RchiOBHm_Chr1g0324351

Protein transport protein Sec24-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0009667
Physical Location & Seq
Reverse (-)
12031759 .. 12036657
4899 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55419

Sequence Viewer

Length: 792 bp
ATGCTTTGCAGCTCCTCGAATTGGAACAGAACAATTGGGCTACTCCTCCTATTGAGTAATCTCCAAGTTTATTGTGTGGAAACTTGTAAGGACCGTATTGGATCAGCACTTGAAACAATTAGACCAACAACTTCATGGGAGAGAAGAACAGCAGCAGGGCAAGGAGTAGATGGTGTTTTGATGGGTGGGCGAGGTTTTGGGGTGGCAATTGAAGCCCTTTTAAACTACCTTGGATCTGAATATGGAAGCACATTTGCACTAGGTAGAGTCTTTGCCTTTTTGTCTAGTCCTCCTGACTATGGAGCTGGGCAACTAGATACAAGACAGTACGGTGAACAATATGCTAGTAGAGGAGAGGATGCGGACCGTGCATTGCTTCCTGAGCAGACACCTTTCTATAAAGATTTGGCTGCTGTCGTTGTTCAAGCAGGTGTTTGCGTAGACATCTTTGCTATTACAAATGAGAATACAGATTTGGCATCTCTGAAGTTTCTTAGCGTAGAAAGTGGAGGCTCATTGTACTTTTATTCAAATACTGATGATTTAACACTTCCACAGGACATGTACCGGATGCTAAGTCGACCATATGCTTTTGGCTGTGTACTGCGATTGAGGATATCATCTGAATTCAAAACTGGTCATTCTTATGATCACTTCTTTCCAGATCCACAGTATGAGAATGTTCAACACATTATCTGTTGTGATTCTTATGCCGCATATGCTTATGACTTTGAGTTTGAAGCTACCAAGGAATTTGCAAAGTTTTCATGGCAAAAAGAGCAAAGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

263

Amino Acids

29.39

Weight (kDa)

4.82

Isoelectric Point (pI)

