Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0006963

Physical Location & Seq

Genomic Coordinates Forward (+)

69041752 .. 69048776

Gene Structure 7025 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG511100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2175 bp

ATGTCAAACATGAACAAACTCGATTTTGTTCCATTGGATTATGCAGGCAAAAGGTACTTAATTTGGGTCACTGATGTCGTGATCCACCTTATTGCCCGTGATTTATTGCATACAATCCAAGAGCTTTGTCCTATAGAAACAGCTCCAGACCCTCAAACTGAGAAAGATAATTTCAAGGCACTTGCCTTCATGATACGTCACATGGATAGTGACCTACAGTTTGAGTTCATAAATGAGGATAGCGCCATAAAGCTTTGGCATGCGCTTCGCGAACGATATGGCAATGTTCGTGACCCCATACTTCCGAATACAGAAGCAGAATGGAAAAATCTTCGCTTCTCTGAATTTGACACTGTCATGCAATTTTATTCGGAAGCTCTCAGCATCAGAGCAATGATGCGTCTCTGTGGAAAAACAATCACAGAAGACCAGTTGATTGAGAAAACCCTCAATACCTTCCCCGTCTGTGCTATGAGGTCCTCTGACTTACTCCGGACTCATGTAAATGCAAGACGGATCACAAGTTTTCAACAGCTTATTGAAGCTATGGCCACTACTGAAAGACATGGCAATGAACTTGTGAAAAGAAGATTTGATAGGCTTCAAGATAGCTATCAAGAGCATCGTCCTATGGCTAGAGAAAGTCGCCATCGACGTCATGATCCATACGATCGAAATGCTCAAGAAGGTAATCGCTCAAGGCGACAATCCCACGACCGTAGGAGGCGTGATTTTGAGGGACATAGGGTTGGAAACCATGGAGCCAACATTGGCCATGGGCACCACTTTCCAACGCCACCAGTCCTAGGGACTATGCATATTGCGCCAATGCGCCTCAATCAAGGGAGAATCCTCTTTATGGTGTCTATTTCTGATATGGAACGTCTGATCAATGGACCTGAATTTGCAATGTACCTACGAAGGGAGAAATTTATTCCACCCTTGGAACAAGACTCCAGAATTCTGCTGAGAAAGAATATCAAGTCTGTTCTTCCAAGATACCTTGAGGCGTTAACACATAATTCTGCAACGTATAGATTTAACCTCAGTGGAAGCCCAGCATGGTTTGACTACTCATGTGGTCTTAACACTGATACAGGGCCATGGCCCTCTGTGTCAATCGAGATTCCTCAGAATCTACACAAGAGTAAGAAGTGGATGGGATTTGCAATATGTGCATCAATTGCAGAGGAACAGCAGCATATGACAGAAGAGGAGTATTGTGTTTACTTTCAATTCATAATGGGTGAATCTAATGAGGATATTCCCCGAGAACTCGAGTATGTCGTGGACATGTGGTCAGAAGAACATAATCGACTTTTGGTTGTTTACATACCGCGAGCAGAGTTTCCCGAAGATTTTATGCATCCATCACCAACTGTAATGAACATTTTCTTCCGAACCAATTGCCCTCATGTAGAGGTTCGAAGAAGTGGGATCCGTATTGTGTACCAGGAAGATTTCCAAGGCTTTGTTGAGACAATCATCCGGTGCATGCAAAGAGAAGATACCCTTGAGCTTTATGATAAATGGGTGGTAGAAGATTGGATAGACTTGATAGGATTGCAAGGTGGTCATTTATGTACTTCAAACAAACTTGATTCCATAACCCGACGAGCAAGAAAGTTCGAATTACTCTCTCAAAAATATAGAAATCAGGACTGGACTGCTCCTTCACTATTCTTTTGTGTATTCTATGGAACTGAAATTTCCAAGTGGAAATGGTTCATTCATTTCAACGAAGGCAACTCTGCAGAAATCCAACTGTCCCCGAATTTGTTTGATGATGCTAATTGGTTAGGCATTGCTGTATGTGCTTTTTTGTGGGTATCCCACGAAGATCCAAACATGATTCTTGGCACTCCTGATTCAGAGTTTAATGTGCTTAGTTGTTGTCTGGACTCTGATGTTTCTTGGGACAGCTTATTTGATGTCAAAATTCAGCATCTTGTGCCGAAACTCAAGCCGTCAGACTTTGCAATTGATTTGACTTTGTTTGTCTATATACCGCGCAATGGTAAATATTTTAAGTTCTGGAGGCAATGTAATCTGGCCAGGGTAACATTTTCGTCCCCTAGCCCATGCTTAGGACTGCATAGTTGTGCCCTTCGCCTAGTATTCAAGGAGGATGTTGAAGATCTTGTACAGACACTTACCCTCTGCGAATTACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

724

Amino Acids

84.83

Weight (kDa)

6.05

Isoelectric Point (pI)

56.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Retrotran_gag_2	PF14223	28 - 154	9.2e-07	gag-polypeptide of LTR copia-type
C-JID	PF20160	353 - 487	7.7e-06	C-JID domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006963)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0323081 RchiOBHm_Chr2g0168921 RchiOBHm_Chr3g0488021 RchiOBHm_Chr7g0240151
rosa_multiflora	Rmu_sc0000394.1_g000060 Rmu_sc0006867.1_g000028 Rmu_sc0015156.1_g000005
rosa_roxburghii	Rroxscaffold_2G00110370 Rroxscaffold_4G00296000 Rroxscaffold_4G00296010 Rroxscaffold_5G00378770
rosa_rugosa	Rorug06G0510400
rosa_samantha	Rh2BG204600 Rh2BG204700 Rh2BG440000 Rh2BG539600 Rh2DG026100 Rh2DG291000 Rh4CG266000 Rh5BG195600 Rh6AG373800 Rh6DG133200 Rh7CG424800 Rh7CG511100
rosa_wichuraiana	Rw4G020380 Rw6G018910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	658
AccB1I	GGYRCC	1 cut(s)	780
AccII	CGCG	3 cut(s)	270, 1339, 2011
AccIII	TCCGGA	1 cut(s)	492
AciI	CCGC	2 cut(s)	1337, 2009
AclWI	GGATC	6 cut(s)	76, 524, 656, 1432, 1445, 1835
AcoI	YGGCCR	3 cut(s)	549, 772, 2052
AcsI	RAATTY	7 cut(s)	344, 902, 929, 960, 1707, 1774, 1938
AcyI	GRCGYC	1 cut(s)	655
AfaI	GTAC	5 cut(s)	56, 914, 1451, 1585, 2145
AfiI	CCNNNNNNNGG	5 cut(s)	806, 859, 922, 2015, 2087
AflIII	ACRYGT	1 cut(s)	1293
AgsI	TTSAA	9 cut(s)	175, 530, 542, 605, 1235, 1590, 1738, 2122, 2135
AhdI	GACNNNNNGTC	1 cut(s)	1297
AjnI	CCWGG	2 cut(s)	1452, 2054
AluBI	AGCT	9 cut(s)	124, 143, 253, 377, 535, 545, 612, 1519, 1923
AluI	AGCT	9 cut(s)	124, 143, 253, 377, 535, 545, 612, 1519, 1923
Alw26I	GTCTC	2 cut(s)	407, 1472
