Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0006963

Physical Location & Seq

Genomic Coordinates Forward (+)

51965018 .. 51970820

Gene Structure 5803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG266000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAAACGTCACTTGGATAGTGACCTACAGTTTGAGTTCATAAATGAGGATAGTGCCATAAACCTTTGGCAAGCGCTTCGCGAACGATATGGCAATGTCCACCACATCAAAACAACGATGCGTCTCTGTGGAAAAACAATCACAGAAAACCAATTGATTGAGAAAACCCTCAATACCTTCTCCATCCATGCTATGAGGTCCTCTAATTTATTTCGGACTCATGTAAATGCTAGACGGATTACAAGTTTTCAACAGTTTATTGAAGCTATGGCCATTGCTGAAAGACATGGCAACGAGCTTGTGAAAAGAGAAATTGATAGGCTTCAAGATAGCCATCAAGAGCATCGTCCTATGGCTAGAGAAAGTCGCCATCGACGTCATGATCCATACGATCAAAATGCTCAAGAAGGTAATCGCCCAAGGGGACAATCTCACGACCGTAGGAGGCGTGACTTTGAGGGAAGAAGGGTTGGAAACCATGGAGCCAACGTTGGCCATGGTCATCACTTTCCAACGCCACCCGTCCTAGGGACTATGCATATTGCCCCAATGCGCCTCAATCAAGGGAGAATCCTCTTTATGGGGTCTATTTCTGATATGGAATGTCTGATCAATGGACCTGAATTTCCAATGTACCTACAAAGGTTGTTCAAGGCCTTTGTTCTTGATGCCGACAACCTCATCCCCAAGATTGCTCCCCAAGCAGTTGAAAGTGCCGAGATACTTGAAGGAGATGGAGGAGTTGGAACCATCAAGAAGATCAACCTCGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bet_v_1

Protein Analysis

257

Amino Acids

29.61

Weight (kDa)

9.42

Isoelectric Point (pI)

