Rh6AG373800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0006963
Physical Location & Seq
Forward (+)
57251001 .. 57251534
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG373800.1

Sequence Viewer

Length: 534 bp
ATGATACGTCTCTGTGGAAAAACAATCACAGAAGACCAATTGATTGAGAAAACCCTCAATACCTTCCCCGTCTATGCTATGAGGTCCTCTGACTTATTCCAGACTCATGTAAATGCAAGACGGATCATAAGTTTCCAACAGCTTATTAAAGCTATGGTCACTGCTGAAAGACATGGAAATGAACTTGTGAAAAGAGAAATTGATAGGCTTCAAGATAGCCATCAAGAGCATCGTACTATGGCTAGAGAAAGTTGCCATCGACGTCATAATCCATACGATCAAAATGCTCAAGAAGGTAATCGCTCAAGGCGACAATCACACAACCGTAGGAGGCGTGATTTTGAGGGATGTAGGGTTGGAAACCATGGAGCCAACGTTGGCCATGGTCACCACTTTCCAATGCCACCAGTCCTAGGGACTATGCATATTGCGCCAATGCGCTTCAATCAAGGGAGAATCCTCTTTATGGTGTCTATTTCTGATATGGAACGTTTAATCAATGGACCTGAATTTGCAATGTACCTACGAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

177

Amino Acids

20.8

Weight (kDa)

10.51

Isoelectric Point (pI)