AlwI	GGATC	6 cut(s)	76, 524, 656, 1432, 1445, 1835
Ama87I	CYCGRG	2 cut(s)	1269, 1277
Aor13HI	TCCGGA	1 cut(s)	492
AoxI	GGCC	5 cut(s)	549, 772, 1100, 1106, 2052
ApeKI	GCWGC	1 cut(s)	1198
ApoI	RAATTY	7 cut(s)	344, 902, 929, 960, 1707, 1774, 1938
ArsI	GACNNNNNNTTYG	4 cut(s)	203, 235, 1910, 1942
Asp700I	GAANNNNTTC	2 cut(s)	1391, 1724
AspA2I	CCTAGG	1 cut(s)	805
AspLEI	GCGC	5 cut(s)	245, 265, 826, 834, 2013
AspS9I	GGNCC	4 cut(s)	477, 896, 1100, 1107
AsuHPI	GGTGA	2 cut(s)	1259, 1365
AsuII	TTCGAA	2 cut(s)	1426, 1629
AvaI	CYCGRG	2 cut(s)	1269, 1277
AvaII	GGWCC	2 cut(s)	477, 896
AvrII	CCTAGG	1 cut(s)	805
BaeGI	GKGCMC	2 cut(s)	783, 2107
BalI	TGGCCA	3 cut(s)	551, 774, 2054
BamHI	GGATCC	1 cut(s)	1437
BanI	GGYRCC	1 cut(s)	780
BarI	GAAGNNNNNNTAC	2 cut(s)	2127, 2159
BbsI	GAAGAC	1 cut(s)	432
BbvI	GCAGC	1 cut(s)	1210
BccI	CCATC	3 cut(s)	657, 1153, 1378
BceAI	ACGGC	1 cut(s)	1951
BcgI	CGANNNNNNTGC	6 cut(s)	248, 282, 659, 693, 1389, 1423
BciT130I	CCWGG	2 cut(s)	1454, 2056
BciVI	GTATCC	1 cut(s)	1840
BclI	TGATCA	1 cut(s)	888
BcoDI	GTCTC	2 cut(s)	407, 1472
BfaI	CTAG	4 cut(s)	636, 806, 2076, 2114
BfmI	CTRYAG	3 cut(s)	132, 215, 1752
BfoI	RGCGCY	1 cut(s)	246
BfuI	GTATCC	1 cut(s)	1840
BglII	AGATCT	1 cut(s)	2137
BisI	GCNGC	1 cut(s)	1199
BlnI	CCTAGG	1 cut(s)	805
BlsI	GCNGC	1 cut(s)	1200
Bme1390I	CCNGG	2 cut(s)	1454, 2056
Bme18I	GGWCC	2 cut(s)	477, 896
BmeRI	GACNNNNNGTC	1 cut(s)	1297
BmeT110I	CYCGRG	2 cut(s)	1269, 1277
BmgT120I	GGNCC	4 cut(s)	477, 896, 1100, 1107
BmiI	GGNNCC	3 cut(s)	763, 782, 1439
BmrFI	CCNGG	2 cut(s)	1454, 2056
BmsI	GCATC	7 cut(s)	387, 393, 631, 1187, 1375, 1777, 1954
BpiI	GAAGAC	1 cut(s)	432
BpmI	CTGGAG	3 cut(s)	129, 940, 2056
Bpu10I	CCTNAGC	1 cut(s)	2086
Bpu14I	TTCGAA	2 cut(s)	1426, 1629
BpuEI	CTTGAG	5 cut(s)	666, 682, 1025, 1535, 1946
BsaBI	GATNNNNATC	1 cut(s)	612
BsaHI	GRCGYC	1 cut(s)	655
BsaJI	CCNNGG	7 cut(s)	757, 775, 805, 942, 1103, 1465, 2055
BsaWI	WCCGGW	2 cut(s)	492, 1488
BsaXI	ACNNNNNCTCC	2 cut(s)	2029, 2059
Bsc4I	CCNNNNNNNGG	5 cut(s)	806, 859, 922, 2015, 2087
Bse1I	ACTGG	3 cut(s)	430, 800, 1667
