Rh5BG306000

Protein transport protein Sec24-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0009667
Physical Location & Seq
Reverse (-)
39685179 .. 39689522
4344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG306000.1

Sequence Viewer

Length: 621 bp
ATGCTAAGTCGACCATATGCTTTTGGCTGTGTACTGCGATTGAGGACATCATCTGAATTCAAAACTGGTCATTCTTATGGTCACTTCTTTCCAGATCCACAGTATGAGAATGTTCAACACATTATCTGTTGTGATTCTTACGCCACATATGCTTATGACTTTGAGTTTGAAGCTACCAAGGAATTTTCAAAACATGGTTCAGAACCTCCTATTATACAGATTGCGTTTCAATACACAGTCGTTCTGCCTCCTGAGGAGCTCACGGATTCAGGATTGGTTTCCTCAGTTAGAGGCAAGCATTCTCTTAAACGACGATTAAGGATTTGGACTTTGCAATGTGGAGTCGCCCAAAACATGAATGAACTCTATGACAGTGTTGATCCTGAAGTGGTTCTCTCATTACTTGTTCACAAGGTTATATTAGCCTCCTTGGAGCAAGGGGTTCGGGAAGGAGGACTGTTATTGCACGATTGGCTTGTGATTCTGACAGTTCAATACAATGAAGCTCATAAACTTGTTCACTACAAGAACGGAAGTTCAGTGACTGTCCAAATTGATGTTGCATTCTCACAATGCCCCGAACTGCAGCCTTTACCCCGATTAGTTTTTGCATTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

206

Amino Acids

23.39

Weight (kDa)

5.97

Isoelectric Point (pI)

