Rh5BG195600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0006963
Physical Location & Seq
Forward (+)
21671063 .. 21671989
927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG195600.1

Sequence Viewer

Length: 927 bp
ATGTCAAACACGAACAAACTCGATTTTGTTCCATTGGATTATGCAGGCAAAGGATATTTAGACTGGGCCATTGACATTGAGACCCATCTTACTGCCCAAGATTTATTGCATACAATCCAAGAGCTTTGTCCTATAGAAACAGCTCCAGACCCTCAAACTAAAAAAGATAATTCCAAGGCACTTGCCTTCATGAAACATCACATGGATAGTGACCTACAGTTTGAGTTCATAAATGAGGATAGCGCCATAAAGCTTTGGCAAGCCTTTCGTGAACGATATGGCAATGTTCGTGACTCCATCCTTCCGAATTTAGAAGTAGAATGGAATGATCTTCGCTTCTCTGAATTTGACACGGTCATGCAATTTTATTCGGAATCCCACCGCATCAAAACAACGATGCGTCTCTGTGGAAAAACAATCACAGAAGACCAATTGATTGAGAAAACCCTCAATACCTTCCCCATCCATGCTATGAGGTCCTCTAATTTATTTCAGACTCATGTATTTGCTAGACGGATCACAAGTTTTCAACAACTTATTGAAGCTATGGCCACTGCTGCAAGACATGGCAACGAGCTTGTGAAAAGAGAAACTGATAGGCTTCTAGATAGCCATCAAGAGCATCGTCCTATGGCTAGAGAAAGTCGCCATCGACGTCATGATCCATACCATCGAAATGCTCAAGAAGGTAATCGCTCAAGGCGACAATCACACTACCATAGGAGGCGTGCTTTTGAGGGACGTAGGGTTGGGAACCATGGAGCCAACGTTGGCCATGGGCACCACTTTCCAACGCCACCAGTCCTAGGGACTATGTACATTGCGCCAATGCACCTCAATCAAGGGAGAATCCTCTTTATGGTGTCTATTTCTGATATGGAACATCTGATCAATGGACCTGAATTTGCAATGTATCTACGAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

308

Amino Acids

36.04

Weight (kDa)

7.4

Isoelectric Point (pI)