Bse3DI	GCAATG	7 cut(s)	289, 399, 577, 915, 1803, 2020, 2048
Bse8I	GATNNNNATC	1 cut(s)	612
BseAI	TCCGGA	1 cut(s)	492
BseBI	CCWGG	2 cut(s)	1454, 2056
BseDI	CCNNGG	7 cut(s)	757, 775, 805, 942, 1103, 1465, 2055
BseGI	GGATG	4 cut(s)	1164, 1366, 1485, 2134
BseJI	GATNNNNATC	1 cut(s)	612
BseLI	CCNNNNNNNGG	5 cut(s)	806, 859, 922, 2015, 2087
BseMI	GCAATG	7 cut(s)	289, 399, 577, 915, 1803, 2020, 2048
BseMII	CTCAG	5 cut(s)	150, 394, 959, 1060, 1145
BseNI	ACTGG	3 cut(s)	430, 800, 1667
BseRI	GAGGAG	1 cut(s)	1229
BseSI	GKGCMC	2 cut(s)	783, 2107
BseXI	GCAGC	1 cut(s)	1210
BseYI	CCCAGC	1 cut(s)	1057
Bsh1236I	CGCG	3 cut(s)	270, 1339, 2011
Bsh1285I	CGRYCG	2 cut(s)	673, 718
BshFI	GGCC	5 cut(s)	551, 774, 1102, 1108, 2054
BshNI	GGYRCC	1 cut(s)	780
BsiEI	CGRYCG	2 cut(s)	673, 718
BsiHKCI	CYCGRG	2 cut(s)	1269, 1277
BsiSI	CCGG	2 cut(s)	493, 1489
BslFI	GGGAC	5 cut(s)	753, 823, 1753, 1931, 2056
BslI	CCNNNNNNNGG	5 cut(s)	806, 859, 922, 2015, 2087
BsmAI	GTCTC	2 cut(s)	407, 1472
BsmBI	CGTCTC	1 cut(s)	407
BsmFI	GGGAC	5 cut(s)	753, 823, 1753, 1931, 2056
BsnI	GGCC	5 cut(s)	551, 774, 1102, 1108, 2054
BsoBI	CYCGRG	2 cut(s)	1269, 1277
Bsp119I	TTCGAA	2 cut(s)	1426, 1629
Bsp1286I	GDGCHC	2 cut(s)	783, 2107
Bsp13I	TCCGGA	1 cut(s)	492
Bsp1407I	TGTACA	1 cut(s)	2143
Bsp143I	GATC	8 cut(s)	81, 516, 661, 670, 888, 1437, 1840, 2137
Bsp19I	CCATGG	3 cut(s)	757, 775, 1103
Bsp68I	TCGCGA	1 cut(s)	270
BspACI	CCGC	2 cut(s)	1337, 2009
BspANI	GGCC	5 cut(s)	551, 774, 1102, 1108, 2054
BspCNI	CTCAG	5 cut(s)	151, 393, 960, 1059, 1144
BspEI	TCCGGA	1 cut(s)	492
BspFNI	CGCG	3 cut(s)	270, 1339, 2011
BspHI	TCATGA	2 cut(s)	189, 658
BspLI	GGNNCC	3 cut(s)	763, 782, 1439
BspMAI	CTGCAG	1 cut(s)	1756
BspPI	GGATC	6 cut(s)	76, 524, 656, 1432, 1445, 1835
BspT104I	TTCGAA	2 cut(s)	1426, 1629
BspT107I	GGYRCC	1 cut(s)	780
BsrDI	GCAATG	7 cut(s)	289, 399, 577, 915, 1803, 2020, 2048
BsrGI	TGTACA	1 cut(s)	2143
BsrI	ACTGG	3 cut(s)	430, 800, 1667
BssECI	CCNNGG	7 cut(s)	757, 775, 805, 942, 1103, 1465, 2055
BssMI	GATC	8 cut(s)	81, 516, 661, 670, 888, 1437, 1840, 2137
BssNI	GRCGYC	1 cut(s)	655
BssT1I	CCWWGG	6 cut(s)	757, 775, 805, 942, 1103, 1465
