Rh6DG133200

WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0006963
Physical Location & Seq
Forward (+)
19016018 .. 19036581
20564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG133200.1

Sequence Viewer

Length: 1410 bp
ATGGACCATGCTCACACTGGACAGATCATTTTCTGTGGAGATGGGACGGAGTATTATCCCGCTCTCATCGGCATTGAAGTAGCAGCAGGCAGAAGCCACCTGATGATGTGCATAGTGGCAGTCAACGTTCATCTCGTACAAGTTTTGGCTCGAGTACCAGTGATAATGACCGCCTGCGTCAATGGGTTTGGGCACATGAGCTCAGATCTGCTTGCGTATGGAGCATCAGATGGAACCTTGACAGTATGCACTGTCTCTGATCCTCCTTCAATTCTCAAGCATCTGAATGACTTTGATTTCTCGTCAAACAATCAGTACATTGCATCCTCATCGTTGGATAAAACTGTGAGAGTAAATAACAACTTCCTTTCAGTTGGCAATGTAGACAAAGAAATTACGGTTTTCAATTTCAGTACTGGGAGGACCATTCATAAAACATCATTTAACAGTCAAGTTACTGCTATGGACCATGCTCACACTGGACAGATCATTTTCTGTGGAGATGGGACGGGGTGTATATATTCTGTCAGCAAAAGGTATTTAATTTGGGTCACTGATGTCGAGATCCACCTTATTGCCCGTGATTTATTGCATACAATCCAAGAGCTTTGTCCTATAGAAACAGCTCCAGATCCTCAAACTGAGAAAGATAATTCCAAGGCACTTGCCTTCATGAAACGTCACATGGATAGTGATCTACAGTTTGAGTTCATAAATGAGGATAGCGCTATAAAGCTTTGGCAAGCGCTTCGCGAACGATATGGCAATATTCGTGACTCCATCCTTCCGAATACAGAAGCAGAATGGAACGAACTTCGCTTCTCTGAATTTGACACTGTCATGCAATTTTATTCGGAAGCTCTCAGCATCAAAGCAATGATGCGTCTCTGTGGAAAAACAATCACAGAAGACCAATTGATTGAGAAGACCCTCAATACCTTCCCCGTCTATGCTATGAGGTCCTCTGACTTATTCCGGACTCATGTAAATGCAAGACGGATCACAAGTTTTCAACAGCTTATTGAAGCTATGGCCACTACTGAAAGACATGGCAATGAACTTGTGCAAAGAAGATTTGATAGGCTTCAAGATAGCTATCAAGAGCATCATCCTATGGCTAGAGAAAGTCGCCATCGACGTCACGATCCATACGATCGAAATGCTCAAGAAGGTAATCGCTCAAGGCGACAATCCCACGACCGTAGGAGGCGTGATTTTGAGGGACATAGGGTTGGAAACCATGGAGCCAACGTTGGCCATGGGCACCACTTTCCAACGCCACCAGTCCTAGGGACTATGCATATTGCGCCAATGCGCCTCAATCAAGGGAGAATCCTCTTTATGGTGTCTATTTCTGATATGGAACGTCTGATCAATGGACCTGAATTTGCAATGTACCTACGAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

469

Amino Acids

53.5

Weight (kDa)

6.58

Isoelectric Point (pI)