59.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 27 - 154 1e-07 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 658
AccB1I GGYRCC 1 cut(s) 780
AciI CCGC 1 cut(s) 382
AclI AACGTT 1 cut(s) 768
AclWI GGATC 2 cut(s) 524, 656
AcoI YGGCCR 2 cut(s) 549, 772
AcsI RAATTY 3 cut(s) 307, 344, 902
AcyI GRCGYC 1 cut(s) 655
AfaI GTAC 1 cut(s) 818
AfiI CCNNNNNNNGG 2 cut(s) 806, 859
AgsI TTSAA 2 cut(s) 530, 542
AluBI AGCT 5 cut(s) 124, 143, 253, 545, 577
AluI AGCT 5 cut(s) 124, 143, 253, 545, 577
Alw26I GTCTC 2 cut(s) 74, 407
AlwI GGATC 2 cut(s) 524, 656
AoxI GGCC 3 cut(s) 66, 549, 772
ApeKI GCWGC 1 cut(s) 557
ApoI RAATTY 3 cut(s) 307, 344, 902
ArsI GACNNNNNNTTYG 2 cut(s) 203, 235
AspA2I CCTAGG 1 cut(s) 805
AspLEI GCGC 2 cut(s) 245, 826
AspS9I GGNCC 3 cut(s) 66, 477, 896
AvaII GGWCC 2 cut(s) 477, 896
AvrII CCTAGG 1 cut(s) 805
BaeGI GKGCMC 1 cut(s) 783
BalI TGGCCA 2 cut(s) 551, 774
BanI GGYRCC 1 cut(s) 780
BbsI GAAGAC 1 cut(s) 432
BbvI GCAGC 1 cut(s) 544
BccI CCATC 6 cut(s) 93, 305, 470, 621, 657, 678
BcgI CGANNNNNNTGC 2 cut(s) 248, 282
BclI TGATCA 1 cut(s) 888
BcoDI GTCTC 2 cut(s) 74, 407
BfaI CTAG 4 cut(s) 510, 605, 636, 806
BfmI CTRYAG 2 cut(s) 132, 215
BfoI RGCGCY 1 cut(s) 246
BisI GCNGC 1 cut(s) 558
BlnI CCTAGG 1 cut(s) 805
BlsI GCNGC 1 cut(s) 559
Bme18I GGWCC 2 cut(s) 477, 896
BmgT120I GGNCC 3 cut(s) 66, 477, 896
BmiI GGNNCC 3 cut(s) 755, 763, 782
BmrI ACTGGG 1 cut(s) 73
BmsI GCATC 3 cut(s) 387, 393, 631
BmuI ACTGGG 1 cut(s) 73
BpiI GAAGAC 1 cut(s) 432
BpmI CTGGAG 1 cut(s) 129
BpuEI CTTGAG 2 cut(s) 666, 682
BsaBI GATNNNNATC 1 cut(s) 612
BsaHI GRCGYC 1 cut(s) 655
BsaI GGTCTC 1 cut(s) 74
BsaJI CCNNGG 4 cut(s) 174, 757, 775, 805
BsaXI ACNNNNNCTCC 2 cut(s) 753, 783
Bsc4I CCNNNNNNNGG 2 cut(s) 806, 859
Bse1I ACTGG 2 cut(s) 68, 800
Bse3DI GCAATG 3 cut(s) 289, 819, 915
Bse8I GATNNNNATC 1 cut(s) 612
BseDI CCNNGG 4 cut(s) 174, 757, 775, 805
BseGI GGATG 2 cut(s) 297, 462
BseJI GATNNNNATC 1 cut(s) 612
BseLI CCNNNNNNNGG 2 cut(s) 806, 859
BseMI GCAATG 3 cut(s) 289, 819, 915
BseNI ACTGG 2 cut(s) 68, 800
BseSI GKGCMC 1 cut(s) 783
BseXI GCAGC 1 cut(s) 544
BshFI GGCC 3 cut(s) 68, 551, 774
BshNI GGYRCC 1 cut(s) 780
BslFI GGGAC 2 cut(s) 753, 823
BslI CCNNNNNNNGG 2 cut(s) 806, 859
BsmAI GTCTC 2 cut(s) 74, 407
BsmBI CGTCTC 1 cut(s) 407
BsmFI GGGAC 2 cut(s) 753, 823
BsnI GGCC 3 cut(s) 68, 551, 774
Bso31I GGTCTC 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 783
Bsp1407I TGTACA 1 cut(s) 816
Bsp143I GATC 4 cut(s) 328, 516, 661, 888
Bsp19I CCATGG 2 cut(s) 757, 775
BspACI CCGC 1 cut(s) 382
BspANI GGCC 3 cut(s) 68, 551, 774
BspHI TCATGA 2 cut(s) 189, 658
BspLI GGNNCC 3 cut(s) 755, 763, 782
BspPI GGATC 2 cut(s) 524, 656
BspT107I GGYRCC 1 cut(s) 780
BspTNI GGTCTC 1 cut(s) 74
BsrDI GCAATG 3 cut(s) 289, 819, 915