78.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 265
AclI AACGTT 2 cut(s) 375, 490
AclWI GGATC 1 cut(s) 131
AcoI YGGCCR 1 cut(s) 379
AcsI RAATTY 1 cut(s) 509
AcyI GRCGYC 1 cut(s) 262
AfaI GTAC 2 cut(s) 235, 521
AfiI CCNNNNNNNGG 2 cut(s) 413, 466
AgsI TTSAA 2 cut(s) 212, 445
AluBI AGCT 2 cut(s) 142, 152
AluI AGCT 2 cut(s) 142, 152
Alw26I GTCTC 1 cut(s) 14
AlwI GGATC 1 cut(s) 131
AoxI GGCC 1 cut(s) 379
ApoI RAATTY 1 cut(s) 509
AspA2I CCTAGG 1 cut(s) 412
AspLEI GCGC 2 cut(s) 433, 441
AspS9I GGNCC 2 cut(s) 84, 503
AsuHPI GGTGA 1 cut(s) 380
AvaII GGWCC 2 cut(s) 84, 503
AvrII CCTAGG 1 cut(s) 412
BalI TGGCCA 1 cut(s) 381
BbsI GAAGAC 1 cut(s) 39
BccI CCATC 2 cut(s) 228, 264
BcgI CGANNNNNNTGC 2 cut(s) 266, 300
BcoDI GTCTC 1 cut(s) 14
BfaI CTAG 2 cut(s) 243, 413
BlnI CCTAGG 1 cut(s) 412
Bme18I GGWCC 2 cut(s) 84, 503
BmgT120I GGNCC 2 cut(s) 84, 503
BmiI GGNNCC 1 cut(s) 370
BmsI GCATC 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 39
BpuEI CTTGAG 2 cut(s) 273, 289
BsaBI GATNNNNATC 1 cut(s) 219
BsaHI GRCGYC 1 cut(s) 262
BsaJI CCNNGG 3 cut(s) 364, 382, 412
BsaXI ACNNNNNCTCC 2 cut(s) 360, 390
Bsc4I CCNNNNNNNGG 2 cut(s) 413, 466
Bse1I ACTGG 1 cut(s) 407
Bse3DI GCAATG 1 cut(s) 522
Bse8I GATNNNNATC 1 cut(s) 219
BseDI CCNNGG 3 cut(s) 364, 382, 412
BseGI GGATG 1 cut(s) 353
BseJI GATNNNNATC 1 cut(s) 219
BseLI CCNNNNNNNGG 2 cut(s) 413, 466
BseMI GCAATG 1 cut(s) 522
BseNI ACTGG 1 cut(s) 407
BshFI GGCC 1 cut(s) 381
BslFI GGGAC 1 cut(s) 430
BslI CCNNNNNNNGG 2 cut(s) 413, 466
BsmAI GTCTC 1 cut(s) 14
BsmBI CGTCTC 1 cut(s) 14
BsmFI GGGAC 1 cut(s) 430
BsnI GGCC 1 cut(s) 381
Bsp143I GATC 2 cut(s) 123, 277
Bsp19I CCATGG 2 cut(s) 364, 382
BspANI GGCC 1 cut(s) 381
BspLI GGNNCC 1 cut(s) 370
BspPI GGATC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 522
BsrI ACTGG 1 cut(s) 407
BssECI CCNNGG 3 cut(s) 364, 382, 412
BssMI GATC 2 cut(s) 123, 277
BssNI GRCGYC 1 cut(s) 262
BssT1I CCWWGG 3 cut(s) 364, 382, 412
Bst4CI ACNGT 1 cut(s) 326
BstACI GRCGYC 1 cut(s) 262
BstDSI CCRYGG 2 cut(s) 364, 382
BstEII GGTNACC 1 cut(s) 386
BstF5I GGATG 1 cut(s) 353
BstHHI GCGC 2 cut(s) 433, 441
BstKTI GATC 2 cut(s) 126, 280
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 2 cut(s) 123, 277
BstMWI GCNNNNNNNGC 1 cut(s) 430
BstPI GGTNACC 1 cut(s) 386
BstV2I GAAGAC 1 cut(s) 39
BsuRI GGCC 1 cut(s) 381
BtgI CCRYGG 2 cut(s) 364, 382
BtsCI GGATG 1 cut(s) 353
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 159
CfoI GCGC 2 cut(s) 433, 441
Cfr13I GGNCC 2 cut(s) 84, 503
Csp6I GTAC 2 cut(s) 234, 520
CviAII CATG 4 cut(s) 107, 173, 365, 383
CviJI RGCY 7 cut(s) 142, 152, 208, 219, 242, 371, 381
CviKI_1 RGCY 7 cut(s) 142, 152, 208, 219, 242, 371, 381
CviQI GTAC 2 cut(s) 234, 520
DpnI GATC 2 cut(s) 125, 279
DpnII GATC 2 cut(s) 123, 277
EaeI YGGCCR 1 cut(s) 379
Eco130I CCWWGG 3 cut(s) 364, 382, 412
Eco47I GGWCC 2 cut(s) 84, 503
Eco91I GGTNACC 1 cut(s) 386
EcoO109I RGGNCCY 1 cut(s) 84
EcoO65I GGTNACC 1 cut(s) 386
EcoT14I CCWWGG 3 cut(s) 364, 382, 412
EcoT22I ATGCAT 1 cut(s) 426
ErhI CCWWGG 3 cut(s) 364, 382, 412
Esp3I CGTCTC 1 cut(s) 14
