Rh2DG291000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0006963
Physical Location & Seq
Forward (+)
34177010 .. 34178091
1082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG291000.1

Sequence Viewer

Length: 927 bp
ATGTCAAACACAAACAAACTCGATTTTGTTCCATTGGATTATGCAGGCAAAAGGTACTTAATTTGGGTCACTGATGTCGAGATCCACCTTATTGCCCGTGATTTATTGCATACAATCCAAGAGCTTTGTCCTATAGAAACAGCTCCAGACCCTCAAACTGAGAAAGATAATTCCAAGGCACTTGTCTTCATGAAACGTCACATGGATAGTGACCTACAGTTTGAGTTCATAAATGAGGATAGCGCCATAAAGCTTTGGCATGCGCTTCGCGAACGATATGGCAATGTTCGTGACTCCATACTTCCGAATACAGAAGCAGAATGGAAACATCTTCGCTTCTCTGAATTTGACACTGTCATGCAATTTTATTCGGAAGCTCTCAGCATTAGAGCAATGATGCGTCTCTGTGGAAAAACAATCACAGAAGACCAATTGATTGAGAAAACCCTCAATACCTTCCCCGTCTATGCTATGAGGTCCTCTGACTTATTCCGGACTCATGTAAATGCAAGACGGATCACAAGTTTTCAACAGCTTATTGAAGCTATGGTCACTACTGAAAGACATGGCAATGAACTTGTGAAAAGAAGATTTGATAGGCTTCAAGATAGCTATCAAGAGCATCGTCCTATGGCTAGAGAAAGTCGCCATCGACGTCATGATCCATATGATCGAAATGCTCAAGAAGGTAATCACTCAAGGCGACAATCACACGACCGTAGGAGGCGTGATTTTGAGGGACATAGGGTTGGAAACCATGGAGCCAACGTTGGCCATGGGCACCACTTTCCAACGCCACTAGTCTTAGGGACTATGCATATTGCGCCAATGCGCCTCAATCAAGGGAGAATCCTCTTTATGGTGTCTATTTCTGATATGGAACGTCTGATCAATGGACCTGAATTTGCAATGTACCTAAGAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

308

Amino Acids

36.42

Weight (kDa)

8.85

Isoelectric Point (pI)