59.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006963)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323081 RchiOBHm_Chr2g0168921 RchiOBHm_Chr3g0488021 RchiOBHm_Chr7g0240151
rosa_multiflora	Rmu_sc0000394.1_g000060 Rmu_sc0006867.1_g000028 Rmu_sc0015156.1_g000005
rosa_roxburghii	Rroxscaffold_2G00110370 Rroxscaffold_4G00296000 Rroxscaffold_4G00296010 Rroxscaffold_5G00378770
rosa_rugosa	Rorug06G0510400
rosa_samantha	Rh2BG204600 Rh2BG204700 Rh2BG440000 Rh2BG539600 Rh2DG026100 Rh2DG291000 Rh4CG266000 Rh5BG195600 Rh6AG373800 Rh6DG133200 Rh7CG424800 Rh7CG511100
rosa_wichuraiana	Rw4G020380 Rw6G018910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	379
AccII	CGCG	1 cut(s)	81
AclI	AACGTT	1 cut(s)	489
AclWI	GGATC	1 cut(s)	377
AcoI	YGGCCR	2 cut(s)	270, 493
AcsI	RAATTY	1 cut(s)	623
AcyI	GRCGYC	1 cut(s)	376
AfaI	GTAC	1 cut(s)	635
AfeI	AGCGCT	1 cut(s)	75
AfiI	CCNNNNNNNGG	3 cut(s)	527, 528, 580
AgsI	TTSAA	6 cut(s)	251, 263, 326, 652, 710, 728
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AluBI	AGCT	2 cut(s)	266, 298
AluI	AGCT	2 cut(s)	266, 298
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	1 cut(s)	377
Ama87I	CYCGRG	1 cut(s)	767
Aor51HI	AGCGCT	1 cut(s)	75
AoxI	GGCC	3 cut(s)	270, 493, 654
ApoI	RAATTY	1 cut(s)	623
ArsI	GACNNNNNNTTYG	2 cut(s)	14, 46
AspA2I	CCTAGG	1 cut(s)	526
AspLEI	GCGC	2 cut(s)	76, 555
AspS9I	GGNCC	2 cut(s)	198, 617
AvaI	CYCGRG	1 cut(s)	767
AvaII	GGWCC	2 cut(s)	198, 617
AvrII	CCTAGG	1 cut(s)	526
BalI	TGGCCA	2 cut(s)	272, 495
BccI	CCATC	5 cut(s)	191, 342, 378, 728, 758
BcgI	CGANNNNNNTGC	4 cut(s)	59, 93, 380, 414
BclI	TGATCA	1 cut(s)	609
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	3 cut(s)	231, 357, 527
BfmI	CTRYAG	1 cut(s)	26
BfoI	RGCGCY	1 cut(s)	77
BlnI	CCTAGG	1 cut(s)	526
Bme18I	GGWCC	2 cut(s)	198, 617
BmeT110I	CYCGRG	1 cut(s)	767
BmgT120I	GGNCC	2 cut(s)	198, 617
BmiI	GGNNCC	2 cut(s)	484, 748
BmsI	GCATC	3 cut(s)	108, 352, 658
BpuEI	CTTGAG	1 cut(s)	387
BsaBI	GATNNNNATC	1 cut(s)	333
BsaHI	GRCGYC	1 cut(s)	376
BsaJI	CCNNGG	5 cut(s)	419, 478, 496, 526, 766
BsaXI	ACNNNNNCTCC	2 cut(s)	474, 504
Bsc4I	CCNNNNNNNGG	3 cut(s)	527, 528, 580
Bse3DI	GCAATG	2 cut(s)	100, 273
Bse8I	GATNNNNATC	1 cut(s)	333
BseDI	CCNNGG	5 cut(s)	419, 478, 496, 526, 766
BseGI	GGATG	2 cut(s)	183, 681
BseJI	GATNNNNATC	1 cut(s)	333
BseLI	CCNNNNNNNGG	3 cut(s)	527, 528, 580
BseMI	GCAATG	2 cut(s)	100, 273
BseRI	GAGGAG	1 cut(s)	753
Bsh1236I	CGCG	1 cut(s)	81
Bsh1285I	CGRYCG	1 cut(s)	439
BshFI	GGCC	3 cut(s)	272, 495, 656
BsiEI	CGRYCG	1 cut(s)	439
BsiHKCI	CYCGRG	1 cut(s)	767
BslFI	GGGAC	2 cut(s)	438, 544
BslI	CCNNNNNNNGG	3 cut(s)	527, 528, 580
BsmAI	GTCTC	1 cut(s)	128
BsmBI	CGTCTC	1 cut(s)	128
BsmFI	GGGAC	2 cut(s)	438, 544