50.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 188 - 315 1.8e-07 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1141
AccB1I GGYRCC 1 cut(s) 1263
AccBSI CCGCTC 1 cut(s) 62
AccI GTMKAC 1 cut(s) 384
AccII CGCG 1 cut(s) 753
AccIII TCCGGA 1 cut(s) 975
AciI CCGC 2 cut(s) 60, 171
AclI AACGTT 2 cut(s) 126, 1251
AclWI GGATC 5 cut(s) 254, 559, 626, 1007, 1139
AcoI YGGCCR 2 cut(s) 1032, 1255
AcsI RAATTY 2 cut(s) 827, 1385
AcyI GRCGYC 1 cut(s) 1138
AfaI GTAC 5 cut(s) 138, 156, 317, 415, 1397
AfeI AGCGCT 2 cut(s) 727, 747
AfiI CCNNNNNNNGG 2 cut(s) 1289, 1342
AgsI TTSAA 6 cut(s) 77, 270, 406, 1013, 1025, 1088
AluBI AGCT 8 cut(s) 201, 607, 626, 736, 860, 1018, 1028, 1095
AluI AGCT 8 cut(s) 201, 607, 626, 736, 860, 1018, 1028, 1095
Alw21I GWGCWC 1 cut(s) 203
Alw26I GTCTC 2 cut(s) 259, 890
AlwI GGATC 5 cut(s) 254, 559, 626, 1007, 1139
Ama87I CYCGRG 1 cut(s) 150
Aor13HI TCCGGA 1 cut(s) 975
Aor51HI AGCGCT 2 cut(s) 727, 747
AoxI GGCC 2 cut(s) 1032, 1255
ApeKI GCWGC 1 cut(s) 83
ApoI RAATTY 2 cut(s) 827, 1385
AspA2I CCTAGG 1 cut(s) 1288
AspLEI GCGC 4 cut(s) 728, 748, 1309, 1317
AspS9I GGNCC 5 cut(s) 4, 423, 466, 960, 1379
AvaI CYCGRG 1 cut(s) 150
AvaII GGWCC 5 cut(s) 4, 423, 466, 960, 1379
AvrII CCTAGG 1 cut(s) 1288
BaeGI GKGCMC 2 cut(s) 195, 1266
BalI TGGCCA 2 cut(s) 1034, 1257
BanI GGYRCC 1 cut(s) 1263
BanII GRGCYC 1 cut(s) 203
BbsI GAAGAC 2 cut(s) 915, 932
Bbv12I GWGCWC 1 cut(s) 203
BbvI GCAGC 1 cut(s) 95
BccI CCATC 5 cut(s) 35, 224, 497, 788, 1140
BcgI CGANNNNNNTGC 6 cut(s) 312, 346, 731, 765, 1142, 1176
BclI TGATCA 1 cut(s) 1371
BcoDI GTCTC 2 cut(s) 259, 890
BfaI CTAG 2 cut(s) 1119, 1289
BfmI CTRYAG 2 cut(s) 615, 698
BfoI RGCGCY 2 cut(s) 729, 749
BglII AGATCT 1 cut(s) 205
BisI GCNGC 1 cut(s) 84
BlnI CCTAGG 1 cut(s) 1288
BlsI GCNGC 1 cut(s) 85
BmcAI AGTACT 1 cut(s) 415
Bme18I GGWCC 5 cut(s) 4, 423, 466, 960, 1379
BmeT110I CYCGRG 1 cut(s) 150
BmgT120I GGNCC 5 cut(s) 4, 423, 466, 960, 1379
BmiI GGNNCC 3 cut(s) 235, 1246, 1265
BmrI ACTGGG 1 cut(s) 426
BmsI GCATC 6 cut(s) 233, 289, 332, 870, 876, 1114
BmuI ACTGGG 1 cut(s) 426
BpiI GAAGAC 2 cut(s) 915, 932
BpmI CTGGAG 1 cut(s) 612
BpuEI CTTGAG 3 cut(s) 260, 1149, 1165
BsaBI GATNNNNATC 2 cut(s) 693, 1095
BsaHI GRCGYC 1 cut(s) 1138
BsaJI CCNNGG 4 cut(s) 657, 1240, 1258, 1288
BsaWI WCCGGW 1 cut(s) 975
BsaXI ACNNNNNCTCC 2 cut(s) 1236, 1266
Bsc4I CCNNNNNNNGG 2 cut(s) 1289, 1342
Bse1I ACTGG 5 cut(s) 22, 158, 421, 484, 1283
Bse3DI GCAATG 5 cut(s) 318, 385, 882, 1060, 1398
Bse8I GATNNNNATC 2 cut(s) 693, 1095
BseAI TCCGGA 1 cut(s) 975
BseDI CCNNGG 4 cut(s) 657, 1240, 1258, 1288
BseGI GGATG 3 cut(s) 323, 780, 1108
BseJI GATNNNNATC 2 cut(s) 693, 1095
