Rroxscaffold_5G00378770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0006963
Physical Location & Seq
Forward (+)
59210044 .. 59211538
1495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00378770.1

Sequence Viewer

Length: 489 bp
ATGAAGTCGCGTATTCAACAACTGAAATTCTCTTCAACATCACCTTTTCCACCCTTGCACCTAGCCCAAGCTAGCCTAGCCGCTGCTGCCCGCCTGCTCGCCCCTGCACTGCACGCTGCCCCTGCAGCCCTTACGCACCCGTGTGCCGCCTACTGCCCCTGCAGCACAGCAGGACGCTCGTTCCTATGCAGATCATCCTGCTTGCACGCCCCAAAACGTCTTGATTGGGACCTCAGATCAAAATCCTTCCTTCATCAAAGTCCTCTCGATTTATTCCGGACTCATGTAAATGCTAGATGGATCTCAAGTTTTCAACAGCTTATTGAAGCTATGGCCACCGCTGAAAGACATGGCAATGAGCTTGTGAAAAGAGAAATTGATAGGCTTCAAGATAGCCATCAAGAGCAACGTCCTATGGCTAGAGAAAGTAGCCATCGACATCGTAATCCATACGATCGAAATGCTCAAGAAGGTAATCGCCCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.35

Weight (kDa)

10.15

Isoelectric Point (pI)

