Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006963

Physical Location & Seq

Genomic Coordinates Reverse (-)

66089675 .. 66094900

Gene Structure 5226 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21526

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGAGGTCCTCTGACTTATTCCGGACTCATGTAAATGCAAGACGGATCACAAGTTTCCAACAGCTTATTGCAGCTATGGCCACTGCTGAAAGACATGGCAATGAACTTGTGAAAAGAGAAATTGATAGGCTTCAAGATAGCTATCAAGAGCATCTTTTCGTGGAAGCATTGACTCCGAAACTAACTTGTTTTTGTTTCATCTTTCAGGATGTCAAACACAAACAAACTCGATTTTGTTCCATTGGATTATGCAGGCAAAAGGTACTTAATTTGGGTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

93

Amino Acids

10.89

Weight (kDa)

9.38

Isoelectric Point (pI)

45.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006963)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323081 RchiOBHm_Chr2g0168921 RchiOBHm_Chr3g0488021 RchiOBHm_Chr7g0240151
rosa_multiflora	Rmu_sc0000394.1_g000060 Rmu_sc0006867.1_g000028 Rmu_sc0015156.1_g000005
rosa_roxburghii	Rroxscaffold_2G00110370 Rroxscaffold_4G00296000 Rroxscaffold_4G00296010 Rroxscaffold_5G00378770
rosa_rugosa	Rorug06G0510400
rosa_samantha	Rh2BG204600 Rh2BG204700 Rh2BG440000 Rh2BG539600 Rh2DG026100 Rh2DG291000 Rh4CG266000 Rh5BG195600 Rh6AG373800 Rh6DG133200 Rh7CG424800 Rh7CG511100
rosa_wichuraiana	Rw4G020380 Rw6G018910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	21
AclWI	GGATC	1 cut(s)	53
AcoI	YGGCCR	1 cut(s)	78
AfaI	GTAC	1 cut(s)	264
AgsI	TTSAA	1 cut(s)	134
AluBI	AGCT	3 cut(s)	64, 74, 141
AluI	AGCT	3 cut(s)	64, 74, 141
AlwI	GGATC	1 cut(s)	53
Aor13HI	TCCGGA	1 cut(s)	21
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	6
AvaII	GGWCC	1 cut(s)	6
BalI	TGGCCA	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	83
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
Bme18I	GGWCC	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	160
BsaBI	GATNNNNATC	1 cut(s)	141
BsaWI	WCCGGW	1 cut(s)	21
Bse3DI	GCAATG	1 cut(s)	106
Bse8I	GATNNNNATC	1 cut(s)	141
BseAI	TCCGGA	1 cut(s)	21
BseGI	GGATG	1 cut(s)	214
BseJI	GATNNNNATC	1 cut(s)	141
BseMI	GCAATG	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	83
BshFI	GGCC	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	22
BsnI	GGCC	1 cut(s)	80
Bsp13I	TCCGGA	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	45
BspANI	GGCC	1 cut(s)	80
BspEI	TCCGGA	1 cut(s)	21
BspPI	GGATC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	106
BssMI	GATC	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	214
BstKTI	GATC	1 cut(s)	48
BstMBI	GATC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstV1I	GCAGC	1 cut(s)	83
BsuRI	GGCC	1 cut(s)	80
BtsCI	GGATG	1 cut(s)	214
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	2 cut(s)	81, 277
Cac8I	GCNNGC	1 cut(s)	254
Cfr13I	GGNCC	1 cut(s)	6
Csp6I	GTAC	1 cut(s)	263
CviAII	CATG	2 cut(s)	29, 95
CviJI	RGCY	5 cut(s)	64, 74, 80, 130, 141
CviKI_1	RGCY	5 cut(s)	64, 74, 80, 130, 141
CviQI	GTAC	1 cut(s)	263
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
EaeI	YGGCCR	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	6
FaeI	CATG	2 cut(s)	32, 98
FaiI	YATR	4 cut(s)	30, 77, 96, 250
FalI	AAGNNNNNCTT	2 cut(s)	138, 170
FatI	CATG	2 cut(s)	28, 94
Fnu4HI	GCNGC	1 cut(s)	72
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	1 cut(s)	72
GluI	GCNGC	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	1 cut(s)	22
Hin1II	CATG	2 cut(s)	32, 98
HinfI	GANTC	2 cut(s)	25, 172
HpaII	CCGG	1 cut(s)	22
Hpy188I	TCNGA	2 cut(s)	13, 177
Hpy188III	TCNNGA	4 cut(s)	22, 134, 146, 206
HpyCH4V	TGCA	3 cut(s)	38, 71, 252
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
Hsp92II	CATG	2 cut(s)	32, 98
Kpn2I	TCCGGA	1 cut(s)	21
Kzo9I	GATC	1 cut(s)	45
LpnPI	CCDG	3 cut(s)	35, 191, 238
Lsp1109I	GCAGC	1 cut(s)	83
LweI	GCATC	1 cut(s)	160
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	2 cut(s)	120, 268
MluNI	TGGCCA	1 cut(s)	80
MlyI	GAGTC	2 cut(s)	19, 166
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	1 cut(s)	19
Mox20I	TGGCCA	1 cut(s)	80
MroI	TCCGGA	1 cut(s)	21
MscI	TGGCCA	1 cut(s)	80
MseI	TTAA	1 cut(s)	267
MslI	CAYNNNNRTG	2 cut(s)	33, 99
Msp20I	TGGCCA	1 cut(s)	80
MspI	CCGG	1 cut(s)	22
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeII	GATC	1 cut(s)	45
NlaIII	CATG	2 cut(s)	32, 98
NmuCI	GTSAC	1 cut(s)	275
PkrI	GCNGC	1 cut(s)	73
PleI	GAGTC	2 cut(s)	19, 166
PpsI	GAGTC	2 cut(s)	19, 166
PpuMI	RGGWCCY	1 cut(s)	6
Psp5II	RGGWCCY	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	6
PspPPI	RGGWCCY	1 cut(s)	6
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
RseI	CAYNNNNRTG	2 cut(s)	33, 99
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	1 cut(s)	45
Sau96I	GGNCC	1 cut(s)	6
SchI	GAGTC	2 cut(s)	19, 166
SetI	ASST	5 cut(s)	8, 66, 76, 143, 264
SfaNI	GCATC	1 cut(s)	160
SinI	GGWCC	1 cut(s)	6
SmiMI	CAYNNNNRTG	2 cut(s)	33, 99
Sse9I	AATT	2 cut(s)	120, 268
TaqI	TCGA	1 cut(s)	229
TasI	AATT	2 cut(s)	120, 268
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	1 cut(s)	71
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	2 cut(s)	117, 187
TspGWI	ACGGA	1 cut(s)	58
TspRI	CASTG	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.