63.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 27 - 154 6.3e-07 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 658
AccB1I GGYRCC 1 cut(s) 780
AccII CGCG 1 cut(s) 270
AccIII TCCGGA 1 cut(s) 492
AclI AACGTT 1 cut(s) 768
AclWI GGATC 3 cut(s) 76, 524, 656
AcoI YGGCCR 1 cut(s) 772
AcsI RAATTY 2 cut(s) 344, 902
AcyI GRCGYC 1 cut(s) 655
AfaI GTAC 2 cut(s) 56, 914
AfiI CCNNNNNNNGG 1 cut(s) 859
AgsI TTSAA 3 cut(s) 530, 542, 605
AhlI ACTAGT 1 cut(s) 799
AluBI AGCT 7 cut(s) 124, 143, 253, 377, 535, 545, 612
AluI AGCT 7 cut(s) 124, 143, 253, 377, 535, 545, 612
Alw26I GTCTC 1 cut(s) 407
AlwI GGATC 3 cut(s) 76, 524, 656
Aor13HI TCCGGA 1 cut(s) 492
AoxI GGCC 1 cut(s) 772
ApoI RAATTY 2 cut(s) 344, 902
ArsI GACNNNNNNTTYG 2 cut(s) 203, 235
AspLEI GCGC 4 cut(s) 245, 265, 826, 834
AspS9I GGNCC 2 cut(s) 477, 896
AvaII GGWCC 2 cut(s) 477, 896
BaeGI GKGCMC 1 cut(s) 783
BalI TGGCCA 1 cut(s) 774
BanI GGYRCC 1 cut(s) 780
BbsI GAAGAC 2 cut(s) 178, 432
BccI CCATC 1 cut(s) 657
BcgI CGANNNNNNTGC 2 cut(s) 248, 282
BclI TGATCA 1 cut(s) 888
BcoDI GTCTC 1 cut(s) 407
BcuI ACTAGT 1 cut(s) 799
BfaI CTAG 2 cut(s) 636, 800
BfmI CTRYAG 2 cut(s) 132, 215
BfoI RGCGCY 1 cut(s) 246
Bme18I GGWCC 2 cut(s) 477, 896
BmgT120I GGNCC 2 cut(s) 477, 896
BmiI GGNNCC 2 cut(s) 763, 782
BmsI GCATC 2 cut(s) 387, 631
BpiI GAAGAC 2 cut(s) 178, 432
BpmI CTGGAG 1 cut(s) 129
BpuEI CTTGAG 2 cut(s) 666, 682
BsaBI GATNNNNATC 1 cut(s) 612
BsaHI GRCGYC 1 cut(s) 655
BsaJI CCNNGG 3 cut(s) 174, 757, 775
BsaWI WCCGGW 1 cut(s) 492
BsaXI ACNNNNNCTCC 2 cut(s) 753, 783
Bsc4I CCNNNNNNNGG 1 cut(s) 859
Bse3DI GCAATG 4 cut(s) 289, 399, 577, 915
Bse8I GATNNNNATC 1 cut(s) 612
BseAI TCCGGA 1 cut(s) 492
BseDI CCNNGG 3 cut(s) 174, 757, 775
BseJI GATNNNNATC 1 cut(s) 612
BseLI CCNNNNNNNGG 1 cut(s) 859
BseMI GCAATG 4 cut(s) 289, 399, 577, 915
BseMII CTCAG 2 cut(s) 150, 394
BseSI GKGCMC 1 cut(s) 783
Bsh1236I CGCG 1 cut(s) 270
Bsh1285I CGRYCG 1 cut(s) 718
BshFI GGCC 1 cut(s) 774
BshNI GGYRCC 1 cut(s) 780
BsiEI CGRYCG 1 cut(s) 718
BsiSI CCGG 1 cut(s) 493
BslFI GGGAC 2 cut(s) 753, 823
BslI CCNNNNNNNGG 1 cut(s) 859
BsmAI GTCTC 1 cut(s) 407
BsmBI CGTCTC 1 cut(s) 407
BsmFI GGGAC 2 cut(s) 753, 823
BsnI GGCC 1 cut(s) 774
Bsp1286I GDGCHC 1 cut(s) 783
Bsp13I TCCGGA 1 cut(s) 492
Bsp143I GATC 5 cut(s) 81, 516, 661, 670, 888
Bsp19I CCATGG 2 cut(s) 757, 775
Bsp68I TCGCGA 1 cut(s) 270
BspANI GGCC 1 cut(s) 774
BspCNI CTCAG 2 cut(s) 151, 393
BspEI TCCGGA 1 cut(s) 492
BspFNI CGCG 1 cut(s) 270
BspHI TCATGA 2 cut(s) 189, 658
BspLI GGNNCC 2 cut(s) 763, 782
BspPI GGATC 3 cut(s) 76, 524, 656
BspT107I GGYRCC 1 cut(s) 780
BsrDI GCAATG 4 cut(s) 289, 399, 577, 915
BssECI CCNNGG 3 cut(s) 174, 757, 775
BssMI GATC 5 cut(s) 81, 516, 661, 670, 888
BssNI GRCGYC 1 cut(s) 655
BssT1I CCWWGG 3 cut(s) 174, 757, 775
Bst4CI ACNGT 3 cut(s) 219, 355, 719
BstACI GRCGYC 1 cut(s) 655
