Rh1BG053200

Protein transport protein Sec24-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0009667
Physical Location & Seq
Reverse (-)
7524965 .. 7526763
1799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG053200.1

Sequence Viewer

Length: 594 bp
ATGAACATTCCGATGACCGAATCTTCTTCTCGCCGTCAGCTTACAGAAACCGCGATTTCTCGTTCTCTGTACTATCAATTTGGCTCTGTAAAAGGGAAGCAAGTGGAAACTTGTAAGGACCGTATTGGATCAGCACTTGAAACAATTAGACCAACAACTTCATGGGAGAGAACAACAGCAGCAGGGCAAGGAGTAGATGGTGTTTTGATGGGTGGGCGAGGTTTTGGGGTGGCAATTGAAGCCCTTTTAAACTACCTTGGATCTGAATATGGAAGCACATTTGCACTAGGTAGAGTCTTTGCCTTTTTGTCTGGTCCTCCTGACTATGGAGCTGGGCAACTAGATACAAGACGGTACGGTGAACAATATGCTAGTAGAGGAGAGGATGCGGACCGTGCATTGCTTCCTGAGCAGACACCTTTCTATAAAGATTTGGCTGCTGTCGCTGTTCAAGCAGGTGTTTGCGTAGACATCTTTGCTGTTACAAATGAGTATACAGATTTGGCGTCTCTGAAGTTTCTTAGCGTAGAAAGTGGAGGCTCATTGTACTTTTATTCAAATACTGATGATTCAACACTTCCACAGGACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

197

Amino Acids

21.36

Weight (kDa)

