Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000394.1

Orthogroup ID

OG0006963

Physical Location & Seq

Genomic Coordinates Reverse (-)

206915 .. 207163

Gene Structure 249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000394.1_g000060.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

atgagtaacctgaacaaattggactttgctccattggaaataactggctctgaatatcacaggtgggttcatgatatcagccagcatctcaaggccgatggaatcttggatacgattctcgagcctagacaggacgtgctaactgttgagcaagctcaagctttggaagcaaatagagcagccttagaggcaaataaggcgaaagctgccatcatcctaatgactcgtcatatggatgattcgctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Retrotran_gag_2 zf-CCHC

Protein Analysis

82

Amino Acids

9.21

Weight (kDa)

5.15

Isoelectric Point (pI)

49.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006963)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323081 RchiOBHm_Chr2g0168921 RchiOBHm_Chr3g0488021 RchiOBHm_Chr7g0240151
rosa_multiflora	Rmu_sc0000394.1_g000060 Rmu_sc0006867.1_g000028 Rmu_sc0015156.1_g000005
rosa_roxburghii	Rroxscaffold_2G00110370 Rroxscaffold_4G00296000 Rroxscaffold_4G00296010 Rroxscaffold_5G00378770
rosa_rugosa	Rorug06G0510400
rosa_samantha	Rh2BG204600 Rh2BG204700 Rh2BG440000 Rh2BG539600 Rh2DG026100 Rh2DG291000 Rh4CG266000 Rh5BG195600 Rh6AG373800 Rh6DG133200 Rh7CG424800 Rh7CG511100
rosa_wichuraiana	Rw4G020380 Rw6G018910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AjiI	CACGTC	1 cut(s)	136
AluBI	AGCT	3 cut(s)	155, 161, 206
AluI	AGCT	3 cut(s)	155, 161, 206
Ama87I	CYCGRG	1 cut(s)	119
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	2 cut(s)	179, 206
AvaI	CYCGRG	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	191, 193
BccI	CCATC	2 cut(s)	92, 218
BciVI	GTATCC	1 cut(s)	103
BfaI	CTAG	2 cut(s)	126, 247
BfuI	GTATCC	1 cut(s)	103
BglI	GCCNNNNNGGC	1 cut(s)	188
BisI	GCNGC	2 cut(s)	180, 207
BlsI	GCNGC	2 cut(s)	181, 208
BmeT110I	CYCGRG	1 cut(s)	119
BmgBI	CACGTC	1 cut(s)	136
BmsI	GCATC	1 cut(s)	94
BpuEI	CTTGAG	2 cut(s)	74, 141
Bse1I	ACTGG	1 cut(s)	49
BseGI	GGATG	2 cut(s)	213, 241
BseNI	ACTGG	1 cut(s)	49
BseXI	GCAGC	2 cut(s)	191, 193
BshFI	GGCC	1 cut(s)	95
BsiHKCI	CYCGRG	1 cut(s)	119
BsnI	GGCC	1 cut(s)	95
BsoBI	CYCGRG	1 cut(s)	119
BspANI	GGCC	1 cut(s)	95
BspHI	TCATGA	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	49
Bst4CI	ACNGT	1 cut(s)	145
BstC8I	GCNNGC	2 cut(s)	83, 153
BstDEI	CTNAG	1 cut(s)	184
BstF5I	GGATG	2 cut(s)	213, 241
BstMWI	GCNNNNNNNGC	5 cut(s)	167, 176, 188, 197, 206
BstV1I	GCAGC	2 cut(s)	191, 193
BsuI	GTATCC	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	95
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	2 cut(s)	213, 241
Cac8I	GCNNGC	2 cut(s)	83, 153
CciI	TCATGA	1 cut(s)	70
CviAII	CATG	1 cut(s)	71
CviJI	RGCY	8 cut(s)	48, 81, 95, 124, 155, 161, 182, 206
CviKI_1	RGCY	8 cut(s)	48, 81, 95, 124, 155, 161, 182, 206
DdeI	CTNAG	1 cut(s)	184
Eco32I	GATATC	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	119
EcoRV	GATATC	1 cut(s)	76
FaeI	CATG	1 cut(s)	74
FaiI	YATR	3 cut(s)	72, 231, 233
FatI	CATG	1 cut(s)	70
FauNDI	CATATG	1 cut(s)	231
Fnu4HI	GCNGC	2 cut(s)	180, 207
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	2 cut(s)	180, 207
FspBI	CTAG	2 cut(s)	126, 247
GluI	GCNGC	2 cut(s)	180, 207
HaeIII	GGCC	1 cut(s)	95
Hin1II	CATG	1 cut(s)	74
HindIII	AAGCTT	1 cut(s)	159
HinfI	GANTC	4 cut(s)	102, 115, 223, 239
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	2 cut(s)	71, 119
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	5 cut(s)	167, 176, 188, 197, 206
HpyF3I	CTNAG	1 cut(s)	184
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	1 cut(s)	74
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	5 cut(s)	23, 30, 46, 95, 116
Lsp1109I	GCAGC	2 cut(s)	191, 193
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	2 cut(s)	126, 247
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	1 cut(s)	5
MluCI	AATT	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	217
MnlI	CCTC	1 cut(s)	181
MslI	CAYNNNNRTG	2 cut(s)	218, 234
MwoI	GCNNNNNNNGC	5 cut(s)	167, 176, 188, 197, 206
NdeI	CATATG	1 cut(s)	231
NlaIII	CATG	1 cut(s)	74
PaeR7I	CTCGAG	1 cut(s)	119
PagI	TCATGA	1 cut(s)	70
PfeI	GAWTC	3 cut(s)	102, 115, 239
PkrI	GCNGC	2 cut(s)	181, 208
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
RseI	CAYNNNNRTG	2 cut(s)	218, 234
SatI	GCNGC	2 cut(s)	180, 207
SchI	GAGTC	1 cut(s)	217
SetI	ASST	6 cut(s)	12, 65, 138, 157, 163, 208
SfaNI	GCATC	1 cut(s)	94
Sfr274I	CTCGAG	1 cut(s)	119
SlaI	CTCGAG	1 cut(s)	119
SmiMI	CAYNNNNRTG	2 cut(s)	218, 234
SmlI	CTYRAG	3 cut(s)	89, 119, 156
SmoI	CTYRAG	3 cut(s)	89, 119, 156
Sse9I	AATT	1 cut(s)	17
SspMI	CTAG	2 cut(s)	126, 247
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	1 cut(s)	120
TasI	AATT	1 cut(s)	17
TfiI	GAWTC	3 cut(s)	102, 115, 239
TseI	GCWGC	2 cut(s)	179, 206
TspDTI	ATGAA	1 cut(s)	59
XhoI	CTCGAG	1 cut(s)	119
XspI	CTAG	2 cut(s)	126, 247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.