BsnI	GGCC	3 cut(s)	272, 495, 656
BsoBI	CYCGRG	1 cut(s)	767
Bsp143I	GATC	4 cut(s)	382, 391, 609, 759
Bsp19I	CCATGG	2 cut(s)	478, 496
Bsp68I	TCGCGA	1 cut(s)	81
BspANI	GGCC	3 cut(s)	272, 495, 656
BspFNI	CGCG	1 cut(s)	81
BspHI	TCATGA	1 cut(s)	379
BspLI	GGNNCC	2 cut(s)	484, 748
BspPI	GGATC	1 cut(s)	377
BsrDI	GCAATG	2 cut(s)	100, 273
BssECI	CCNNGG	5 cut(s)	419, 478, 496, 526, 766
BssMI	GATC	4 cut(s)	382, 391, 609, 759
BssNI	GRCGYC	1 cut(s)	376
BssT1I	CCWWGG	4 cut(s)	419, 478, 496, 526
Bst4CI	ACNGT	3 cut(s)	30, 255, 440
BstACI	GRCGYC	1 cut(s)	376
BstC8I	GCNNGC	1 cut(s)	72
BstDSI	CCRYGG	2 cut(s)	478, 496
BstF5I	GGATG	2 cut(s)	183, 681
BstFNI	CGCG	1 cut(s)	81
BstH2I	RGCGCY	1 cut(s)	77
BstHHI	GCGC	2 cut(s)	76, 555
BstKTI	GATC	4 cut(s)	385, 394, 612, 762
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	4 cut(s)	382, 391, 609, 759
BstMCI	CGRYCG	1 cut(s)	439
BstMWI	GCNNNNNNNGC	1 cut(s)	701
BstSFI	CTRYAG	1 cut(s)	26
BstUI	CGCG	1 cut(s)	81
BsuRI	GGCC	3 cut(s)	272, 495, 656
BtgI	CCRYGG	2 cut(s)	478, 496
BtsCI	GGATG	2 cut(s)	183, 681
BtuMI	TCGCGA	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	72
CciI	TCATGA	1 cut(s)	379
CfoI	GCGC	2 cut(s)	76, 555
Cfr13I	GGNCC	2 cut(s)	198, 617
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	634
CviAII	CATG	6 cut(s)	188, 221, 287, 380, 479, 497
CviJI	RGCY	9 cut(s)	266, 272, 298, 322, 333, 356, 485, 495, 656
CviKI_1	RGCY	9 cut(s)	266, 272, 298, 322, 333, 356, 485, 495, 656
CviQI	GTAC	1 cut(s)	634
DpnI	GATC	4 cut(s)	384, 393, 611, 761
DpnII	GATC	4 cut(s)	382, 391, 609, 759
EaeI	YGGCCR	2 cut(s)	270, 493
Eco130I	CCWWGG	4 cut(s)	419, 478, 496, 526
Eco147I	AGGCCT	1 cut(s)	656
Eco47I	GGWCC	2 cut(s)	198, 617
Eco47III	AGCGCT	1 cut(s)	75
Eco88I	CYCGRG	1 cut(s)	767
EcoO109I	RGGNCCY	1 cut(s)	198
EcoT14I	CCWWGG	4 cut(s)	419, 478, 496, 526
EcoT22I	ATGCAT	1 cut(s)	540
ErhI	CCWWGG	4 cut(s)	419, 478, 496, 526
Esp3I	CGTCTC	1 cut(s)	128
FaeI	CATG	6 cut(s)	191, 224, 290, 383, 482, 500
FaqI	GGGAC	2 cut(s)	438, 544
FatI	CATG	6 cut(s)	187, 220, 286, 379, 478, 496
FbaI	TGATCA	1 cut(s)	609
FokI	GGATG	2 cut(s)	170, 668
FspBI	CTAG	3 cut(s)	231, 357, 527
GlaI	GCGC	2 cut(s)	75, 554
HaeII	RGCGCY	1 cut(s)	77
HaeIII	GGCC	3 cut(s)	272, 495, 656
HgaI	GACGC	1 cut(s)	110
HhaI	GCGC	2 cut(s)	76, 555
Hin1I	GRCGYC	1 cut(s)	376
Hin1II	CATG	6 cut(s)	191, 224, 290, 383, 482, 500
Hin6I	GCGC	2 cut(s)	74, 553
HinP1I	GCGC	2 cut(s)	74, 553
HinfI	GANTC	2 cut(s)	217, 570
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	3 cut(s)	216, 595, 609
Hpy188III	TCNNGA	8 cut(s)	80, 326, 338, 380, 404, 434, 665, 754
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	1 cut(s)	378
HpyAV	CCTTC	4 cut(s)	187, 401, 459, 722