4.66

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec23_trunk PF04811 72 - 189 5.1e-20 Sec23/Sec24 trunk domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 446
Acc36I ACCTGC 1 cut(s) 446
AccI GTMKAC 2 cut(s) 468, 494
AccII CGCG 1 cut(s) 53
AciI CCGC 2 cut(s) 51, 389
AclWI GGATC 2 cut(s) 136, 268
AcuI CTGAAG 1 cut(s) 533
AcyI GRCGYC 1 cut(s) 506
AfaI GTAC 3 cut(s) 71, 356, 548
AfiI CCNNNNNNNGG 1 cut(s) 326
AflIII ACRYGT 1 cut(s) 588
AgsI TTSAA 5 cut(s) 140, 239, 452, 558, 573
AluBI AGCT 2 cut(s) 40, 332
AluI AGCT 2 cut(s) 40, 332
Alw26I GTCTC 1 cut(s) 513
AlwI GGATC 2 cut(s) 136, 268
ApeKI GCWGC 2 cut(s) 179, 437
AspS9I GGNCC 3 cut(s) 118, 314, 391
AsuHPI GGTGA 1 cut(s) 371
AvaII GGWCC 3 cut(s) 118, 314, 391
BbvI GCAGC 2 cut(s) 191, 424
BccI CCATC 2 cut(s) 191, 202
BceAI ACGGC 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 513
BfaI CTAG 3 cut(s) 287, 341, 372
BfuAI ACCTGC 1 cut(s) 446
BisI GCNGC 2 cut(s) 180, 438
BlsI GCNGC 2 cut(s) 181, 439
Bme18I GGWCC 3 cut(s) 118, 314, 391
BmgT120I GGNCC 3 cut(s) 118, 314, 391
BmsI GCATC 1 cut(s) 376
Bpu10I CCTNAGC 1 cut(s) 408
BsaHI GRCGYC 1 cut(s) 506
BsaJI CCNNGG 1 cut(s) 256
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse3DI GCAATG 1 cut(s) 398
BseDI CCNNGG 1 cut(s) 256
BseGI GGATG 1 cut(s) 391
BseLI CCNNNNNNNGG 1 cut(s) 326
BseMI GCAATG 1 cut(s) 398
BseMII CTCAG 1 cut(s) 399
BseRI GAGGAG 1 cut(s) 393
BseXI GCAGC 2 cut(s) 191, 424
BseYI CCCAGC 1 cut(s) 332
Bsh1236I CGCG 1 cut(s) 53
BslI CCNNNNNNNGG 1 cut(s) 326
BsmAI GTCTC 1 cut(s) 513
BsmBI CGTCTC 1 cut(s) 513
Bsp143I GATC 2 cut(s) 128, 260
BspACI CCGC 2 cut(s) 51, 389
BspCNI CTCAG 1 cut(s) 400
BspFNI CGCG 1 cut(s) 53
BspMI ACCTGC 1 cut(s) 446
BspPI GGATC 2 cut(s) 136, 268
BsrDI GCAATG 1 cut(s) 398
BssECI CCNNGG 1 cut(s) 256
BssMI GATC 2 cut(s) 128, 260
BssNAI GTATAC 1 cut(s) 495
BssNI GRCGYC 1 cut(s) 506
BssT1I CCWWGG 1 cut(s) 256
Bst1107I GTATAC 1 cut(s) 495
Bst4CI ACNGT 4 cut(s) 122, 354, 359, 395
BstACI GRCGYC 1 cut(s) 506
BstDEI CTNAG 2 cut(s) 408, 521
BstF5I GGATG 1 cut(s) 391
BstFNI CGCG 1 cut(s) 53
BstKTI GATC 2 cut(s) 131, 263
BstMAI GTCTC 1 cut(s) 513
BstMBI GATC 2 cut(s) 128, 260
BstMWI GCNNNNNNNGC 5 cut(s) 239, 395, 409, 443, 452
BstNSI RCATGY 1 cut(s) 592
BstUI CGCG 1 cut(s) 53
BstV1I GCAGC 2 cut(s) 191, 424
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
BstZ17I GTATAC 1 cut(s) 495
BtsCI GGATG 1 cut(s) 391
BveI ACCTGC 1 cut(s) 446
Cfr13I GGNCC 3 cut(s) 118, 314, 391
CpoI CGGWCCG 1 cut(s) 391
CseI GACGC 1 cut(s) 495
Csp6I GTAC 3 cut(s) 70, 355, 547
CspI CGGWCCG 1 cut(s) 391
CviAII CATG 2 cut(s) 162, 589
CviJI RGCY 6 cut(s) 40, 84, 242, 332, 437, 540
CviKI_1 RGCY 6 cut(s) 40, 84, 242, 332, 437, 540
CviQI GTAC 3 cut(s) 70, 355, 547
DdeI CTNAG 2 cut(s) 408, 521
DpnI GATC 2 cut(s) 130, 262
DpnII GATC 2 cut(s) 128, 260
DraI TTTAAA 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 256
Eco47I GGWCC 3 cut(s) 118, 314, 391