Bst2UI	CCWGG	2 cut(s)	1454, 2056
Bst4CI	ACNGT	5 cut(s)	219, 355, 719, 1381, 1767
Bst6I	CTCTTC	1 cut(s)	1206
BstACI	GRCGYC	1 cut(s)	655
BstAPI	GCANNNNNTGC	3 cut(s)	1175, 1184, 1951
BstAUI	TGTACA	1 cut(s)	2143
BstBI	TTCGAA	2 cut(s)	1426, 1629
BstC8I	GCNNGC	4 cut(s)	46, 261, 1341, 1496
BstDEI	CTNAG	7 cut(s)	159, 380, 968, 1046, 1131, 1886, 2086
BstDSI	CCRYGG	3 cut(s)	757, 775, 1103
BstF5I	GGATG	4 cut(s)	1164, 1366, 1485, 2134
BstFNI	CGCG	3 cut(s)	270, 1339, 2011
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	5 cut(s)	245, 265, 826, 834, 2013
BstKTI	GATC	8 cut(s)	84, 519, 664, 673, 891, 1440, 1843, 2140
BstMAI	GTCTC	2 cut(s)	407, 1472
BstMBI	GATC	8 cut(s)	81, 516, 661, 670, 888, 1437, 1840, 2137
BstMCI	CGRYCG	2 cut(s)	673, 718
BstMWI	GCNNNNNNNGC	5 cut(s)	823, 1175, 1184, 1814, 1951
BstNI	CCWGG	2 cut(s)	1454, 2056
BstNSI	RCATGY	3 cut(s)	263, 1297, 1498
BstSCI	CCNGG	2 cut(s)	1452, 2054
BstSFI	CTRYAG	3 cut(s)	132, 215, 1752
BstSLI	GKGCMC	2 cut(s)	783, 2107
BstUI	CGCG	3 cut(s)	270, 1339, 2011
BstV1I	GCAGC	1 cut(s)	1210
BstV2I	GAAGAC	1 cut(s)	432
BstX2I	RGATCY	3 cut(s)	1437, 1840, 2137
BstYI	RGATCY	3 cut(s)	1437, 1840, 2137
BsuI	GTATCC	1 cut(s)	1840
BsuRI	GGCC	5 cut(s)	551, 774, 1102, 1108, 2054
BtgI	CCRYGG	3 cut(s)	757, 775, 1103
BtsCI	GGATG	4 cut(s)	1164, 1366, 1485, 2134
BtsIMutI	CAGTG	4 cut(s)	69, 351, 1054, 1089
BtuMI	TCGCGA	1 cut(s)	270
Cac8I	GCNNGC	4 cut(s)	46, 261, 1341, 1496
CciI	TCATGA	2 cut(s)	189, 658
CfoI	GCGC	5 cut(s)	245, 265, 826, 834, 2013
Cfr13I	GGNCC	4 cut(s)	477, 896, 1100, 1107
CseI	GACGC	1 cut(s)	389
Csp6I	GTAC	5 cut(s)	55, 913, 1450, 1584, 2144
CviQI	GTAC	5 cut(s)	55, 913, 1450, 1584, 2144
DdeI	CTNAG	7 cut(s)	159, 380, 968, 1046, 1131, 1886, 2086
DpnI	GATC	8 cut(s)	83, 518, 663, 672, 890, 1439, 1842, 2139
DpnII	GATC	8 cut(s)	81, 516, 661, 670, 888, 1437, 1840, 2137
DriI	GACNNNNNGTC	1 cut(s)	1297
EaeI	YGGCCR	3 cut(s)	549, 772, 2052
Eam1104I	CTCTTC	1 cut(s)	1206
Eam1105I	GACNNNNNGTC	1 cut(s)	1297
EarI	CTCTTC	1 cut(s)	1206
Eco130I	CCWWGG	6 cut(s)	757, 775, 805, 942, 1103, 1465