BseLI CCNNNNNNNGG 2 cut(s) 1289, 1342
BseMI GCAATG 5 cut(s) 318, 385, 882, 1060, 1398
BseMII CTCAG 3 cut(s) 216, 633, 877
BseNI ACTGG 5 cut(s) 22, 158, 421, 484, 1283
BseSI GKGCMC 2 cut(s) 195, 1266
BseXI GCAGC 1 cut(s) 95
Bsh1236I CGCG 1 cut(s) 753
Bsh1285I CGRYCG 2 cut(s) 1156, 1201
BshFI GGCC 2 cut(s) 1034, 1257
BshNI GGYRCC 1 cut(s) 1263
BsiEI CGRYCG 2 cut(s) 1156, 1201
BsiHKAI GWGCWC 1 cut(s) 203
BsiHKCI CYCGRG 1 cut(s) 150
BsiSI CCGG 1 cut(s) 976
BslFI GGGAC 4 cut(s) 58, 520, 1236, 1306
BslI CCNNNNNNNGG 2 cut(s) 1289, 1342
BsmAI GTCTC 2 cut(s) 259, 890
BsmBI CGTCTC 1 cut(s) 890
BsmFI GGGAC 4 cut(s) 58, 520, 1236, 1306
BsnI GGCC 2 cut(s) 1034, 1257
BsoBI CYCGRG 1 cut(s) 150
Bsp1286I GDGCHC 3 cut(s) 195, 203, 1266
Bsp13I TCCGGA 1 cut(s) 975
Bsp19I CCATGG 2 cut(s) 1240, 1258
Bsp68I TCGCGA 1 cut(s) 753
BspACI CCGC 2 cut(s) 60, 171
BspANI GGCC 2 cut(s) 1034, 1257
BspCNI CTCAG 3 cut(s) 215, 634, 876
BspEI TCCGGA 1 cut(s) 975
BspFNI CGCG 1 cut(s) 753
BspHI TCATGA 1 cut(s) 672
BspLI GGNNCC 3 cut(s) 235, 1246, 1265
BspPI GGATC 5 cut(s) 254, 559, 626, 1007, 1139
BspT107I GGYRCC 1 cut(s) 1263
BsrBI CCGCTC 1 cut(s) 62
BsrDI GCAATG 5 cut(s) 318, 385, 882, 1060, 1398
BsrI ACTGG 5 cut(s) 22, 158, 421, 484, 1283
BssECI CCNNGG 4 cut(s) 657, 1240, 1258, 1288
BssNI GRCGYC 1 cut(s) 1138
BssT1I CCWWGG 4 cut(s) 657, 1240, 1258, 1288
Bst4CI ACNGT 8 cut(s) 244, 253, 346, 400, 449, 702, 838, 1202
BstACI GRCGYC 1 cut(s) 1138
BstC8I GCNNGC 4 cut(s) 88, 175, 213, 744
BstDEI CTNAG 3 cut(s) 202, 642, 863
BstDSI CCRYGG 2 cut(s) 1240, 1258
BstF5I GGATG 3 cut(s) 323, 780, 1108
BstFNI CGCG 1 cut(s) 753
BstH2I RGCGCY 2 cut(s) 729, 749
BstHHI GCGC 4 cut(s) 728, 748, 1309, 1317
BstMAI GTCTC 2 cut(s) 259, 890
BstMCI CGRYCG 2 cut(s) 1156, 1201
BstMWI GCNNNNNNNGC 2 cut(s) 221, 1306
BstSFI CTRYAG 2 cut(s) 615, 698
BstSLI GKGCMC 2 cut(s) 195, 1266
BstUI CGCG 1 cut(s) 753
BstV1I GCAGC 1 cut(s) 95
BstV2I GAAGAC 2 cut(s) 915, 932
BstX2I RGATCY 3 cut(s) 205, 564, 631
BstYI RGATCY 3 cut(s) 205, 564, 631
BsuRI GGCC 2 cut(s) 1034, 1257
BtgI CCRYGG 2 cut(s) 1240, 1258
BtsCI GGATG 3 cut(s) 323, 780, 1108
BtsIMutI CAGTG 6 cut(s) 15, 165, 249, 477, 552, 834
BtuMI TCGCGA 1 cut(s) 753
Cac8I GCNNGC 4 cut(s) 88, 175, 213, 744
CciI TCATGA 1 cut(s) 672
CfoI GCGC 4 cut(s) 728, 748, 1309, 1317
Cfr13I GGNCC 5 cut(s) 4, 423, 466, 960, 1379
CseI GACGC 2 cut(s) 166, 872
Csp6I GTAC 5 cut(s) 137, 155, 316, 414, 1396
CviQI GTAC 5 cut(s) 137, 155, 316, 414, 1396
DdeI CTNAG 3 cut(s) 202, 642, 863
EaeI YGGCCR 2 cut(s) 1032, 1255
Ecl136II GAGCTC 1 cut(s) 201
Eco130I CCWWGG 4 cut(s) 657, 1240, 1258, 1288
Eco24I GRGCYC 1 cut(s) 203
Eco47I GGWCC 5 cut(s) 4, 423, 466, 960, 1379