FaeI CATG 4 cut(s) 110, 176, 368, 386
FaqI GGGAC 1 cut(s) 430
FatI CATG 4 cut(s) 106, 172, 364, 382
FokI GGATG 1 cut(s) 360
FspBI CTAG 2 cut(s) 243, 413
GlaI GCGC 2 cut(s) 432, 440
HaeIII GGCC 1 cut(s) 381
HhaI GCGC 2 cut(s) 433, 441
Hin1I GRCGYC 1 cut(s) 262
Hin1II CATG 4 cut(s) 110, 176, 368, 386
Hin6I GCGC 2 cut(s) 431, 439
HinP1I GCGC 2 cut(s) 431, 439
HinfI GANTC 2 cut(s) 103, 456
HphI GGTGA 1 cut(s) 380
Hpy188I TCNGA 2 cut(s) 91, 481
Hpy188III TCNNGA 4 cut(s) 100, 212, 224, 290
Hpy99I CGWCG 1 cut(s) 264
HpyAV CCTTC 3 cut(s) 73, 287, 522
HpyCH4III ACNGT 1 cut(s) 326
HpyCH4IV ACGT 4 cut(s) 7, 262, 375, 490
HpyCH4V TGCA 3 cut(s) 116, 424, 515
HpyF10VI GCNNNNNNNGC 1 cut(s) 430
HpySE526I ACGT 4 cut(s) 7, 262, 375, 490
Hsp92I GRCGYC 1 cut(s) 262
Hsp92II CATG 4 cut(s) 110, 176, 368, 386
HspAI GCGC 2 cut(s) 431, 439
Kzo9I GATC 2 cut(s) 123, 277
LmnI GCTCC 1 cut(s) 368
LpnPI CCDG 3 cut(s) 113, 420, 519
LweI GCATC 1 cut(s) 238
MaeI CTAG 2 cut(s) 243, 413
MaeII ACGT 4 cut(s) 7, 262, 375, 490
MaeIII GTNAC 2 cut(s) 157, 386
MalI GATC 2 cut(s) 125, 279
MboI GATC 2 cut(s) 123, 277
MboII GAAGA 1 cut(s) 44
MfeI CAATTG 1 cut(s) 38
MlsI TGGCCA 1 cut(s) 381
MluCI AATT 3 cut(s) 38, 198, 509
MluNI TGGCCA 1 cut(s) 381
MlyI GAGTC 1 cut(s) 97
MmeI TCCRAC 2 cut(s) 160, 337
MnlI CCTC 6 cut(s) 65, 75, 97, 324, 337, 470
Mox20I TGGCCA 1 cut(s) 381
Mph1103I ATGCAT 1 cut(s) 426
MscI TGGCCA 1 cut(s) 381
MseI TTAA 2 cut(s) 147, 494
MslI CAYNNNNRTG 2 cut(s) 111, 177
Msp20I TGGCCA 1 cut(s) 381
MunI CAATTG 1 cut(s) 38
MwoI GCNNNNNNNGC 1 cut(s) 430
NcoI CCATGG 2 cut(s) 364, 382
NdeII GATC 2 cut(s) 123, 277
NlaIII CATG 4 cut(s) 110, 176, 368, 386
NlaIV GGNNCC 1 cut(s) 370
NmuCI GTSAC 2 cut(s) 157, 386
NsiI ATGCAT 1 cut(s) 426
PcsI WCGNNNNNNNCGW 1 cut(s) 307
PfeI GAWTC 1 cut(s) 456
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PpuMI RGGWCCY 1 cut(s) 84
Psp1406I AACGTT 2 cut(s) 375, 490
Psp5II RGGWCCY 1 cut(s) 84
PspEI GGTNACC 1 cut(s) 386
PspN4I GGNNCC 1 cut(s) 370
PspPI GGNCC 2 cut(s) 84, 503
PspPPI RGGWCCY 1 cut(s) 84
RsaI GTAC 2 cut(s) 235, 521
RsaNI GTAC 2 cut(s) 234, 520
RseI CAYNNNNRTG 2 cut(s) 111, 177
SaqAI TTAA 2 cut(s) 147, 494
Sau3AI GATC 2 cut(s) 123, 277
Sau96I GGNCC 2 cut(s) 84, 503
SchI GAGTC 1 cut(s) 97
SfaNI GCATC 1 cut(s) 238
SinI GGWCC 2 cut(s) 84, 503
SmiMI CAYNNNNRTG 2 cut(s) 111, 177
SmlI CTYRAG 2 cut(s) 288, 304
SmoI CTYRAG 2 cut(s) 288, 304
Sse9I AATT 3 cut(s) 38, 198, 509
SspMI CTAG 2 cut(s) 243, 413
StyI CCWWGG 3 cut(s) 364, 382, 412
TaaI ACNGT 1 cut(s) 326
TaiI ACGT 4 cut(s) 10, 265, 378, 493
TaqI TCGA 1 cut(s) 259
TasI AATT 3 cut(s) 38, 198, 509
TfiI GAWTC 1 cut(s) 456
Tru1I TTAA 2 cut(s) 147, 494
Tru9I TTAA 2 cut(s) 147, 494
TscAI CASTG 1 cut(s) 166
TseFI GTSAC 2 cut(s) 157, 386
Tsp45I GTSAC 2 cut(s) 157, 386
TspDTI ATGAA 1 cut(s) 195
TspGWI ACGGA 1 cut(s) 136
TspRI CASTG 1 cut(s) 166
VpaK11BI GGWCC 2 cut(s) 84, 503
XapI RAATTY 1 cut(s) 509
XmaJI CCTAGG 1 cut(s) 412
XspI CTAG 2 cut(s) 243, 413
ZraI GACGTC 1 cut(s) 263
Zsp2I ATGCAT 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.