gag-polypeptide of LTR copia-type
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0323081 RchiOBHm_Chr2g0168921 RchiOBHm_Chr3g0488021 RchiOBHm_Chr7g0240151 |
| rosa_multiflora | Rmu_sc0000394.1_g000060 Rmu_sc0006867.1_g000028 Rmu_sc0015156.1_g000005 |
| rosa_roxburghii | Rroxscaffold_2G00110370 Rroxscaffold_4G00296000 Rroxscaffold_4G00296010 Rroxscaffold_5G00378770 |
| rosa_rugosa | Rorug06G0510400 |
| rosa_samantha | Rh2BG204600 Rh2BG204700 Rh2BG440000 Rh2BG539600 Rh2DG026100 Rh2DG291000 Rh4CG266000 Rh5BG195600 Rh6AG373800 Rh6DG133200 Rh7CG424800 Rh7CG511100 |
| rosa_wichuraiana | Rw4G020380 Rw6G018910 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 270 |
| AclWI | GGATC | 1 cut(s) | 76 |
| AfaI | GTAC | 1 cut(s) | 56 |
| AgsI | TTSAA | 1 cut(s) | 137 |
| AluBI | AGCT | 3 cut(s) | 124, 143, 253 |
| AluI | AGCT | 3 cut(s) | 124, 143, 253 |
| AlwI | GGATC | 1 cut(s) | 76 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 203, 235 |
| AspLEI | GCGC | 1 cut(s) | 245 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 248, 282 |
| BfmI | CTRYAG | 1 cut(s) | 215 |
| BfoI | RGCGCY | 1 cut(s) | 246 |
| BpmI | CTGGAG | 1 cut(s) | 129 |
| BsaJI | CCNNGG | 1 cut(s) | 174 |
| Bse3DI | GCAATG | 1 cut(s) | 289 |
| BseDI | CCNNGG | 1 cut(s) | 174 |
| BseMI | GCAATG | 1 cut(s) | 289 |
| BseMII | CTCAG | 2 cut(s) | 150, 167 |
| Bsh1236I | CGCG | 1 cut(s) | 270 |
| Bsp143I | GATC | 1 cut(s) | 81 |
| Bsp68I | TCGCGA | 1 cut(s) | 270 |
| BspCNI | CTCAG | 2 cut(s) | 151, 166 |
| BspFNI | CGCG | 1 cut(s) | 270 |
| BspHI | TCATGA | 1 cut(s) | 189 |
| BspPI | GGATC | 1 cut(s) | 76 |
| BsrDI | GCAATG | 1 cut(s) | 289 |
| BssECI | CCNNGG | 1 cut(s) | 174 |
| BssMI | GATC | 1 cut(s) | 81 |
| BssT1I | CCWWGG | 1 cut(s) | 174 |
| Bst4CI | ACNGT | 1 cut(s) | 219 |
| BstC8I | GCNNGC | 1 cut(s) | 46 |
| BstDEI | CTNAG | 2 cut(s) | 153, 159 |
| BstFNI | CGCG | 1 cut(s) | 270 |
| BstH2I | RGCGCY | 1 cut(s) | 246 |
| BstHHI | GCGC | 1 cut(s) | 245 |
| BstKTI | GATC | 1 cut(s) | 84 |
| BstMBI | GATC | 1 cut(s) | 81 |
| BstNSI | RCATGY | 1 cut(s) | 263 |
| BstSFI | CTRYAG | 1 cut(s) | 215 |
| BstUI | CGCG | 1 cut(s) | 270 |
| BstX2I | RGATCY | 1 cut(s) | 81 |
| BstYI | RGATCY | 1 cut(s) | 81 |
| BtsIMutI | CAGTG | 1 cut(s) | 69 |
| BtuMI | TCGCGA | 1 cut(s) | 270 |
| Cac8I | GCNNGC | 1 cut(s) | 46 |
| CciI | TCATGA | 1 cut(s) | 189 |
| CfoI | GCGC | 1 cut(s) | 245 |
| Csp6I | GTAC | 1 cut(s) | 55 |
| CviAII | CATG | 4 cut(s) | 10, 190, 202, 260 |
| CviJI | RGCY | 3 cut(s) | 124, 143, 253 |
| CviKI_1 | RGCY | 3 cut(s) | 124, 143, 253 |
| CviQI | GTAC | 1 cut(s) | 55 |
| DdeI | CTNAG | 2 cut(s) | 153, 159 |