HpyCH4III	ACNGT	3 cut(s)	30, 255, 440
HpyCH4IV	ACGT	3 cut(s)	7, 376, 489
HpyCH4V	TGCA	1 cut(s)	538
HpyF10VI	GCNNNNNNNGC	1 cut(s)	701
HpySE526I	ACGT	3 cut(s)	7, 376, 489
Hsp92I	GRCGYC	1 cut(s)	376
Hsp92II	CATG	6 cut(s)	191, 224, 290, 383, 482, 500
HspAI	GCGC	2 cut(s)	74, 553
Ksp22I	TGATCA	1 cut(s)	609
Kzo9I	GATC	4 cut(s)	382, 391, 609, 759
LmnI	GCTCC	2 cut(s)	482, 700
LpnPI	CCDG	1 cut(s)	633
LweI	GCATC	3 cut(s)	108, 352, 658
MaeI	CTAG	3 cut(s)	231, 357, 527
MaeII	ACGT	3 cut(s)	7, 376, 489
MaeIII	GTNAC	3 cut(s)	8, 20, 449
MalI	GATC	4 cut(s)	384, 393, 611, 761
MboI	GATC	4 cut(s)	382, 391, 609, 759
MboII	GAAGA	2 cut(s)	474, 769
MfeI	CAATTG	1 cut(s)	152
MlsI	TGGCCA	2 cut(s)	272, 495
MluCI	AATT	4 cut(s)	152, 205, 312, 623
MluNI	TGGCCA	2 cut(s)	272, 495
MlyI	GAGTC	1 cut(s)	211
MmeI	TCCRAC	3 cut(s)	451, 536, 724
Mox20I	TGGCCA	2 cut(s)	272, 495
Mph1103I	ATGCAT	1 cut(s)	540
MscI	TGGCCA	2 cut(s)	272, 495
MslI	CAYNNNNRTG	1 cut(s)	225
Msp20I	TGGCCA	2 cut(s)	272, 495
MunI	CAATTG	1 cut(s)	152
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	701
NcoI	CCATGG	2 cut(s)	478, 496
NdeII	GATC	4 cut(s)	382, 391, 609, 759
NlaIII	CATG	6 cut(s)	191, 224, 290, 383, 482, 500
NlaIV	GGNNCC	2 cut(s)	484, 748
NmeAIII	GCCGAG	1 cut(s)	742
NmuCI	GTSAC	3 cut(s)	8, 20, 449
NruI	TCGCGA	1 cut(s)	81
NsiI	ATGCAT	1 cut(s)	540
PagI	TCATGA	1 cut(s)	379
PceI	AGGCCT	1 cut(s)	656
PcsI	WCGNNNNNNNCGW	1 cut(s)	373
PfeI	GAWTC	1 cut(s)	570
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
PpuMI	RGGWCCY	1 cut(s)	198
Psp1406I	AACGTT	1 cut(s)	489
Psp5II	RGGWCCY	1 cut(s)	198
PspN4I	GGNNCC	2 cut(s)	484, 748
PspPI	GGNCC	2 cut(s)	198, 617
PspPPI	RGGWCCY	1 cut(s)	198
RruI	TCGCGA	1 cut(s)	81
RsaI	GTAC	1 cut(s)	635
RsaNI	GTAC	1 cut(s)	634
RseI	CAYNNNNRTG	1 cut(s)	225
Sau3AI	GATC	4 cut(s)	382, 391, 609, 759
Sau96I	GGNCC	2 cut(s)	198, 617
SchI	GAGTC	1 cut(s)	211
SfaNI	GCATC	3 cut(s)	108, 352, 658
SfcI	CTRYAG	1 cut(s)	26
SinI	GGWCC	2 cut(s)	198, 617
SmiMI	CAYNNNNRTG	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	402
SmoI	CTYRAG	1 cut(s)	402
Sse9I	AATT	4 cut(s)	152, 205, 312, 623
SseBI	AGGCCT	1 cut(s)	656
SspMI	CTAG	3 cut(s)	231, 357, 527
StuI	AGGCCT	1 cut(s)	656
StyI	CCWWGG	4 cut(s)	419, 478, 496, 526
TaaI	ACNGT	3 cut(s)	30, 255, 440
TaiI	ACGT	3 cut(s)	10, 379, 492
TaqI	TCGA	1 cut(s)	373
TasI	AATT	4 cut(s)	152, 205, 312, 623
TfiI	GAWTC	1 cut(s)	570
TseFI	GTSAC	3 cut(s)	8, 20, 449
Tsp45I	GTSAC	3 cut(s)	8, 20, 449
TspDTI	ATGAA	2 cut(s)	17, 28
TspGWI	ACGGA	1 cut(s)	250
VpaK11BI	GGWCC	2 cut(s)	198, 617
XapI	RAATTY	1 cut(s)	623
XmaJI	CCTAGG	1 cut(s)	526
XspI	CTAG	3 cut(s)	231, 357, 527
ZraI	GACGTC	1 cut(s)	377
Zsp2I	ATGCAT	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.