Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000164.1

Orthogroup ID

OG0009667

Physical Location & Seq

Genomic Coordinates Reverse (-)

40924 .. 41524

Gene Structure 601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000164.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atgggtgggcgaggttttgaggtggcaattgaagcccttttaaactaccttggatctgaatatggaagcacatttgcactaggtagagtctttgcttttttgtcgggtcctcttgactatggagctgggcaactagatacaagacggtacgatgaacaatatgctagtagaggagaggatgcggaccgtgcattgcttcctgagcagacacctttctataaagatttggctgttgtcgctgttcaagcaggtgtttgcgtagacatctttgctgttacaaatgagtatacagatttggcgtctctgaagtttcttagtgtagaaagtggaggctcattgtacttttattcaaatactgatgattcaacacttccacaggacatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

128

Amino Acids

13.95

Weight (kDa)

4.09

Isoelectric Point (pI)

35.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009667)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g24980
rosa_chinensis	RchiOBHm_Chr1g0324351 RchiOBHm_Chr5g0016621 RchiOBHm_Chr5g0016631 RchiOBHm_Chr5g0040971 RchiOBHm_Chr5g0044471 RchiOBHm_Chr5g0044481
rosa_multiflora	Rmu_co8474103.1_g000001 Rmu_sc0000164.1_g000005 Rmu_sc0006669.1_g000015 Rmu_sc0006888.1_g000009 Rmu_sc0035804.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036210 Rroxscaffold_5G00347560
rosa_rugosa	Rorug02G0107000
rosa_samantha	Rh1BG053200 Rh1DG100100 Rh5AG298800 Rh5BG306000 Rh5CG138700 Rh5DG315300
rosa_wichuraiana	Rw2G010480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	239
Acc36I	ACCTGC	1 cut(s)	239
AccI	GTMKAC	2 cut(s)	261, 287
AciI	CCGC	1 cut(s)	182
AclWI	GGATC	1 cut(s)	61
AcuI	CTGAAG	1 cut(s)	326
AcyI	GRCGYC	1 cut(s)	299
AfaI	GTAC	2 cut(s)	149, 341
AflIII	ACRYGT	1 cut(s)	381
AgsI	TTSAA	4 cut(s)	32, 245, 351, 366
AluBI	AGCT	1 cut(s)	125
AluI	AGCT	1 cut(s)	125
Alw26I	GTCTC	1 cut(s)	306
AlwI	GGATC	1 cut(s)	61
AspS9I	GGNCC	2 cut(s)	107, 184
AvaII	GGWCC	2 cut(s)	107, 184
BcoDI	GTCTC	1 cut(s)	306
BfaI	CTAG	3 cut(s)	80, 134, 165
BfuAI	ACCTGC	1 cut(s)	239
Bme18I	GGWCC	2 cut(s)	107, 184
BmgT120I	GGNCC	2 cut(s)	107, 184
BmiI	GGNNCC	1 cut(s)	108
BmsI	GCATC	1 cut(s)	169
Bpu10I	CCTNAGC	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	299
BsaJI	CCNNGG	1 cut(s)	49
Bse3DI	GCAATG	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	1 cut(s)	184
BseMI	GCAATG	1 cut(s)	191
BseMII	CTCAG	1 cut(s)	192
BseRI	GAGGAG	1 cut(s)	186
BseYI	CCCAGC	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	306
BsmBI	CGTCTC	1 cut(s)	306
Bsp143I	GATC	1 cut(s)	53
BspACI	CCGC	1 cut(s)	182
BspCNI	CTCAG	1 cut(s)	193
BspLI	GGNNCC	1 cut(s)	108
BspMI	ACCTGC	1 cut(s)	239
BspPI	GGATC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	1 cut(s)	53
BssNAI	GTATAC	1 cut(s)	288
BssNI	GRCGYC	1 cut(s)	299
BssT1I	CCWWGG	1 cut(s)	49
Bst1107I	GTATAC	1 cut(s)	288
Bst4CI	ACNGT	2 cut(s)	147, 188
BstACI	GRCGYC	1 cut(s)	299
BstDEI	CTNAG	2 cut(s)	201, 314
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	1 cut(s)	56
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	1 cut(s)	53
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 188, 202, 236, 245
BstNSI	RCATGY	1 cut(s)	385