Eco47III AGCGCT 2 cut(s) 727, 747
Eco53kI GAGCTC 1 cut(s) 201
Eco88I CYCGRG 1 cut(s) 150
EcoICRI GAGCTC 1 cut(s) 201
EcoO109I RGGNCCY 1 cut(s) 960
EcoT14I CCWWGG 4 cut(s) 657, 1240, 1258, 1288
EcoT22I ATGCAT 1 cut(s) 1302
EcoT38I GRGCYC 1 cut(s) 203
ErhI CCWWGG 4 cut(s) 657, 1240, 1258, 1288
Esp3I CGTCTC 1 cut(s) 890
FaqI GGGAC 4 cut(s) 58, 520, 1236, 1306
FauI CCCGC 1 cut(s) 67
FbaI TGATCA 1 cut(s) 1371
FblI GTMKAC 1 cut(s) 384
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 3 cut(s) 310, 767, 1095
FriOI GRGCYC 1 cut(s) 203
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 2 cut(s) 1119, 1289
GlaI GCGC 4 cut(s) 727, 747, 1308, 1316
GluI GCNGC 1 cut(s) 84
GsuI CTGGAG 1 cut(s) 612
HaeII RGCGCY 2 cut(s) 729, 749
HaeIII GGCC 2 cut(s) 1034, 1257
HapII CCGG 1 cut(s) 976
HgaI GACGC 2 cut(s) 166, 872
HhaI GCGC 4 cut(s) 728, 748, 1309, 1317
Hin1I GRCGYC 1 cut(s) 1138
Hin6I GCGC 4 cut(s) 726, 746, 1307, 1315
HinP1I GCGC 4 cut(s) 726, 746, 1307, 1315
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HindIII AAGCTT 1 cut(s) 734
HinfI GANTC 3 cut(s) 776, 979, 1332
HpaII CCGG 1 cut(s) 976
Hpy166II GTNNAC 2 cut(s) 124, 385
Hpy8I GTNNAC 2 cut(s) 124, 385
Hpy99I CGWCG 1 cut(s) 1140
HpyAV CCTTC 6 cut(s) 276, 679, 794, 949, 1163, 1398
HpyCH4III ACNGT 8 cut(s) 244, 253, 346, 400, 449, 702, 838, 1202
HpyCH4IV ACGT 5 cut(s) 126, 679, 1138, 1251, 1366
HpyCH4V TGCA 9 cut(s) 111, 249, 323, 592, 844, 992, 1066, 1300, 1391
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 1306
HpyF3I CTNAG 3 cut(s) 202, 642, 863
HpySE526I ACGT 5 cut(s) 126, 679, 1138, 1251, 1366
Hsp92I GRCGYC 1 cut(s) 1138
HspAI GCGC 4 cut(s) 726, 746, 1307, 1315
Kpn2I TCCGGA 1 cut(s) 975
Ksp22I TGATCA 1 cut(s) 1371
LmnI GCTCC 3 cut(s) 221, 631, 1244
Lsp1109I GCAGC 1 cut(s) 95
LweI GCATC 6 cut(s) 233, 289, 332, 870, 876, 1114
MaeI CTAG 2 cut(s) 1119, 1289
MaeII ACGT 5 cut(s) 126, 679, 1138, 1251, 1366
MaeIII GTNAC 5 cut(s) 454, 550, 680, 773, 1139
MbiI CCGCTC 1 cut(s) 62
MboII GAAGA 3 cut(s) 920, 937, 1083
MfeI CAATTG 1 cut(s) 914
MflI RGATCY 3 cut(s) 205, 564, 631
MhlI GDGCHC 3 cut(s) 195, 203, 1266
MlsI TGGCCA 2 cut(s) 1034, 1257
MluCI AATT 9 cut(s) 270, 393, 406, 543, 652, 827, 845, 914, 1385
MluNI TGGCCA 2 cut(s) 1034, 1257
MlyI GAGTC 2 cut(s) 770, 973
MmeI TCCRAC 3 cut(s) 315, 1213, 1298
Mox20I TGGCCA 2 cut(s) 1034, 1257
Mph1103I ATGCAT 1 cut(s) 1302
MroI TCCGGA 1 cut(s) 975
MscI TGGCCA 2 cut(s) 1034, 1257
MseI TTAA 2 cut(s) 444, 542
MslI CAYNNNNRTG 4 cut(s) 285, 839, 987, 1053
Msp20I TGGCCA 2 cut(s) 1034, 1257
MspI CCGG 1 cut(s) 976
MunI CAATTG 1 cut(s) 914
MvnI CGCG 1 cut(s) 753
MwoI GCNNNNNNNGC 2 cut(s) 221, 1306
NcoI CCATGG 2 cut(s) 1240, 1258