73.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 10
AccIII TCCGGA 1 cut(s) 276
AciI CCGC 4 cut(s) 81, 91, 147, 339
AclWI GGATC 1 cut(s) 308
AcoI YGGCCR 1 cut(s) 333
AcsI RAATTY 1 cut(s) 26
AgsI TTSAA 5 cut(s) 17, 36, 314, 326, 389
AleI CACNNNNGTG 1 cut(s) 141
AluBI AGCT 4 cut(s) 71, 319, 329, 361
AluI AGCT 4 cut(s) 71, 319, 329, 361
AlwI GGATC 1 cut(s) 308
Aor13HI TCCGGA 1 cut(s) 276
AoxI GGCC 1 cut(s) 333
ApeKI GCWGC 5 cut(s) 83, 86, 116, 125, 162
ApoI RAATTY 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 229
AsuHPI GGTGA 1 cut(s) 33
AsuNHI GCTAGC 1 cut(s) 71
AvaII GGWCC 1 cut(s) 229
BalI TGGCCA 1 cut(s) 335
BbvI GCAGC 5 cut(s) 70, 73, 103, 137, 174
BccI CCATC 3 cut(s) 291, 405, 441
BcgI CGANNNNNNTGC 4 cut(s) 159, 193, 443, 477
BfaI CTAG 5 cut(s) 62, 72, 77, 294, 420
BfmI CTRYAG 2 cut(s) 123, 160
BisI GCNGC 7 cut(s) 81, 84, 87, 117, 126, 147, 163
BlsI GCNGC 7 cut(s) 82, 85, 88, 118, 127, 148, 164
Bme18I GGWCC 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 229
BmiI GGNNCC 1 cut(s) 230
BmtI GCTAGC 1 cut(s) 75
BpuEI CTTGAG 2 cut(s) 289, 450
BsaBI GATNNNNATC 2 cut(s) 241, 396
BsaJI CCNNGG 1 cut(s) 482
BsaWI WCCGGW 1 cut(s) 276
Bse3DI GCAATG 1 cut(s) 361
Bse8I GATNNNNATC 2 cut(s) 241, 396
BseAI TCCGGA 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 482
BseGI GGATG 1 cut(s) 194
BseJI GATNNNNATC 2 cut(s) 241, 396
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 1 cut(s) 247
BseXI GCAGC 5 cut(s) 70, 73, 103, 137, 174
BsgI GTGCAG 2 cut(s) 90, 95
Bsh1236I CGCG 1 cut(s) 10
Bsh1285I CGRYCG 1 cut(s) 457
BshFI GGCC 1 cut(s) 335
BsiEI CGRYCG 1 cut(s) 457
BsiSI CCGG 1 cut(s) 277
BslFI GGGAC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 242
BsnI GGCC 1 cut(s) 335
Bsp13I TCCGGA 1 cut(s) 276
Bsp143I GATC 4 cut(s) 191, 236, 300, 454
BspACI CCGC 4 cut(s) 81, 91, 147, 339
BspANI GGCC 1 cut(s) 335
BspCNI CTCAG 1 cut(s) 246
BspEI TCCGGA 1 cut(s) 276
BspFNI CGCG 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 230
BspMAI CTGCAG 2 cut(s) 127, 164
BspOI GCTAGC 1 cut(s) 75
BspPI GGATC 1 cut(s) 308
BsrDI GCAATG 1 cut(s) 361
BssECI CCNNGG 1 cut(s) 482
BssMI GATC 4 cut(s) 191, 236, 300, 454
BssT1I CCWWGG 1 cut(s) 482
Bst6I CTCTTC 1 cut(s) 37
BstC8I GCNNGC 7 cut(s) 73, 91, 95, 99, 114, 203, 207
BstDEI CTNAG 1 cut(s) 233
BstF5I GGATG 1 cut(s) 194
BstFNI CGCG 1 cut(s) 10
BstKTI GATC 4 cut(s) 194, 239, 303, 457
BstMBI GATC 4 cut(s) 191, 236, 300, 454
BstMCI CGRYCG 1 cut(s) 457
BstMWI GCNNNNNNNGC 6 cut(s) 77, 86, 113, 122, 125, 162
BstSFI CTRYAG 2 cut(s) 123, 160
BstUI CGCG 1 cut(s) 10
BstV1I GCAGC 5 cut(s) 70, 73, 103, 137, 174
BstX2I RGATCY 1 cut(s) 300
BstYI RGATCY 1 cut(s) 300
BsuRI GGCC 1 cut(s) 335
BtsCI GGATG 1 cut(s) 194
BtsI GCAGTG 1 cut(s) 107
BtsIMutI CAGTG 1 cut(s) 107
Cac8I GCNNGC 7 cut(s) 73, 91, 95, 99, 114, 203, 207
Cfr13I GGNCC 1 cut(s) 229
CseI GACGC 1 cut(s) 183
CviAII CATG 2 cut(s) 284, 350
DdeI CTNAG 1 cut(s) 233
DpnI GATC 4 cut(s) 193, 238, 302, 456
DpnII GATC 4 cut(s) 191, 236, 300, 454
EaeI YGGCCR 1 cut(s) 333
Eam1104I CTCTTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 482
Eco47I GGWCC 1 cut(s) 229