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
BstZ17I	GTATAC	1 cut(s)	288
BtsCI	GGATG	1 cut(s)	184
BveI	ACCTGC	1 cut(s)	239
Cfr13I	GGNCC	2 cut(s)	107, 184
CpoI	CGGWCCG	1 cut(s)	184
CseI	GACGC	1 cut(s)	288
Csp6I	GTAC	2 cut(s)	148, 340
CspI	CGGWCCG	1 cut(s)	184
CviAII	CATG	1 cut(s)	382
CviJI	RGCY	4 cut(s)	35, 125, 230, 333
CviKI_1	RGCY	4 cut(s)	35, 125, 230, 333
CviQI	GTAC	2 cut(s)	148, 340
DdeI	CTNAG	2 cut(s)	201, 314
DpnI	GATC	1 cut(s)	55
DpnII	GATC	1 cut(s)	53
DraI	TTTAAA	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	49
Eco47I	GGWCC	2 cut(s)	107, 184
Eco57I	CTGAAG	1 cut(s)	326
EcoO109I	RGGNCCY	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	49
Esp3I	CGTCTC	1 cut(s)	306
FaeI	CATG	1 cut(s)	385
FaiI	YATR	6 cut(s)	63, 120, 162, 219, 288, 383
FatI	CATG	1 cut(s)	381
FblI	GTMKAC	2 cut(s)	261, 287
FokI	GGATG	1 cut(s)	191
FspBI	CTAG	3 cut(s)	80, 134, 165
GsaI	CCCAGC	1 cut(s)	129
HgaI	GACGC	1 cut(s)	288
Hin1I	GRCGYC	1 cut(s)	299
Hin1II	CATG	1 cut(s)	385
HinfI	GANTC	2 cut(s)	87, 362
Hpy166II	GTNNAC	2 cut(s)	262, 288
Hpy188I	TCNGA	2 cut(s)	58, 306
Hpy188III	TCNNGA	2 cut(s)	113, 200
Hpy8I	GTNNAC	2 cut(s)	262, 288
HpyCH4III	ACNGT	2 cut(s)	147, 188
HpyCH4V	TGCA	2 cut(s)	77, 191
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 188, 202, 236, 245
HpyF3I	CTNAG	2 cut(s)	201, 314
Hsp92I	GRCGYC	1 cut(s)	299
Hsp92II	CATG	1 cut(s)	385
Kzo9I	GATC	1 cut(s)	53
LmnI	GCTCC	1 cut(s)	122
LpnPI	CCDG	4 cut(s)	111, 213, 234, 362
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	3 cut(s)	80, 134, 165
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	1 cut(s)	55
MboI	GATC	1 cut(s)	53
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	1 cut(s)	53
MluCI	AATT	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	96
MnlI	CCTC	6 cut(s)	5, 13, 120, 164, 169, 323
MseI	TTAA	1 cut(s)	41
MunI	CAATTG	1 cut(s)	27
MwoI	GCNNNNNNNGC	5 cut(s)	32, 188, 202, 236, 245
NdeII	GATC	1 cut(s)	53
NlaIII	CATG	1 cut(s)	385
NlaIV	GGNNCC	1 cut(s)	108
NspI	RCATGY	1 cut(s)	385
PaqCI	CACCTGC	1 cut(s)	239
PciI	ACATGT	1 cut(s)	381
PfeI	GAWTC	1 cut(s)	362
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
PpuMI	RGGWCCY	1 cut(s)	107
PscI	ACATGT	1 cut(s)	381
Psp5II	RGGWCCY	1 cut(s)	107
PspFI	CCCAGC	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	108
PspPI	GGNCC	2 cut(s)	107, 184
PspPPI	RGGWCCY	1 cut(s)	107
PsuI	RGATCY	1 cut(s)	53
RsaI	GTAC	2 cut(s)	149, 341
RsaNI	GTAC	2 cut(s)	148, 340
Rsr2I	CGGWCCG	1 cut(s)	184
RsrII	CGGWCCG	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	41
Sau3AI	GATC	1 cut(s)	53
Sau96I	GGNCC	2 cut(s)	107, 184
SchI	GAGTC	1 cut(s)	96
SetI	ASST	7 cut(s)	16, 24, 51, 85, 127, 214, 253
SfaNI	GCATC	1 cut(s)	169
SinI	GGWCC	2 cut(s)	107, 184
Sse9I	AATT	1 cut(s)	27
SsiI	CCGC	1 cut(s)	182
SspMI	CTAG	3 cut(s)	80, 134, 165
StyI	CCWWGG	1 cut(s)	49
TaaI	ACNGT	2 cut(s)	147, 188
TasI	AATT	1 cut(s)	27
TatI	WGTACW	1 cut(s)	339
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TspDTI	ATGAA	1 cut(s)	168
VpaK11BI	GGWCC	2 cut(s)	107, 184
XceI	RCATGY	1 cut(s)	385
XmiI	GTMKAC	2 cut(s)	261, 287
XspI	CTAG	3 cut(s)	80, 134, 165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.