BsrGI TGTACA 1 cut(s) 816
BsrI ACTGG 2 cut(s) 68, 800
BssECI CCNNGG 4 cut(s) 174, 757, 775, 805
BssMI GATC 4 cut(s) 328, 516, 661, 888
BssNI GRCGYC 1 cut(s) 655
BssT1I CCWWGG 4 cut(s) 174, 757, 775, 805
Bst4CI ACNGT 2 cut(s) 219, 355
BstACI GRCGYC 1 cut(s) 655
BstAUI TGTACA 1 cut(s) 816
BstC8I GCNNGC 3 cut(s) 46, 261, 729
BstDSI CCRYGG 2 cut(s) 757, 775
BstF5I GGATG 2 cut(s) 297, 462
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 2 cut(s) 245, 826
BstKTI GATC 4 cut(s) 331, 519, 664, 891
BstMAI GTCTC 2 cut(s) 74, 407
BstMBI GATC 4 cut(s) 328, 516, 661, 888
BstMWI GCNNNNNNNGC 1 cut(s) 557
BstSFI CTRYAG 2 cut(s) 132, 215
BstSLI GKGCMC 1 cut(s) 783
BstV1I GCAGC 1 cut(s) 544
BstV2I GAAGAC 1 cut(s) 432
BsuRI GGCC 3 cut(s) 68, 551, 774
BtgI CCRYGG 2 cut(s) 757, 775
BtsCI GGATG 2 cut(s) 297, 462
BtsI GCAGTG 1 cut(s) 552
BtsIMutI CAGTG 1 cut(s) 552
Cac8I GCNNGC 3 cut(s) 46, 261, 729
CciI TCATGA 2 cut(s) 189, 658
CfoI GCGC 2 cut(s) 245, 826
Cfr13I GGNCC 3 cut(s) 66, 477, 896
CseI GACGC 1 cut(s) 389
Csp6I GTAC 1 cut(s) 817
CviAII CATG 9 cut(s) 190, 202, 358, 467, 500, 566, 659, 758, 776
CviQI GTAC 1 cut(s) 817
DpnI GATC 4 cut(s) 330, 518, 663, 890
DpnII GATC 4 cut(s) 328, 516, 661, 888
EaeI YGGCCR 2 cut(s) 549, 772
Eco130I CCWWGG 4 cut(s) 174, 757, 775, 805
Eco31I GGTCTC 1 cut(s) 74
Eco47I GGWCC 2 cut(s) 477, 896
EcoO109I RGGNCCY 1 cut(s) 477
EcoT14I CCWWGG 4 cut(s) 174, 757, 775, 805
ErhI CCWWGG 4 cut(s) 174, 757, 775, 805
Esp3I CGTCTC 1 cut(s) 407
FaeI CATG 9 cut(s) 193, 205, 361, 470, 503, 569, 662, 761, 779
FaqI GGGAC 2 cut(s) 753, 823
FatI CATG 9 cut(s) 189, 201, 357, 466, 499, 565, 658, 757, 775
FbaI TGATCA 1 cut(s) 888
Fnu4HI GCNGC 1 cut(s) 558
FokI GGATG 2 cut(s) 284, 449
Fsp4HI GCNGC 1 cut(s) 558
FspBI CTAG 4 cut(s) 510, 605, 636, 806
GlaI GCGC 2 cut(s) 244, 825
GluI GCNGC 1 cut(s) 558
GsuI CTGGAG 1 cut(s) 129
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 3 cut(s) 68, 551, 774
HgaI GACGC 1 cut(s) 389
HhaI GCGC 2 cut(s) 245, 826
Hin1I GRCGYC 1 cut(s) 655
Hin1II CATG 9 cut(s) 193, 205, 361, 470, 503, 569, 662, 761, 779
Hin6I GCGC 2 cut(s) 243, 824
HinP1I GCGC 2 cut(s) 243, 824
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 4 cut(s) 293, 374, 496, 849
Hpy166II GTNNAC 1 cut(s) 272
Hpy188I TCNGA 6 cut(s) 306, 343, 373, 495, 874, 888
Hpy188III TCNNGA 8 cut(s) 146, 190, 269, 290, 605, 617, 659, 683
Hpy8I GTNNAC 1 cut(s) 272
Hpy99I CGWCG 1 cut(s) 657
HpyAV CCTTC 4 cut(s) 196, 311, 466, 680
HpyCH4III ACNGT 2 cut(s) 219, 355
HpyCH4IV ACGT 3 cut(s) 655, 742, 768
HpyCH4V TGCA 6 cut(s) 44, 109, 361, 560, 832, 908
HpyF10VI GCNNNNNNNGC 1 cut(s) 557
HpySE526I ACGT 3 cut(s) 655, 742, 768
Hsp92I GRCGYC 1 cut(s) 655
Hsp92II CATG 9 cut(s) 193, 205, 361, 470, 503, 569, 662, 761, 779
HspAI GCGC 2 cut(s) 243, 824