Eco47I	GGWCC	2 cut(s)	477, 896
Eco88I	CYCGRG	2 cut(s)	1269, 1277
EcoO109I	RGGNCCY	1 cut(s)	477
EcoRI	GAATTC	1 cut(s)	960
EcoRII	CCWGG	2 cut(s)	1452, 2054
EcoT14I	CCWWGG	6 cut(s)	757, 775, 805, 942, 1103, 1465
EcoT22I	ATGCAT	2 cut(s)	819, 1368
ErhI	CCWWGG	6 cut(s)	757, 775, 805, 942, 1103, 1465
Esp3I	CGTCTC	1 cut(s)	407
FalI	AAGNNNNNCTT	2 cut(s)	1497, 1529
FaqI	GGGAC	5 cut(s)	753, 823, 1753, 1931, 2056
FauNDI	CATATG	1 cut(s)	1203
FbaI	TGATCA	1 cut(s)	888
Fnu4HI	GCNGC	1 cut(s)	1199
FokI	GGATG	4 cut(s)	1171, 1353, 1472, 2141
Fsp4HI	GCNGC	1 cut(s)	1199
FspBI	CTAG	4 cut(s)	636, 806, 2076, 2114
GlaI	GCGC	5 cut(s)	244, 264, 825, 833, 2012
GluI	GCNGC	1 cut(s)	1199
GsaI	CCCAGC	1 cut(s)	1061
GsuI	CTGGAG	3 cut(s)	129, 940, 2056
HaeII	RGCGCY	1 cut(s)	246
HaeIII	GGCC	5 cut(s)	551, 774, 1102, 1108, 2054
HapII	CCGG	2 cut(s)	493, 1489
HgaI	GACGC	1 cut(s)	389
HhaI	GCGC	5 cut(s)	245, 265, 826, 834, 2013
Hin1I	GRCGYC	1 cut(s)	655
Hin6I	GCGC	5 cut(s)	243, 263, 824, 832, 2011
HinP1I	GCGC	5 cut(s)	243, 263, 824, 832, 2011
HincII	GTYRAC	1 cut(s)	1014
HindII	GTYRAC	1 cut(s)	1014
HindIII	AAGCTT	1 cut(s)	251
HpaI	GTTAAC	1 cut(s)	1014
HpaII	CCGG	2 cut(s)	493, 1489
HphI	GGTGA	2 cut(s)	1259, 1365
Hpy166II	GTNNAC	5 cut(s)	1014, 1228, 1291, 1330, 1450
Hpy8I	GTNNAC	5 cut(s)	1014, 1228, 1291, 1330, 1450
Hpy99I	CGWCG	2 cut(s)	657, 1617
HpyAV	CCTTC	7 cut(s)	196, 466, 680, 915, 1683, 1736, 2117
HpyCH4III	ACNGT	5 cut(s)	219, 355, 719, 1381, 1767
HpyCH4IV	ACGT	4 cut(s)	196, 655, 883, 1031
HpyF10VI	GCNNNNNNNGC	5 cut(s)	823, 1175, 1184, 1814, 1951
HpyF3I	CTNAG	7 cut(s)	159, 380, 968, 1046, 1131, 1886, 2086
HpySE526I	ACGT	4 cut(s)	196, 655, 883, 1031
Hsp92I	GRCGYC	1 cut(s)	655
HspAI	GCGC	5 cut(s)	243, 263, 824, 832, 2011
Kpn2I	TCCGGA	1 cut(s)	492
Ksp22I	TGATCA	1 cut(s)	888
KspAI	GTTAAC	1 cut(s)	1014
Kzo9I	GATC	8 cut(s)	81, 516, 661, 670, 888, 1437, 1840, 2137
LmnI	GCTCC	3 cut(s)	148, 761, 1675
Lsp1109I	GCAGC	1 cut(s)	1210
LweI	GCATC	7 cut(s)	387, 393, 631, 1187, 1375, 1777, 1954
MaeI	CTAG	4 cut(s)	636, 806, 2076, 2114
MaeII	ACGT	4 cut(s)	196, 655, 883, 1031