BstC8I GCNNGC 2 cut(s) 46, 261
BstDEI CTNAG 4 cut(s) 159, 380, 805, 917
BstDSI CCRYGG 2 cut(s) 757, 775
BstFNI CGCG 1 cut(s) 270
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 4 cut(s) 245, 265, 826, 834
BstKTI GATC 5 cut(s) 84, 519, 664, 673, 891
BstMAI GTCTC 1 cut(s) 407
BstMBI GATC 5 cut(s) 81, 516, 661, 670, 888
BstMCI CGRYCG 1 cut(s) 718
BstMWI GCNNNNNNNGC 1 cut(s) 823
BstNSI RCATGY 1 cut(s) 263
BstSFI CTRYAG 2 cut(s) 132, 215
BstSLI GKGCMC 1 cut(s) 783
BstUI CGCG 1 cut(s) 270
BstV2I GAAGAC 2 cut(s) 178, 432
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BsuRI GGCC 1 cut(s) 774
BtgI CCRYGG 2 cut(s) 757, 775
BtsIMutI CAGTG 2 cut(s) 69, 351
BtuMI TCGCGA 1 cut(s) 270
Cac8I GCNNGC 2 cut(s) 46, 261
CciI TCATGA 2 cut(s) 189, 658
CfoI GCGC 4 cut(s) 245, 265, 826, 834
Cfr13I GGNCC 2 cut(s) 477, 896
CseI GACGC 1 cut(s) 389
Csp6I GTAC 2 cut(s) 55, 913
CviAII CATG 9 cut(s) 190, 202, 260, 358, 500, 566, 659, 758, 776
CviQI GTAC 2 cut(s) 55, 913
DdeI CTNAG 4 cut(s) 159, 380, 805, 917
DpnI GATC 5 cut(s) 83, 518, 663, 672, 890
DpnII GATC 5 cut(s) 81, 516, 661, 670, 888
EaeI YGGCCR 1 cut(s) 772
Eco130I CCWWGG 3 cut(s) 174, 757, 775
Eco47I GGWCC 2 cut(s) 477, 896
EcoO109I RGGNCCY 1 cut(s) 477
EcoT14I CCWWGG 3 cut(s) 174, 757, 775
EcoT22I ATGCAT 1 cut(s) 819
ErhI CCWWGG 3 cut(s) 174, 757, 775
Esp3I CGTCTC 1 cut(s) 407
FaeI CATG 9 cut(s) 193, 205, 263, 361, 503, 569, 662, 761, 779
FaqI GGGAC 2 cut(s) 753, 823
FatI CATG 9 cut(s) 189, 201, 259, 357, 499, 565, 658, 757, 775
FauNDI CATATG 1 cut(s) 667
FbaI TGATCA 1 cut(s) 888
FspBI CTAG 2 cut(s) 636, 800
GlaI GCGC 4 cut(s) 244, 264, 825, 833
GsuI CTGGAG 1 cut(s) 129
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 1 cut(s) 774
HapII CCGG 1 cut(s) 493
HgaI GACGC 1 cut(s) 389
HhaI GCGC 4 cut(s) 245, 265, 826, 834
Hin1I GRCGYC 1 cut(s) 655
Hin1II CATG 9 cut(s) 193, 205, 263, 361, 503, 569, 662, 761, 779
Hin6I GCGC 4 cut(s) 243, 263, 824, 832
HinP1I GCGC 4 cut(s) 243, 263, 824, 832
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 3 cut(s) 293, 496, 849
HpaII CCGG 1 cut(s) 493
Hpy188I TCNGA 6 cut(s) 306, 343, 373, 484, 874, 888
Hpy99I CGWCG 1 cut(s) 657
HpyAV CCTTC 3 cut(s) 466, 680, 915
HpyCH4III ACNGT 3 cut(s) 219, 355, 719
HpyCH4IV ACGT 4 cut(s) 196, 655, 768, 883
HpyCH4V TGCA 6 cut(s) 44, 109, 361, 509, 817, 908
HpyF10VI GCNNNNNNNGC 1 cut(s) 823
HpyF3I CTNAG 4 cut(s) 159, 380, 805, 917
HpySE526I ACGT 4 cut(s) 196, 655, 768, 883
Hsp92I GRCGYC 1 cut(s) 655
Hsp92II CATG 9 cut(s) 193, 205, 263, 361, 503, 569, 662, 761, 779
HspAI GCGC 4 cut(s) 243, 263, 824, 832
Kpn2I TCCGGA 1 cut(s) 492
Ksp22I TGATCA 1 cut(s) 888
Kzo9I GATC 5 cut(s) 81, 516, 661, 670, 888
LmnI GCTCC 2 cut(s) 148, 761
LpnPI CCDG 4 cut(s) 30, 159, 506, 912
LweI GCATC 2 cut(s) 387, 631
MaeI CTAG 2 cut(s) 636, 800
MaeII ACGT 4 cut(s) 196, 655, 768, 883