EcoO109I RGGNCCY 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 482
ErhI CCWWGG 1 cut(s) 482
FaeI CATG 2 cut(s) 287, 353
FaiI YATR 6 cut(s) 187, 285, 332, 351, 416, 451
FaqI GGGAC 1 cut(s) 242
FatI CATG 2 cut(s) 283, 349
FauI CCCGC 1 cut(s) 98
Fnu4HI GCNGC 7 cut(s) 81, 84, 87, 117, 126, 147, 163
FokI GGATG 1 cut(s) 181
Fsp4HI GCNGC 7 cut(s) 81, 84, 87, 117, 126, 147, 163
FspBI CTAG 5 cut(s) 62, 72, 77, 294, 420
GluI GCNGC 7 cut(s) 81, 84, 87, 117, 126, 147, 163
HaeIII GGCC 1 cut(s) 335
HapII CCGG 1 cut(s) 277
HgaI GACGC 1 cut(s) 183
Hin1II CATG 2 cut(s) 287, 353
HinfI GANTC 1 cut(s) 280
HpaII CCGG 1 cut(s) 277
HphI GGTGA 1 cut(s) 33
Hpy188I TCNGA 1 cut(s) 236
Hpy188III TCNNGA 6 cut(s) 221, 266, 277, 389, 401, 467
HpyAV CCTTC 3 cut(s) 256, 260, 464
HpyCH4IV ACGT 2 cut(s) 217, 409
HpyCH4V TGCA 7 cut(s) 58, 107, 112, 125, 162, 189, 205
HpyF10VI GCNNNNNNNGC 6 cut(s) 77, 86, 113, 122, 125, 162
HpyF3I CTNAG 1 cut(s) 233
HpySE526I ACGT 2 cut(s) 217, 409
Hsp92II CATG 2 cut(s) 287, 353
Kpn2I TCCGGA 1 cut(s) 276
Kzo9I GATC 4 cut(s) 191, 236, 300, 454
LpnPI CCDG 7 cut(s) 107, 117, 135, 156, 172, 211, 290
Lsp1109I GCAGC 5 cut(s) 70, 73, 103, 137, 174
MaeI CTAG 5 cut(s) 62, 72, 77, 294, 420
MaeII ACGT 2 cut(s) 217, 409
MalI GATC 4 cut(s) 193, 238, 302, 456
MboI GATC 4 cut(s) 191, 236, 300, 454
MboII GAAGA 1 cut(s) 24
MflI RGATCY 1 cut(s) 300
MlsI TGGCCA 1 cut(s) 335
MluCI AATT 2 cut(s) 26, 375
MluNI TGGCCA 1 cut(s) 335
MlyI GAGTC 1 cut(s) 274
MnlI CCTC 2 cut(s) 242, 273
Mox20I TGGCCA 1 cut(s) 335
MroI TCCGGA 1 cut(s) 276
MscI TGGCCA 1 cut(s) 335
MslI CAYNNNNRTG 3 cut(s) 141, 288, 354
Msp20I TGGCCA 1 cut(s) 335
MspA1I CMGCKG 2 cut(s) 83, 341
MspI CCGG 1 cut(s) 277
MvnI CGCG 1 cut(s) 10
MwoI GCNNNNNNNGC 6 cut(s) 77, 86, 113, 122, 125, 162
NdeII GATC 4 cut(s) 191, 236, 300, 454
NheI GCTAGC 1 cut(s) 71
NlaIII CATG 2 cut(s) 287, 353
NlaIV GGNNCC 1 cut(s) 230
OliI CACNNNNGTG 1 cut(s) 141
PkrI GCNGC 7 cut(s) 82, 85, 88, 118, 127, 148, 164
Ple19I CGATCG 1 cut(s) 457
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
PpuMI RGGWCCY 1 cut(s) 229
Psp5II RGGWCCY 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 230
PspPI GGNCC 1 cut(s) 229
PspPPI RGGWCCY 1 cut(s) 229
PstI CTGCAG 2 cut(s) 127, 164
PsuI RGATCY 1 cut(s) 300
PvuI CGATCG 1 cut(s) 457
RseI CAYNNNNRTG 3 cut(s) 141, 288, 354
SatI GCNGC 7 cut(s) 81, 84, 87, 117, 126, 147, 163
Sau3AI GATC 4 cut(s) 191, 236, 300, 454
Sau96I GGNCC 1 cut(s) 229
SchI GAGTC 1 cut(s) 274
SfcI CTRYAG 2 cut(s) 123, 160
SinI GGWCC 1 cut(s) 229
SmiMI CAYNNNNRTG 3 cut(s) 141, 288, 354
SmlI CTYRAG 2 cut(s) 304, 465
SmoI CTYRAG 2 cut(s) 304, 465
Sse9I AATT 2 cut(s) 26, 375
SsiI CCGC 4 cut(s) 81, 91, 147, 339
SspMI CTAG 5 cut(s) 62, 72, 77, 294, 420
StyI CCWWGG 1 cut(s) 482
TaiI ACGT 2 cut(s) 220, 412
TaqI TCGA 3 cut(s) 267, 436, 457
TasI AATT 2 cut(s) 26, 375
TauI GCSGC 2 cut(s) 83, 149
TscAI CASTG 1 cut(s) 114
TseI GCWGC 5 cut(s) 83, 86, 116, 125, 162
TspDTI ATGAA 2 cut(s) 17, 242
TspRI CASTG 1 cut(s) 114
VpaK11BI GGWCC 1 cut(s) 229
XapI RAATTY 1 cut(s) 26
XspI CTAG 5 cut(s) 62, 72, 77, 294, 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.