| DpnI | GATC | 1 cut(s) | 83 |
| DpnII | GATC | 1 cut(s) | 81 |
| Eco130I | CCWWGG | 1 cut(s) | 174 |
| EcoT14I | CCWWGG | 1 cut(s) | 174 |
| ErhI | CCWWGG | 1 cut(s) | 174 |
| FaeI | CATG | 4 cut(s) | 13, 193, 205, 263 |
| FatI | CATG | 4 cut(s) | 9, 189, 201, 259 |
| GlaI | GCGC | 1 cut(s) | 244 |
| GsuI | CTGGAG | 1 cut(s) | 129 |
| HaeII | RGCGCY | 1 cut(s) | 246 |
| HhaI | GCGC | 1 cut(s) | 245 |
| Hin1II | CATG | 4 cut(s) | 13, 193, 205, 263 |
| Hin6I | GCGC | 1 cut(s) | 243 |
| HinP1I | GCGC | 1 cut(s) | 243 |
| HindIII | AAGCTT | 1 cut(s) | 251 |
| HinfI | GANTC | 1 cut(s) | 293 |
| Hpy188I | TCNGA | 2 cut(s) | 156, 306 |
| Hpy188III | TCNNGA | 4 cut(s) | 79, 146, 190, 269 |
| HpyAV | CCTTC | 1 cut(s) | 196 |
| HpyCH4III | ACNGT | 1 cut(s) | 219 |
| HpyCH4IV | ACGT | 1 cut(s) | 196 |
| HpyCH4V | TGCA | 2 cut(s) | 44, 109 |
| HpyF3I | CTNAG | 2 cut(s) | 153, 159 |
| HpySE526I | ACGT | 1 cut(s) | 196 |
| Hsp92II | CATG | 4 cut(s) | 13, 193, 205, 263 |
| HspAI | GCGC | 1 cut(s) | 243 |
| Kzo9I | GATC | 1 cut(s) | 81 |
| LmnI | GCTCC | 1 cut(s) | 148 |
| LpnPI | CCDG | 2 cut(s) | 30, 159 |
| MaeII | ACGT | 1 cut(s) | 196 |
| MaeIII | GTNAC | 4 cut(s) | 67, 197, 209, 290 |
| MalI | GATC | 1 cut(s) | 83 |
| MboI | GATC | 1 cut(s) | 81 |
| MflI | RGATCY | 1 cut(s) | 81 |
| MluCI | AATT | 2 cut(s) | 60, 169 |
| MlyI | GAGTC | 1 cut(s) | 287 |
| MnlI | CCTC | 2 cut(s) | 162, 229 |
| MseI | TTAA | 1 cut(s) | 59 |
| MvnI | CGCG | 1 cut(s) | 270 |
| NdeII | GATC | 1 cut(s) | 81 |
| NlaIII | CATG | 4 cut(s) | 13, 193, 205, 263 |
| NmuCI | GTSAC | 4 cut(s) | 67, 197, 209, 290 |
| NruI | TCGCGA | 1 cut(s) | 270 |
| NspI | RCATGY | 1 cut(s) | 263 |
| PagI | TCATGA | 1 cut(s) | 189 |
| PleI | GAGTC | 1 cut(s) | 287 |
| PpsI | GAGTC | 1 cut(s) | 287 |
| PsuI | RGATCY | 1 cut(s) | 81 |
| RruI | TCGCGA | 1 cut(s) | 270 |
| RsaI | GTAC | 1 cut(s) | 56 |
| RsaNI | GTAC | 1 cut(s) | 55 |
| SaqAI | TTAA | 1 cut(s) | 59 |
| Sau3AI | GATC | 1 cut(s) | 81 |
| SchI | GAGTC | 1 cut(s) | 287 |
| SetI | ASST | 8 cut(s) | 56, 90, 126, 145, 154, 199, 216, 255 |
| SfcI | CTRYAG | 1 cut(s) | 215 |
| Sse9I | AATT | 2 cut(s) | 60, 169 |
| StyI | CCWWGG | 1 cut(s) | 174 |
| TaaI | ACNGT | 1 cut(s) | 219 |
| TaiI | ACGT | 1 cut(s) | 199 |
| TaqI | TCGA | 2 cut(s) | 21, 78 |
| TasI | AATT | 2 cut(s) | 60, 169 |
| Tru1I | TTAA | 1 cut(s) | 59 |
| Tru9I | TTAA | 1 cut(s) | 59 |
| TscAI | CASTG | 1 cut(s) | 76 |
| TseFI | GTSAC | 4 cut(s) | 67, 197, 209, 290 |
| Tsp45I | GTSAC | 4 cut(s) | 67, 197, 209, 290 |
| TspDTI | ATGAA | 4 cut(s) | 26, 178, 206, 217 |
| TspRI | CASTG | 1 cut(s) | 76 |
| XceI | RCATGY | 1 cut(s) | 263 |