 cut(s)	396, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	449, 502
Bse1I	ACTGG	1 cut(s)	443
Bse3DI	GCAATG	3 cut(s)	42, 220, 558
Bse8I	GATNNNNATC	1 cut(s)	255
BseAI	TCCGGA	1 cut(s)	135
BseDI	CCNNGG	3 cut(s)	400, 418, 448
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	2 cut(s)	449, 502
BseMI	GCAATG	3 cut(s)	42, 220, 558
BseMII	CTCAG	1 cut(s)	37
BseNI	ACTGG	1 cut(s)	443
BseSI	GKGCMC	1 cut(s)	426
Bsh1285I	CGRYCG	1 cut(s)	361
BshFI	GGCC	2 cut(s)	194, 417
BshNI	GGYRCC	1 cut(s)	423
BsiEI	CGRYCG	1 cut(s)	361
BsiSI	CCGG	1 cut(s)	136
BslFI	GGGAC	1 cut(s)	466
BslI	CCNNNNNNNGG	2 cut(s)	449, 502
BsmAI	GTCTC	1 cut(s)	50
BsmBI	CGTCTC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	466
BsnI	GGCC	2 cut(s)	194, 417
Bsp1286I	GDGCHC	1 cut(s)	426
Bsp13I	TCCGGA	1 cut(s)	135
Bsp143I	GATC	3 cut(s)	159, 304, 531
Bsp19I	CCATGG	2 cut(s)	400, 418
BspANI	GGCC	2 cut(s)	194, 417
BspCNI	CTCAG	1 cut(s)	36
BspEI	TCCGGA	1 cut(s)	135
BspHI	TCATGA	1 cut(s)	301
BspLI	GGNNCC	2 cut(s)	406, 425
BspPI	GGATC	2 cut(s)	167, 299
BspT107I	GGYRCC	1 cut(s)	423
BsrDI	GCAATG	3 cut(s)	42, 220, 558
BsrI	ACTGG	1 cut(s)	443
BssECI	CCNNGG	3 cut(s)	400, 418, 448
BssMI	GATC	3 cut(s)	159, 304, 531
BssNI	GRCGYC	1 cut(s)	298
BssT1I	CCWWGG	3 cut(s)	400, 418, 448
Bst4CI	ACNGT	1 cut(s)	362
BstACI	GRCGYC	1 cut(s)	298
BstDEI	CTNAG	1 cut(s)	23
BstDSI	CCRYGG	2 cut(s)	400, 418
BstHHI	GCGC	2 cut(s)	469, 477
BstKTI	GATC	3 cut(s)	162, 307, 534
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	3 cut(s)	159, 304, 531
BstMCI	CGRYCG	1 cut(s)	361
BstMWI	GCNNNNNNNGC	1 cut(s)	466
BstSLI	GKGCMC	1 cut(s)	426
BstV2I	GAAGAC	1 cut(s)	75
BsuRI	GGCC	2 cut(s)	194, 417
BtgI	CCRYGG	2 cut(s)	400, 418
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	1 cut(s)	195
CciI	TCATGA	1 cut(s)	301
CfoI	GCGC	2 cut(s)	469, 477
Cfr13I	GGNCC	2 cut(s)	120, 539
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	556
CviAII	CATG	5 cut(s)	143, 209, 302, 401, 419
CviJI	RGCY	8 cut(s)	20, 188, 194, 244, 255, 278, 407, 417
CviKI_1	RGCY	8 cut(s)	20, 188, 194, 244, 255, 278, 407, 417
CviQI	GTAC	1 cut(s)	556
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	3 cut(s)	161, 306, 533
DpnII	GATC	3 cut(s)	159, 304, 531
EaeI	YGGCCR	2 cut(s)	192, 415
Eco130I	CCWWGG	3 cut(s)	400, 418, 448
Eco47I	GGWCC	2 cut(s)	120, 539
EcoO109I	RGGNCCY	1 cut(s)	120
EcoT14I	CCWWGG	3 cut(s)	400, 418, 448
EcoT22I	ATGCAT	1 cut(s)	462
ErhI	CCWWGG	3 cut(s)	400, 418, 448
Esp3I	CGTCTC	1 cut(s)	50
FaeI	CATG	5 cut(s)	146, 212, 305, 404, 422
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	5 cut(s)	142, 208, 301, 400, 418
FbaI	TGATCA	1 cut(s)	531
FspBI	CTAG	2 cut(s)	279, 449
GlaI	GCGC	2 cut(s)	468, 476
HaeIII	GGCC	2 cut(s)	194, 417
HapII	CCGG	1 cut(s)	136
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	2 cut(s)	469, 477
Hin1I	GRCGYC	1 cut(s)	298
Hin1II	CATG	5 cut(s)	146, 212, 305, 404, 422