MaeIII GTNAC 5 cut(s) 67, 197, 209, 290, 550
MalI GATC 5 cut(s) 83, 518, 663, 672, 890
MboI GATC 5 cut(s) 81, 516, 661, 670, 888
MboII GAAGA 4 cut(s) 178, 323, 437, 600
MfeI CAATTG 1 cut(s) 431
MflI RGATCY 1 cut(s) 81
MhlI GDGCHC 1 cut(s) 783
MlsI TGGCCA 1 cut(s) 774
MluCI AATT 6 cut(s) 60, 169, 344, 362, 431, 902
MluNI TGGCCA 1 cut(s) 774
MlyI GAGTC 2 cut(s) 287, 490
MmeI TCCRAC 2 cut(s) 730, 815
MnlI CCTC 9 cut(s) 162, 229, 458, 468, 490, 717, 730, 845, 863
Mox20I TGGCCA 1 cut(s) 774
Mph1103I ATGCAT 1 cut(s) 819
MroI TCCGGA 1 cut(s) 492
MscI TGGCCA 1 cut(s) 774
MseI TTAA 1 cut(s) 59
MslI CAYNNNNRTG 3 cut(s) 356, 504, 570
Msp20I TGGCCA 1 cut(s) 774
MspI CCGG 1 cut(s) 493
MunI CAATTG 1 cut(s) 431
MvnI CGCG 1 cut(s) 270
MwoI GCNNNNNNNGC 1 cut(s) 823
NcoI CCATGG 2 cut(s) 757, 775
NdeI CATATG 1 cut(s) 667
NdeII GATC 5 cut(s) 81, 516, 661, 670, 888
NlaIII CATG 9 cut(s) 193, 205, 263, 361, 503, 569, 662, 761, 779
NlaIV GGNNCC 2 cut(s) 763, 782
NmuCI GTSAC 5 cut(s) 67, 197, 209, 290, 550
NruI TCGCGA 1 cut(s) 270
NsiI ATGCAT 1 cut(s) 819
NspI RCATGY 1 cut(s) 263
PaeI GCATGC 1 cut(s) 263
PagI TCATGA 2 cut(s) 189, 658
PcsI WCGNNNNNNNCGW 1 cut(s) 652
PfeI GAWTC 1 cut(s) 849
PflFI GACNNNGTC 1 cut(s) 353
PleI GAGTC 2 cut(s) 287, 490
PpsI GAGTC 2 cut(s) 287, 490
PpuMI RGGWCCY 1 cut(s) 477
Psp1406I AACGTT 1 cut(s) 768
Psp5II RGGWCCY 1 cut(s) 477
PspN4I GGNNCC 2 cut(s) 763, 782
PspPI GGNCC 2 cut(s) 477, 896
PspPPI RGGWCCY 1 cut(s) 477
PsuI RGATCY 1 cut(s) 81
PsyI GACNNNGTC 1 cut(s) 353
RruI TCGCGA 1 cut(s) 270
RsaI GTAC 2 cut(s) 56, 914
RsaNI GTAC 2 cut(s) 55, 913
RseI CAYNNNNRTG 3 cut(s) 356, 504, 570
SaqAI TTAA 1 cut(s) 59
Sau3AI GATC 5 cut(s) 81, 516, 661, 670, 888
Sau96I GGNCC 2 cut(s) 477, 896
SchI GAGTC 2 cut(s) 287, 490
SduI GDGCHC 1 cut(s) 783
SfaNI GCATC 2 cut(s) 387, 631
SfcI CTRYAG 2 cut(s) 132, 215
SinI GGWCC 2 cut(s) 477, 896
SmiMI CAYNNNNRTG 3 cut(s) 356, 504, 570
SmlI CTYRAG 2 cut(s) 681, 697
SmoI CTYRAG 2 cut(s) 681, 697
SpeI ACTAGT 1 cut(s) 799
SphI GCATGC 1 cut(s) 263
Sse9I AATT 6 cut(s) 60, 169, 344, 362, 431, 902
SspMI CTAG 2 cut(s) 636, 800
StyI CCWWGG 3 cut(s) 174, 757, 775
TaaI ACNGT 3 cut(s) 219, 355, 719
TaiI ACGT 4 cut(s) 199, 658, 771, 886
TaqI TCGA 4 cut(s) 21, 78, 652, 673
TasI AATT 6 cut(s) 60, 169, 344, 362, 431, 902
TfiI GAWTC 1 cut(s) 849
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TscAI CASTG 2 cut(s) 76, 358
TseFI GTSAC 5 cut(s) 67, 197, 209, 290, 550
Tsp45I GTSAC 5 cut(s) 67, 197, 209, 290, 550
TspDTI ATGAA 4 cut(s) 178, 206, 217, 588
TspGWI ACGGA 1 cut(s) 529
TspRI CASTG 2 cut(s) 76, 358
Tth111I GACNNNGTC 1 cut(s) 353
VpaK11BI GGWCC 2 cut(s) 477, 896
XapI RAATTY 2 cut(s) 344, 902
XceI RCATGY 1 cut(s) 263
XspI CTAG 2 cut(s) 636, 800
ZraI GACGTC 1 cut(s) 656
Zsp2I ATGCAT 1 cut(s) 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.