39.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec23_trunk PF04811 64 - 190 1.5e-18 Sec23/Sec24 trunk domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 419
Acc36I ACCTGC 1 cut(s) 419
AccI GTMKAC 2 cut(s) 441, 580
AciI CCGC 2 cut(s) 362, 714
AclWI GGATC 3 cut(s) 109, 241, 659
AcsI RAATTY 2 cut(s) 626, 752
AcuI CTGAAG 1 cut(s) 506
AfaI GTAC 4 cut(s) 329, 521, 566, 603
AfiI CCNNNNNNNGG 2 cut(s) 21, 299
AflIII ACRYGT 1 cut(s) 561
AgsI TTSAA 7 cut(s) 113, 212, 425, 531, 631, 686, 740
AjuI GAANNNNNNNTTGG 2 cut(s) 458, 490
AluBI AGCT 3 cut(s) 12, 305, 743
AluI AGCT 3 cut(s) 12, 305, 743
AlwI GGATC 3 cut(s) 109, 241, 659
ApeKI GCWGC 3 cut(s) 9, 152, 410
ApoI RAATTY 2 cut(s) 626, 752
ArsI GACNNNNNNTTYG 2 cut(s) 719, 751
AspS9I GGNCC 2 cut(s) 91, 364
AsuHPI GGTGA 1 cut(s) 344
AvaII GGWCC 2 cut(s) 91, 364
BbvI GCAGC 3 cut(s) 21, 164, 397
BccI CCATC 2 cut(s) 164, 175
BclI TGATCA 1 cut(s) 649
BfaI CTAG 4 cut(s) 260, 285, 314, 345
BfuAI ACCTGC 1 cut(s) 419
BisI GCNGC 4 cut(s) 10, 153, 411, 714
BlsI GCNGC 4 cut(s) 11, 154, 412, 715
Bme18I GGWCC 2 cut(s) 91, 364
BmgT120I GGNCC 2 cut(s) 91, 364
BmsI GCATC 3 cut(s) 349, 488, 561
Bpu10I CCTNAGC 1 cut(s) 381
BsaJI CCNNGG 2 cut(s) 229, 747
BsaWI WCCGGW 1 cut(s) 567
Bsc4I CCNNNNNNNGG 2 cut(s) 21, 299
Bse1I ACTGG 1 cut(s) 640
Bse3DI GCAATG 1 cut(s) 371
BseDI CCNNGG 2 cut(s) 229, 747
BseGI GGATG 2 cut(s) 364, 576
BseLI CCNNNNNNNGG 2 cut(s) 21, 299
BseMI GCAATG 1 cut(s) 371
BseMII CTCAG 1 cut(s) 372
BseNI ACTGG 1 cut(s) 640
BseRI GAGGAG 3 cut(s) 4, 35, 366
BseXI GCAGC 3 cut(s) 21, 164, 397
BseYI CCCAGC 1 cut(s) 305
BsiSI CCGG 1 cut(s) 568
BslI CCNNNNNNNGG 2 cut(s) 21, 299
Bsp143I GATC 4 cut(s) 101, 233, 649, 664
BspACI CCGC 2 cut(s) 362, 714
BspCNI CTCAG 1 cut(s) 373
BspMI ACCTGC 1 cut(s) 419
BspPI GGATC 3 cut(s) 109, 241, 659
BsrDI GCAATG 1 cut(s) 371
BsrI ACTGG 1 cut(s) 640
BssECI CCNNGG 2 cut(s) 229, 747
BssMI GATC 4 cut(s) 101, 233, 649, 664
BssT1I CCWWGG 2 cut(s) 229, 747
Bst4CI ACNGT 5 cut(s) 95, 327, 332, 368, 672
BstDEI CTNAG 3 cut(s) 381, 494, 575
BstF5I GGATG 2 cut(s) 364, 576
BstKTI GATC 4 cut(s) 104, 236, 652, 667
BstMBI GATC 4 cut(s) 101, 233, 649, 664
BstMWI GCNNNNNNNGC 5 cut(s) 212, 368, 382, 719, 778
BstNSI RCATGY 1 cut(s) 565
BstV1I GCAGC 3 cut(s) 21, 164, 397
BstX2I RGATCY 2 cut(s) 233, 664
BstYI RGATCY 2 cut(s) 233, 664
BtsCI GGATG 2 cut(s) 364, 576
BveI ACCTGC 1 cut(s) 419
Cfr13I GGNCC 2 cut(s) 91, 364
CpoI CGGWCCG 1 cut(s) 364
Csp6I GTAC 4 cut(s) 328, 520, 565, 602
CspI CGGWCCG 1 cut(s) 364
CviAII CATG 3 cut(s) 135, 562, 768
CviJI RGCY 8 cut(s) 12, 40, 215, 305, 410, 513, 597, 743
CviKI_1 RGCY 8 cut(s) 12, 40, 215, 305, 410, 513, 597, 743
CviQI GTAC 4 cut(s) 328, 520, 565, 602
DdeI CTNAG 3 cut(s) 381, 494, 575
DpnI GATC 4 cut(s) 103, 235, 651, 666
DpnII GATC 4 cut(s) 101, 233, 649, 664
DraI TTTAAA 1 cut(s) 222
Eco130I CCWWGG 2 cut(s) 229, 747
Eco32I GATATC 1 cut(s) 618
Eco47I GGWCC 2 cut(s) 91, 364
Eco57I CTGAAG 1 cut(s) 506
EcoRI GAATTC 1 cut(s) 626
EcoRV GATATC 1 cut(s) 618
EcoT14I CCWWGG 2 cut(s) 229, 747
ErhI CCWWGG 2 cut(s) 229, 747
FaeI CATG 3 cut(s) 138, 565, 771
FatI CATG 3 cut(s) 134, 561, 767
FauNDI CATATG 2 cut(s) 586, 718