Eco57I CTGAAG 1 cut(s) 533
EcoT14I CCWWGG 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 256
Esp3I CGTCTC 1 cut(s) 513
FaeI CATG 2 cut(s) 165, 592
FaiI YATR 7 cut(s) 163, 270, 327, 369, 426, 495, 590
FatI CATG 2 cut(s) 161, 588
FblI GTMKAC 2 cut(s) 468, 494
Fnu4HI GCNGC 2 cut(s) 180, 438
FokI GGATG 1 cut(s) 398
Fsp4HI GCNGC 2 cut(s) 180, 438
FspBI CTAG 3 cut(s) 287, 341, 372
GluI GCNGC 2 cut(s) 180, 438
GsaI CCCAGC 1 cut(s) 336
HgaI GACGC 1 cut(s) 495
Hin1I GRCGYC 1 cut(s) 506
Hin1II CATG 2 cut(s) 165, 592
HinfI GANTC 3 cut(s) 20, 294, 569
HphI GGTGA 1 cut(s) 371
Hpy166II GTNNAC 3 cut(s) 362, 469, 495
Hpy188I TCNGA 3 cut(s) 12, 265, 513
Hpy188III TCNNGA 2 cut(s) 320, 407
Hpy8I GTNNAC 3 cut(s) 362, 469, 495
HpyCH4III ACNGT 4 cut(s) 122, 354, 359, 395
HpyCH4V TGCA 2 cut(s) 284, 398
HpyF10VI GCNNNNNNNGC 5 cut(s) 239, 395, 409, 443, 452
HpyF3I CTNAG 2 cut(s) 408, 521
Hsp92I GRCGYC 1 cut(s) 506
Hsp92II CATG 2 cut(s) 165, 592
Kzo9I GATC 2 cut(s) 128, 260
LmnI GCTCC 1 cut(s) 329
LpnPI CCDG 7 cut(s) 168, 297, 318, 333, 420, 441, 569
Lsp1109I GCAGC 2 cut(s) 191, 424
LweI GCATC 1 cut(s) 376
MaeI CTAG 3 cut(s) 287, 341, 372
MaeIII GTNAC 1 cut(s) 481
MalI GATC 2 cut(s) 130, 262
MboI GATC 2 cut(s) 128, 260
MboII GAAGA 2 cut(s) 15, 18
MfeI CAATTG 1 cut(s) 234
MflI RGATCY 1 cut(s) 260
MluCI AATT 3 cut(s) 77, 144, 234
MlyI GAGTC 1 cut(s) 303
MnlI CCTC 5 cut(s) 212, 327, 371, 376, 530
MseI TTAA 1 cut(s) 248
MslI CAYNNNNRTG 1 cut(s) 11
MunI CAATTG 1 cut(s) 234
MvnI CGCG 1 cut(s) 53
MwoI GCNNNNNNNGC 5 cut(s) 239, 395, 409, 443, 452
NdeII GATC 2 cut(s) 128, 260
NlaIII CATG 2 cut(s) 165, 592
NspI RCATGY 1 cut(s) 592
PaqCI CACCTGC 1 cut(s) 446
PciI ACATGT 1 cut(s) 588
PfeI GAWTC 2 cut(s) 20, 569
PkrI GCNGC 2 cut(s) 181, 439
PleI GAGTC 1 cut(s) 302
PpsI GAGTC 1 cut(s) 302
PscI ACATGT 1 cut(s) 588
PspFI CCCAGC 1 cut(s) 332
PspPI GGNCC 3 cut(s) 118, 314, 391
PsuI RGATCY 1 cut(s) 260
RsaI GTAC 3 cut(s) 71, 356, 548
RsaNI GTAC 3 cut(s) 70, 355, 547
RseI CAYNNNNRTG 1 cut(s) 11
Rsr2I CGGWCCG 1 cut(s) 391
RsrII CGGWCCG 1 cut(s) 391
SaqAI TTAA 1 cut(s) 248
SatI GCNGC 2 cut(s) 180, 438
Sau3AI GATC 2 cut(s) 128, 260
Sau96I GGNCC 3 cut(s) 118, 314, 391
SchI GAGTC 1 cut(s) 303
SetI ASST 7 cut(s) 42, 223, 258, 292, 334, 421, 460
SfaNI GCATC 1 cut(s) 376
SinI GGWCC 3 cut(s) 118, 314, 391
SmiMI CAYNNNNRTG 1 cut(s) 11
Sse9I AATT 3 cut(s) 77, 144, 234
SsiI CCGC 2 cut(s) 51, 389
SspMI CTAG 3 cut(s) 287, 341, 372
StyI CCWWGG 1 cut(s) 256
TaaI ACNGT 4 cut(s) 122, 354, 359, 395
TaqII GACCGA 1 cut(s) 32
TasI AATT 3 cut(s) 77, 144, 234
TatI WGTACW 2 cut(s) 69, 546
TfiI GAWTC 2 cut(s) 20, 569
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TseI GCWGC 2 cut(s) 179, 437
TspDTI ATGAA 2 cut(s) 17, 150
VpaK11BI GGWCC 3 cut(s) 118, 314, 391
XceI RCATGY 1 cut(s) 592
XcmI CCANNNNNNNNNTGG 1 cut(s) 159
XmiI GTMKAC 2 cut(s) 468, 494
XspI CTAG 3 cut(s) 287, 341, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.