48.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec23_BS PF08033 7 - 79 1.9e-06 Sec23/Sec24 beta-sandwich domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 10
AclWI GGATC 2 cut(s) 89, 374
AcsI RAATTY 2 cut(s) 56, 182
AcuI CTGAAG 1 cut(s) 405
AfaI GTAC 1 cut(s) 33
AgsI TTSAA 6 cut(s) 61, 116, 170, 189, 230, 494
AluBI AGCT 3 cut(s) 173, 259, 506
AluI AGCT 3 cut(s) 173, 259, 506
Alw21I GWGCWC 1 cut(s) 261
AlwI GGATC 2 cut(s) 89, 374
AlwNI CAGNNNCTG 1 cut(s) 545
ApeKI GCWGC 1 cut(s) 586
ApoI RAATTY 2 cut(s) 56, 182
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
Asp700I GAANNNNTTC 1 cut(s) 390
AxyI CCTNAGG 1 cut(s) 252
BanII GRGCYC 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 261
BbvI GCAGC 1 cut(s) 598
BcgI CGANNNNNNTGC 2 cut(s) 425, 459
BfmI CTRYAG 1 cut(s) 584
BisI GCNGC 1 cut(s) 587
BlsI GCNGC 1 cut(s) 588
BsaJI CCNNGG 2 cut(s) 177, 429
Bse1I ACTGG 1 cut(s) 70
Bse21I CCTNAGG 1 cut(s) 252
Bse3DI GCAATG 2 cut(s) 341, 611
BseDI CCNNGG 2 cut(s) 177, 429
BseMI GCAATG 2 cut(s) 341, 611
BseMII CTCAG 2 cut(s) 243, 297
BseNI ACTGG 1 cut(s) 70
BseRI GAGGAG 1 cut(s) 269
BseXI GCAGC 1 cut(s) 598
BsiHKAI GWGCWC 1 cut(s) 261
BsmI GAATGC 2 cut(s) 298, 563
Bsp1286I GDGCHC 1 cut(s) 261
Bsp143I GATC 2 cut(s) 94, 379
BspCNI CTCAG 2 cut(s) 244, 296
BspMAI CTGCAG 1 cut(s) 588
BspPI GGATC 2 cut(s) 89, 374
BsrDI GCAATG 2 cut(s) 341, 611
BsrI ACTGG 1 cut(s) 70
BssECI CCNNGG 2 cut(s) 177, 429
BssMI GATC 2 cut(s) 94, 379
BssT1I CCWWGG 2 cut(s) 177, 429
Bst4CI ACNGT 6 cut(s) 102, 238, 374, 459, 490, 547
BstC8I GCNNGC 1 cut(s) 296
BstDEI CTNAG 3 cut(s) 5, 252, 283
BstKTI GATC 2 cut(s) 97, 382
BstMBI GATC 2 cut(s) 94, 379
BstMWI GCNNNNNNNGC 2 cut(s) 149, 472
BstSFI CTRYAG 1 cut(s) 584
BstV1I GCAGC 1 cut(s) 598
BstX2I RGATCY 1 cut(s) 94
BstYI RGATCY 1 cut(s) 94
Bsu36I CCTNAGG 1 cut(s) 252
BtsIMutI CAGTG 2 cut(s) 379, 546
Cac8I GCNNGC 1 cut(s) 296
CaiI CAGNNNCTG 1 cut(s) 545
Csp6I GTAC 1 cut(s) 32
CviAII CATG 2 cut(s) 194, 355
CviJI RGCY 7 cut(s) 27, 173, 259, 425, 475, 506, 589
CviKI_1 RGCY 7 cut(s) 27, 173, 259, 425, 475, 506, 589
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 3 cut(s) 5, 252, 283
DpnI GATC 2 cut(s) 96, 381
DpnII GATC 2 cut(s) 94, 379
Ecl136II GAGCTC 1 cut(s) 259
Eco130I CCWWGG 2 cut(s) 177, 429
Eco24I GRGCYC 1 cut(s) 261
Eco53kI GAGCTC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 405
Eco81I CCTNAGG 1 cut(s) 252
EcoICRI GAGCTC 1 cut(s) 259
EcoRI GAATTC 1 cut(s) 56
EcoT14I CCWWGG 2 cut(s) 177, 429
EcoT38I GRGCYC 1 cut(s) 261
ErhI CCWWGG 2 cut(s) 177, 429
FaeI CATG 2 cut(s) 197, 358
FatI CATG 2 cut(s) 193, 354
FauNDI CATATG 2 cut(s) 16, 148
FblI GTMKAC 1 cut(s) 10
Fnu4HI GCNGC 1 cut(s) 587
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 1 cut(s) 587
GluI GCNGC 1 cut(s) 587
Hin1II CATG 2 cut(s) 197, 358
HincII GTYRAC 1 cut(s) 11
HindII GTYRAC 1 cut(s) 11
HinfI GANTC 4 cut(s) 134, 266, 342, 481
Hpy166II GTNNAC 4 cut(s) 11, 32, 409, 520
Hpy188I TCNGA 3 cut(s) 55, 202, 486
Hpy188III TCNNGA 5 cut(s) 92, 251, 270, 383, 446
Hpy8I GTNNAC 4 cut(s) 11, 32, 409, 520
Hpy99I CGWCG 1 cut(s) 315
HpyAV CCTTC 1 cut(s) 443
HpyCH4III ACNGT 6 cut(s) 102, 238, 374, 459, 490, 547
HpyCH4V TGCA 5 cut(s) 334, 466, 563, 586, 611
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 472
HpyF3I CTNAG 3 cut(s) 5, 252, 283
Hsp92II CATG 2 cut(s) 197, 358
Kzo9I GATC 2 cut(s) 94, 379
LmnI GCTCC 2 cut(s) 256, 433
LpnPI CCDG 5 cut(s) 51, 105, 255, 264, 396
Lsp1109I GCAGC 1 cut(s) 598
MaeIII GTNAC 2 cut(s) 80, 541
MalI GATC 2 cut(s) 96, 381
MboI GATC 2 cut(s) 94, 379
MflI RGATCY 1 cut(s) 94
MhlI GDGCHC 1 cut(s) 261
MluCI AATT 3 cut(s) 56, 182, 552
MlyI GAGTC 1 cut(s) 351
MnlI CCTC 8 cut(s) 36, 216, 247, 258, 284, 292, 436, 446
MroXI GAANNNNTTC 1 cut(s) 390
MseI TTAA 2 cut(s) 306, 317
MslI CAYNNNNRTG 1 cut(s) 75
Mva1269I GAATGC 2 cut(s) 298, 563
MwoI GCNNNNNNNGC 2 cut(s) 149, 472
NdeI CATATG 2 cut(s) 16, 148
NdeII GATC 2 cut(s) 94, 379
NlaIII CATG 2 cut(s) 197, 358
NmuCI GTSAC 2 cut(s) 80, 541
PctI GAATGC 2 cut(s) 298, 563
PdmI GAANNNNTTC 1 cut(s) 390
PfeI GAWTC 3 cut(s) 134, 266, 481
PkrI GCNGC 1 cut(s) 588
PleI GAGTC 1 cut(s) 350
PpsI GAGTC 1 cut(s) 350
Psp124BI GAGCTC 1 cut(s) 261
PstI CTGCAG 1 cut(s) 588
PstNI CAGNNNCTG 1 cut(s) 545
PsuI RGATCY 1 cut(s) 94
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
RseI CAYNNNNRTG 1 cut(s) 75
SacI GAGCTC 1 cut(s) 261
SalI GTCGAC 1 cut(s) 9
SaqAI TTAA 2 cut(s) 306, 317
SatI GCNGC 1 cut(s) 587
Sau3AI GATC 2 cut(s) 94, 379
SchI GAGTC 1 cut(s) 351
SduI GDGCHC 1 cut(s) 261
SetI ASST 5 cut(s) 175, 208, 261, 417, 508
SfcI CTRYAG 1 cut(s) 584
SmiMI CAYNNNNRTG 1 cut(s) 75
Sse9I AATT 3 cut(s) 56, 182, 552
SstI GAGCTC 1 cut(s) 261
StyI CCWWGG 2 cut(s) 177, 429
TaaI ACNGT 6 cut(s) 102, 238, 374, 459, 490, 547
TaqI TCGA 1 cut(s) 10
TasI AATT 3 cut(s) 56, 182, 552
TatI WGTACW 1 cut(s) 31
TfiI GAWTC 3 cut(s) 134, 266, 481
Tru1I TTAA 2 cut(s) 306, 317
Tru9I TTAA 2 cut(s) 306, 317
TscAI CASTG 2 cut(s) 379, 546
TseFI GTSAC 2 cut(s) 80, 541
TseI GCWGC 1 cut(s) 586
Tsp45I GTSAC 2 cut(s) 80, 541
TspDTI ATGAA 3 cut(s) 371, 375, 516
TspGWI ACGGA 2 cut(s) 278, 546
TspRI CASTG 2 cut(s) 379, 546
XapI RAATTY 2 cut(s) 56, 182
XmiI GTMKAC 1 cut(s) 10
XmnI GAANNNNTTC 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.