Hin6I	GCGC	2 cut(s)	467, 475
HinP1I	GCGC	2 cut(s)	467, 475
HinfI	GANTC	2 cut(s)	139, 492
HpaII	CCGG	1 cut(s)	136
Hpy188I	TCNGA	5 cut(s)	16, 32, 127, 517, 531
Hpy188III	TCNNGA	5 cut(s)	136, 248, 260, 302, 326
Hpy99I	CGWCG	1 cut(s)	300
HpyAV	CCTTC	2 cut(s)	109, 323
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4IV	ACGT	3 cut(s)	298, 411, 526
HpyCH4V	TGCA	5 cut(s)	4, 152, 226, 460, 551
HpyF10VI	GCNNNNNNNGC	1 cut(s)	466
HpyF3I	CTNAG	1 cut(s)	23
HpySE526I	ACGT	3 cut(s)	298, 411, 526
Hsp92I	GRCGYC	1 cut(s)	298
Hsp92II	CATG	5 cut(s)	146, 212, 305, 404, 422
HspAI	GCGC	2 cut(s)	467, 475
Kpn2I	TCCGGA	1 cut(s)	135
Ksp22I	TGATCA	1 cut(s)	531
Kzo9I	GATC	3 cut(s)	159, 304, 531
LmnI	GCTCC	1 cut(s)	404
LpnPI	CCDG	3 cut(s)	149, 456, 555
LweI	GCATC	3 cut(s)	30, 36, 274
MaeI	CTAG	2 cut(s)	279, 449
MaeII	ACGT	3 cut(s)	298, 411, 526
MalI	GATC	3 cut(s)	161, 306, 533
MboI	GATC	3 cut(s)	159, 304, 531
MboII	GAAGA	2 cut(s)	80, 243
MfeI	CAATTG	1 cut(s)	74
MhlI	GDGCHC	1 cut(s)	426
MlsI	TGGCCA	2 cut(s)	194, 417
MluCI	AATT	3 cut(s)	5, 74, 545
MluNI	TGGCCA	2 cut(s)	194, 417
MlyI	GAGTC	1 cut(s)	133
MmeI	TCCRAC	3 cut(s)	196, 373, 458
MnlI	CCTC	7 cut(s)	101, 111, 133, 360, 373, 488, 506
Mox20I	TGGCCA	2 cut(s)	194, 417
Mph1103I	ATGCAT	1 cut(s)	462
MroI	TCCGGA	1 cut(s)	135
MscI	TGGCCA	2 cut(s)	194, 417
MslI	CAYNNNNRTG	2 cut(s)	147, 213
Msp20I	TGGCCA	2 cut(s)	194, 417
MspI	CCGG	1 cut(s)	136
MunI	CAATTG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	466
NcoI	CCATGG	2 cut(s)	400, 418
NdeII	GATC	3 cut(s)	159, 304, 531
NlaIII	CATG	5 cut(s)	146, 212, 305, 404, 422
NlaIV	GGNNCC	2 cut(s)	406, 425
NsiI	ATGCAT	1 cut(s)	462
PagI	TCATGA	1 cut(s)	301
PcsI	WCGNNNNNNNCGW	2 cut(s)	295, 343
PfeI	GAWTC	1 cut(s)	492
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
PpuMI	RGGWCCY	1 cut(s)	120
Psp1406I	AACGTT	1 cut(s)	411
Psp5II	RGGWCCY	1 cut(s)	120
PspN4I	GGNNCC	2 cut(s)	406, 425
PspPI	GGNCC	2 cut(s)	120, 539
PspPPI	RGGWCCY	1 cut(s)	120
RsaI	GTAC	1 cut(s)	557
RsaNI	GTAC	1 cut(s)	556
RseI	CAYNNNNRTG	2 cut(s)	147, 213
Sau3AI	GATC	3 cut(s)	159, 304, 531
Sau96I	GGNCC	2 cut(s)	120, 539
SchI	GAGTC	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	426
SfaNI	GCATC	3 cut(s)	30, 36, 274
SinI	GGWCC	2 cut(s)	120, 539
SmiMI	CAYNNNNRTG	2 cut(s)	147, 213
SmlI	CTYRAG	2 cut(s)	324, 340
SmoI	CTYRAG	2 cut(s)	324, 340
Sse9I	AATT	3 cut(s)	5, 74, 545
SspMI	CTAG	2 cut(s)	279, 449
StyI	CCWWGG	3 cut(s)	400, 418, 448
TaaI	ACNGT	1 cut(s)	362
TaiI	ACGT	3 cut(s)	301, 414, 529
TaqI	TCGA	1 cut(s)	295
TasI	AATT	3 cut(s)	5, 74, 545
TfiI	GAWTC	1 cut(s)	492
TscAI	CASTG	1 cut(s)	202
TspDTI	ATGAA	1 cut(s)	231
TspGWI	ACGGA	1 cut(s)	172
TspRI	CASTG	1 cut(s)	202
VpaK11BI	GGWCC	2 cut(s)	120, 539
XapI	RAATTY	1 cut(s)	545
XmaJI	CCTAGG	1 cut(s)	448
XspI	CTAG	2 cut(s)	279, 449
ZraI	GACGTC	1 cut(s)	299
Zsp2I	ATGCAT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.