FbaI TGATCA 1 cut(s) 649
FblI GTMKAC 2 cut(s) 441, 580
Fnu4HI GCNGC 4 cut(s) 10, 153, 411, 714
FokI GGATG 2 cut(s) 371, 583
Fsp4HI GCNGC 4 cut(s) 10, 153, 411, 714
FspBI CTAG 4 cut(s) 260, 285, 314, 345
GluI GCNGC 4 cut(s) 10, 153, 411, 714
GsaI CCCAGC 1 cut(s) 309
HapII CCGG 1 cut(s) 568
Hin1II CATG 3 cut(s) 138, 565, 771
HincII GTYRAC 1 cut(s) 581
HindII GTYRAC 1 cut(s) 581
HinfI GANTC 2 cut(s) 267, 704
HpaII CCGG 1 cut(s) 568
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 4 cut(s) 335, 442, 581, 602
Hpy188I TCNGA 3 cut(s) 238, 486, 625
Hpy188III TCNNGA 3 cut(s) 293, 380, 662
Hpy8I GTNNAC 4 cut(s) 335, 442, 581, 602
HpyCH4III ACNGT 5 cut(s) 95, 327, 332, 368, 672
HpyCH4V TGCA 4 cut(s) 9, 257, 371, 758
HpyF10VI GCNNNNNNNGC 5 cut(s) 212, 368, 382, 719, 778
HpyF3I CTNAG 3 cut(s) 381, 494, 575
Hsp92II CATG 3 cut(s) 138, 565, 771
Ksp22I TGATCA 1 cut(s) 649
Kzo9I GATC 4 cut(s) 101, 233, 649, 664
LmnI GCTCC 2 cut(s) 17, 302
LpnPI CCDG 9 cut(s) 141, 291, 306, 393, 414, 542, 581, 621, 675
Lsp1109I GCAGC 3 cut(s) 21, 164, 397
LweI GCATC 3 cut(s) 349, 488, 561
MaeI CTAG 4 cut(s) 260, 285, 314, 345
MalI GATC 4 cut(s) 103, 235, 651, 666
MboI GATC 4 cut(s) 101, 233, 649, 664
MboII GAAGA 1 cut(s) 156
MfeI CAATTG 2 cut(s) 33, 207
MflI RGATCY 2 cut(s) 233, 664
MluCI AATT 6 cut(s) 19, 33, 117, 207, 626, 752
MlyI GAGTC 1 cut(s) 276
MnlI CCTC 8 cut(s) 25, 56, 185, 300, 344, 349, 503, 606
MseI TTAA 2 cut(s) 221, 545
MslI CAYNNNNRTG 1 cut(s) 645
MspI CCGG 1 cut(s) 568
MunI CAATTG 2 cut(s) 33, 207
MwoI GCNNNNNNNGC 5 cut(s) 212, 368, 382, 719, 778
NdeI CATATG 2 cut(s) 586, 718
NdeII GATC 4 cut(s) 101, 233, 649, 664
NlaIII CATG 3 cut(s) 138, 565, 771
NspI RCATGY 1 cut(s) 565
PaqCI CACCTGC 1 cut(s) 419
PciI ACATGT 1 cut(s) 561
PfeI GAWTC 1 cut(s) 704
PkrI GCNGC 4 cut(s) 11, 154, 412, 715
PleI GAGTC 1 cut(s) 275
PpsI GAGTC 1 cut(s) 275
PscI ACATGT 1 cut(s) 561
PspFI CCCAGC 1 cut(s) 305
PspPI GGNCC 2 cut(s) 91, 364
PsuI RGATCY 2 cut(s) 233, 664
RsaI GTAC 4 cut(s) 329, 521, 566, 603
RsaNI GTAC 4 cut(s) 328, 520, 565, 602
RseI CAYNNNNRTG 1 cut(s) 645
Rsr2I CGGWCCG 1 cut(s) 364
RsrII CGGWCCG 1 cut(s) 364
SalI GTCGAC 1 cut(s) 579
SaqAI TTAA 2 cut(s) 221, 545
SatI GCNGC 4 cut(s) 10, 153, 411, 714
Sau3AI GATC 4 cut(s) 101, 233, 649, 664
Sau96I GGNCC 2 cut(s) 91, 364
SchI GAGTC 1 cut(s) 276
SetI ASST 8 cut(s) 14, 196, 231, 265, 307, 394, 433, 745
SfaNI GCATC 3 cut(s) 349, 488, 561
SinI GGWCC 2 cut(s) 91, 364
SmiMI CAYNNNNRTG 1 cut(s) 645
Sse9I AATT 6 cut(s) 19, 33, 117, 207, 626, 752
SsiI CCGC 2 cut(s) 362, 714
SspMI CTAG 4 cut(s) 260, 285, 314, 345
StyI CCWWGG 2 cut(s) 229, 747
TaaI ACNGT 5 cut(s) 95, 327, 332, 368, 672
TaqI TCGA 2 cut(s) 17, 580
TasI AATT 6 cut(s) 19, 33, 117, 207, 626, 752
TatI WGTACW 2 cut(s) 519, 601
TauI GCSGC 1 cut(s) 716
TfiI GAWTC 1 cut(s) 704
Tru1I TTAA 2 cut(s) 221, 545
Tru9I TTAA 2 cut(s) 221, 545
TseI GCWGC 3 cut(s) 9, 152, 410
TspDTI ATGAA 2 cut(s) 123, 756
VpaK11BI GGWCC 2 cut(s) 91, 364
XapI RAATTY 2 cut(s) 626, 752
XceI RCATGY 1 cut(s) 565
XcmI CCANNNNNNNNNTGG 1 cut(s) 132
XmiI GTMKAC 2 cut(s) 441, 580
XspI CTAG 4 cut(s) 260, 285, 314, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.