Ksp22I TGATCA 1 cut(s) 888
Kzo9I GATC 4 cut(s) 328, 516, 661, 888
LmnI GCTCC 2 cut(s) 148, 761
LpnPI CCDG 5 cut(s) 30, 49, 159, 813, 912
Lsp1109I GCAGC 1 cut(s) 544
LweI GCATC 3 cut(s) 387, 393, 631
MaeI CTAG 4 cut(s) 510, 605, 636, 806
MaeII ACGT 3 cut(s) 655, 742, 768
MaeIII GTNAC 2 cut(s) 209, 290
MalI GATC 4 cut(s) 330, 518, 663, 890
MboI GATC 4 cut(s) 328, 516, 661, 888
MboII GAAGA 2 cut(s) 323, 437
MfeI CAATTG 1 cut(s) 431
MhlI GDGCHC 1 cut(s) 783
MlsI TGGCCA 2 cut(s) 551, 774
MluCI AATT 7 cut(s) 169, 307, 344, 362, 431, 484, 902
MluNI TGGCCA 2 cut(s) 551, 774
MlyI GAGTC 2 cut(s) 287, 490
MmeI TCCRAC 1 cut(s) 815
MnlI CCTC 9 cut(s) 162, 229, 458, 468, 490, 717, 730, 845, 863
Mox20I TGGCCA 2 cut(s) 551, 774
MscI TGGCCA 2 cut(s) 551, 774
MslI CAYNNNNRTG 2 cut(s) 356, 675
Msp20I TGGCCA 2 cut(s) 551, 774
MunI CAATTG 1 cut(s) 431
MwoI GCNNNNNNNGC 1 cut(s) 557
NcoI CCATGG 2 cut(s) 757, 775
NdeII GATC 4 cut(s) 328, 516, 661, 888
NlaIII CATG 9 cut(s) 193, 205, 361, 470, 503, 569, 662, 761, 779
NlaIV GGNNCC 3 cut(s) 755, 763, 782
NmuCI GTSAC 2 cut(s) 209, 290
PagI TCATGA 2 cut(s) 189, 658
PcsI WCGNNNNNNNCGW 2 cut(s) 652, 700
PfeI GAWTC 2 cut(s) 374, 849
PflFI GACNNNGTC 1 cut(s) 353
PkrI GCNGC 1 cut(s) 559
PleI GAGTC 2 cut(s) 287, 490
PpsI GAGTC 2 cut(s) 287, 490
PpuMI RGGWCCY 1 cut(s) 477
Psp1406I AACGTT 1 cut(s) 768
Psp5II RGGWCCY 1 cut(s) 477
PspN4I GGNNCC 3 cut(s) 755, 763, 782
PspPI GGNCC 3 cut(s) 66, 477, 896
PspPPI RGGWCCY 1 cut(s) 477
PsyI GACNNNGTC 1 cut(s) 353
RsaI GTAC 1 cut(s) 818
RsaNI GTAC 1 cut(s) 817
RseI CAYNNNNRTG 2 cut(s) 356, 675
SatI GCNGC 1 cut(s) 558
Sau3AI GATC 4 cut(s) 328, 516, 661, 888
Sau96I GGNCC 3 cut(s) 66, 477, 896
SchI GAGTC 2 cut(s) 287, 490
SduI GDGCHC 1 cut(s) 783
SfaNI GCATC 3 cut(s) 387, 393, 631
SfcI CTRYAG 2 cut(s) 132, 215
SinI GGWCC 2 cut(s) 477, 896
SmiMI CAYNNNNRTG 2 cut(s) 356, 675
SmlI CTYRAG 2 cut(s) 681, 697
SmoI CTYRAG 2 cut(s) 681, 697
Sse9I AATT 7 cut(s) 169, 307, 344, 362, 431, 484, 902
SsiI CCGC 1 cut(s) 382
SspMI CTAG 4 cut(s) 510, 605, 636, 806
StyI CCWWGG 4 cut(s) 174, 757, 775, 805
TaaI ACNGT 2 cut(s) 219, 355
TaiI ACGT 3 cut(s) 658, 745, 771
TaqI TCGA 3 cut(s) 21, 652, 673
TasI AATT 7 cut(s) 169, 307, 344, 362, 431, 484, 902
TatI WGTACW 1 cut(s) 816
TfiI GAWTC 2 cut(s) 374, 849
TscAI CASTG 1 cut(s) 559
TseFI GTSAC 2 cut(s) 209, 290
TseI GCWGC 1 cut(s) 557
Tsp45I GTSAC 2 cut(s) 209, 290
TspDTI ATGAA 3 cut(s) 178, 206, 217
TspGWI ACGGA 1 cut(s) 529
TspRI CASTG 1 cut(s) 559
Tth111I GACNNNGTC 1 cut(s) 353
VpaK11BI GGWCC 2 cut(s) 477, 896
XapI RAATTY 3 cut(s) 307, 344, 902
XbaI TCTAGA 1 cut(s) 604
XmaJI CCTAGG 1 cut(s) 805
XspI CTAG 4 cut(s) 510, 605, 636, 806
ZraI GACGTC 1 cut(s) 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.