MaeIII	GTNAC	5 cut(s)	67, 197, 209, 290, 2059
MalI	GATC	8 cut(s)	83, 518, 663, 672, 890, 1439, 1842, 2139
MboI	GATC	8 cut(s)	81, 516, 661, 670, 888, 1437, 1840, 2137
MfeI	CAATTG	3 cut(s)	1182, 1405, 1980
MflI	RGATCY	3 cut(s)	1437, 1840, 2137
MhlI	GDGCHC	2 cut(s)	783, 2107
MlsI	TGGCCA	3 cut(s)	551, 774, 2054
MluNI	TGGCCA	3 cut(s)	551, 774, 2054
MlyI	GAGTC	3 cut(s)	490, 947, 1895
MmeI	TCCRAC	3 cut(s)	730, 815, 1786
Mox20I	TGGCCA	3 cut(s)	551, 774, 2054
Mph1103I	ATGCAT	2 cut(s)	819, 1368
MroI	TCCGGA	1 cut(s)	492
MroXI	GAANNNNTTC	2 cut(s)	1391, 1724
MscI	TGGCCA	3 cut(s)	551, 774, 2054
MseI	TTAA	6 cut(s)	59, 1013, 1041, 1086, 1878, 2028
MslI	CAYNNNNRTG	4 cut(s)	356, 504, 570, 2100
Msp20I	TGGCCA	3 cut(s)	551, 774, 2054
MspI	CCGG	2 cut(s)	493, 1489
MspR9I	CCNGG	2 cut(s)	1454, 2056
MunI	CAATTG	3 cut(s)	1182, 1405, 1980
MvaI	CCWGG	2 cut(s)	1454, 2056
MvnI	CGCG	3 cut(s)	270, 1339, 2011
MwoI	GCNNNNNNNGC	5 cut(s)	823, 1175, 1184, 1814, 1951
NcoI	CCATGG	3 cut(s)	757, 775, 1103
NdeI	CATATG	1 cut(s)	1203
NdeII	GATC	8 cut(s)	81, 516, 661, 670, 888, 1437, 1840, 2137
NlaIV	GGNNCC	3 cut(s)	763, 782, 1439
NmuCI	GTSAC	4 cut(s)	67, 197, 209, 290
NruI	TCGCGA	1 cut(s)	270
NsiI	ATGCAT	2 cut(s)	819, 1368
NspI	RCATGY	3 cut(s)	263, 1297, 1498
NspV	TTCGAA	2 cut(s)	1426, 1629
PaeI	GCATGC	2 cut(s)	263, 1498
PaeR7I	CTCGAG	1 cut(s)	1277
PagI	TCATGA	2 cut(s)	189, 658
PciI	ACATGT	1 cut(s)	1293
PcsI	WCGNNNNNNNCGW	3 cut(s)	652, 700, 1284
PdmI	GAANNNNTTC	2 cut(s)	1391, 1724
PfeI	GAWTC	7 cut(s)	849, 1126, 1135, 1250, 1601, 1852, 1868
PflFI	GACNNNGTC	1 cut(s)	353
PkrI	GCNGC	1 cut(s)	1200
Ple19I	CGATCG	1 cut(s)	673
PleI	GAGTC	3 cut(s)	490, 947, 1895
PpsI	GAGTC	3 cut(s)	490, 947, 1895
PpuMI	RGGWCCY	1 cut(s)	477
PscI	ACATGT	1 cut(s)	1293
Psp5II	RGGWCCY	1 cut(s)	477
Psp6I	CCWGG	2 cut(s)	1452, 2054
PspFI	CCCAGC	1 cut(s)	1057
PspGI	CCWGG	2 cut(s)	1452, 2054
PspN4I	GGNNCC	3 cut(s)	763, 782, 1439
PspPI	GGNCC	4 cut(s)	477, 896, 1100, 1107
PspPPI	RGGWCCY	1 cut(s)	477
PspXI	VCTCGAGB	1 cut(s)	1277
PstI	CTGCAG	1 cut(s)	1756
PsuI	RGATCY	3 cut(s)	1437, 1840, 2137
PsyI	GACNNNGTC	1 cut(s)	353