NlaIV GGNNCC 3 cut(s) 235, 1246, 1265
NmuCI GTSAC 4 cut(s) 550, 680, 773, 1139
NruI TCGCGA 1 cut(s) 753
NsiI ATGCAT 1 cut(s) 1302
PaeR7I CTCGAG 1 cut(s) 150
PagI TCATGA 1 cut(s) 672
PcsI WCGNNNNNNNCGW 4 cut(s) 132, 1135, 1149, 1183
PfeI GAWTC 1 cut(s) 1332
PflFI GACNNNGTC 1 cut(s) 836
PkrI GCNGC 1 cut(s) 85
Ple19I CGATCG 1 cut(s) 1156
PleI GAGTC 2 cut(s) 770, 973
PpsI GAGTC 2 cut(s) 770, 973
PpuMI RGGWCCY 1 cut(s) 960
Psp124BI GAGCTC 1 cut(s) 203
Psp1406I AACGTT 2 cut(s) 126, 1251
Psp5II RGGWCCY 1 cut(s) 960
PspN4I GGNNCC 3 cut(s) 235, 1246, 1265
PspPI GGNCC 5 cut(s) 4, 423, 466, 960, 1379
PspPPI RGGWCCY 1 cut(s) 960
PspXI VCTCGAGB 1 cut(s) 150
PsuI RGATCY 3 cut(s) 205, 564, 631
PsyI GACNNNGTC 1 cut(s) 836
PvuI CGATCG 1 cut(s) 1156
RruI TCGCGA 1 cut(s) 753
RsaI GTAC 5 cut(s) 138, 156, 317, 415, 1397
RsaNI GTAC 5 cut(s) 137, 155, 316, 414, 1396
RseI CAYNNNNRTG 4 cut(s) 285, 839, 987, 1053
SacI GAGCTC 1 cut(s) 203
SaqAI TTAA 2 cut(s) 444, 542
SatI GCNGC 1 cut(s) 84
Sau96I GGNCC 5 cut(s) 4, 423, 466, 960, 1379
ScaI AGTACT 1 cut(s) 415
SchI GAGTC 2 cut(s) 770, 973
SduI GDGCHC 3 cut(s) 195, 203, 1266
SfaNI GCATC 6 cut(s) 233, 289, 332, 870, 876, 1114
SfcI CTRYAG 2 cut(s) 615, 698
Sfr274I CTCGAG 1 cut(s) 150
SinI GGWCC 5 cut(s) 4, 423, 466, 960, 1379
SlaI CTCGAG 1 cut(s) 150
SmiMI CAYNNNNRTG 4 cut(s) 285, 839, 987, 1053
SmlI CTYRAG 4 cut(s) 150, 275, 1164, 1180
SmoI CTYRAG 4 cut(s) 150, 275, 1164, 1180
Sse9I AATT 9 cut(s) 270, 393, 406, 543, 652, 827, 845, 914, 1385
SsiI CCGC 2 cut(s) 60, 171
SspI AATATT 1 cut(s) 769
SspMI CTAG 2 cut(s) 1119, 1289
SstI GAGCTC 1 cut(s) 203
StyI CCWWGG 4 cut(s) 657, 1240, 1258, 1288
TaaI ACNGT 8 cut(s) 244, 253, 346, 400, 449, 702, 838, 1202
TaiI ACGT 5 cut(s) 129, 682, 1141, 1254, 1369
TaqI TCGA 4 cut(s) 151, 561, 1135, 1156
TasI AATT 9 cut(s) 270, 393, 406, 543, 652, 827, 845, 914, 1385
TatI WGTACW 2 cut(s) 315, 413
TfiI GAWTC 1 cut(s) 1332
Tru1I TTAA 2 cut(s) 444, 542
Tru9I TTAA 2 cut(s) 444, 542
TscAI CASTG 6 cut(s) 22, 165, 256, 484, 559, 841
TseFI GTSAC 4 cut(s) 550, 680, 773, 1139
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 4 cut(s) 550, 680, 773, 1139
TspDTI ATGAA 6 cut(s) 119, 419, 661, 689, 700, 1071
TspGWI ACGGA 2 cut(s) 62, 1012
TspRI CASTG 6 cut(s) 22, 165, 256, 484, 559, 841
Tth111I GACNNNGTC 1 cut(s) 836
VpaK11BI GGWCC 5 cut(s) 4, 423, 466, 960, 1379
XapI RAATTY 2 cut(s) 827, 1385
XcmI CCANNNNNNNNNTGG 2 cut(s) 14, 476
XhoI CTCGAG 1 cut(s) 150
XmaJI CCTAGG 1 cut(s) 1288
XmiI GTMKAC 1 cut(s) 384
XspI CTAG 2 cut(s) 1119, 1289
ZraI GACGTC 1 cut(s) 1139
ZrmI AGTACT 1 cut(s) 415
Zsp2I ATGCAT 1 cut(s) 1302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.