PvuI	CGATCG	1 cut(s)	673
RruI	TCGCGA	1 cut(s)	270
RsaI	GTAC	5 cut(s)	56, 914, 1451, 1585, 2145
RsaNI	GTAC	5 cut(s)	55, 913, 1450, 1584, 2144
RseI	CAYNNNNRTG	4 cut(s)	356, 504, 570, 2100
SaqAI	TTAA	6 cut(s)	59, 1013, 1041, 1086, 1878, 2028
SatI	GCNGC	1 cut(s)	1199
Sau3AI	GATC	8 cut(s)	81, 516, 661, 670, 888, 1437, 1840, 2137
Sau96I	GGNCC	4 cut(s)	477, 896, 1100, 1107
SchI	GAGTC	3 cut(s)	490, 947, 1895
ScrFI	CCNGG	2 cut(s)	1454, 2056
SduI	GDGCHC	2 cut(s)	783, 2107
SfaNI	GCATC	7 cut(s)	387, 393, 631, 1187, 1375, 1777, 1954
SfcI	CTRYAG	3 cut(s)	132, 215, 1752
Sfr274I	CTCGAG	1 cut(s)	1277
SfuI	TTCGAA	2 cut(s)	1426, 1629
SinI	GGWCC	2 cut(s)	477, 896
SlaI	CTCGAG	1 cut(s)	1277
SmiMI	CAYNNNNRTG	4 cut(s)	356, 504, 570, 2100
SmlI	CTYRAG	6 cut(s)	681, 697, 1004, 1277, 1514, 1961
SmoI	CTYRAG	6 cut(s)	681, 697, 1004, 1277, 1514, 1961
SphI	GCATGC	2 cut(s)	263, 1498
SsiI	CCGC	2 cut(s)	1337, 2009
SspI	AATATT	1 cut(s)	2024
SspMI	CTAG	4 cut(s)	636, 806, 2076, 2114
StyD4I	CCNGG	2 cut(s)	1452, 2054
StyI	CCWWGG	6 cut(s)	757, 775, 805, 942, 1103, 1465
TaaI	ACNGT	5 cut(s)	219, 355, 719, 1381, 1767
TaiI	ACGT	4 cut(s)	199, 658, 886, 1034
TaqI	TCGA	8 cut(s)	21, 652, 673, 1122, 1278, 1315, 1426, 1629
TatI	WGTACW	2 cut(s)	1583, 2143
TfiI	GAWTC	7 cut(s)	849, 1126, 1135, 1250, 1601, 1852, 1868
Tru1I	TTAA	6 cut(s)	59, 1013, 1041, 1086, 1878, 2028
Tru9I	TTAA	6 cut(s)	59, 1013, 1041, 1086, 1878, 2028
TscAI	CASTG	4 cut(s)	76, 358, 1054, 1096
TseFI	GTSAC	4 cut(s)	67, 197, 209, 290
TseI	GCWGC	1 cut(s)	1198
Tsp45I	GTSAC	4 cut(s)	67, 197, 209, 290
TspDTI	ATGAA	8 cut(s)	26, 178, 217, 588, 1228, 1400, 1717, 1721
TspGWI	ACGGA	2 cut(s)	529, 1430
TspRI	CASTG	4 cut(s)	76, 358, 1054, 1096
Tth111I	GACNNNGTC	1 cut(s)	353
VpaK11BI	GGWCC	2 cut(s)	477, 896
XapI	RAATTY	7 cut(s)	344, 902, 929, 960, 1707, 1774, 1938
XceI	RCATGY	3 cut(s)	263, 1297, 1498
XhoI	CTCGAG	1 cut(s)	1277
XmaJI	CCTAGG	1 cut(s)	805
XmnI	GAANNNNTTC	2 cut(s)	1391, 1724
XspI	CTAG	4 cut(s)	636, 806, 2076, 2114
ZraI	GACGTC	1 cut(s)	656
Zsp2I	ATGCAT	2 cut(s)	819, 1368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.