Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0009667

Physical Location & Seq

Genomic Coordinates Reverse (-)

19079542 .. 19082103

Gene Structure 2562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00347560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGTGAAAATCCTCATCAAAAGGCTGCATTCTCGTGTTGACAAGAGTCTTTCCGAGGTTAATGCTGGTCGCATTGCAACTGCTATTCAACATCATGGGAAGGCTGTGCAATTTCGCTCGTGTGAGAGGTTAAAATTTGTCTGGAGGGAAGAACGAGAGGACATGTACCGGATGCTAAGTCGACCATATGCTTTTGGTCGTGTACCGCGATTGAGGACATCATCCGAATTCAAAACTGGTCATTCTTATGGTCACTTCTTTCCGGATCCACGGTATGAGAATGTTCAACACATTATCTGTTGTGATTCCTACGCCACATATGCTTATGACTTTGAGTTTGAAGCTACCAAGGAATTTTCAAAACATGGATCATGGTGGACATGGGGCATTTTCCAACGAGGTGATCAATGGATTGACTTGGCGGACGATGGTGAATCGTTGATTGGGCTGTTAAGAAGACGCAGCGGGATTAGAGGGGCTCAAACACCAAGAGCTGGGACTGAGATCACTGAAAGCAGCATTGGAACTATTGTTGCTGCCGTTCCTACTTCGGAGCTTCCCGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

188

Amino Acids

21.67

Weight (kDa)

9.03

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009667)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g24980
rosa_chinensis	RchiOBHm_Chr1g0324351 RchiOBHm_Chr5g0016621 RchiOBHm_Chr5g0016631 RchiOBHm_Chr5g0040971 RchiOBHm_Chr5g0044471 RchiOBHm_Chr5g0044481
rosa_multiflora	Rmu_co8474103.1_g000001 Rmu_sc0000164.1_g000005 Rmu_sc0006669.1_g000015 Rmu_sc0006888.1_g000009 Rmu_sc0035804.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036210 Rroxscaffold_5G00347560
rosa_rugosa	Rorug02G0107000
rosa_samantha	Rh1BG053200 Rh1DG100100 Rh5AG298800 Rh5BG306000 Rh5CG138700 Rh5DG315300
rosa_wichuraiana	Rw2G010480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	494
AccI	GTMKAC	1 cut(s)	181
AccII	CGCG	1 cut(s)	208
AccIII	TCCGGA	1 cut(s)	262
AciI	CCGC	3 cut(s)	206, 422, 465
AclWI	GGATC	3 cut(s)	260, 273, 376
AcsI	RAATTY	3 cut(s)	134, 227, 353
AfaI	GTAC	2 cut(s)	167, 204
AfiI	CCNNNNNNNGG	1 cut(s)	494
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	5 cut(s)	89, 232, 287, 341, 360
AjuI	GAANNNNNNNTTGG	4 cut(s)	426, 458, 504, 536
AluBI	AGCT	3 cut(s)	344, 494, 556
AluI	AGCT	3 cut(s)	344, 494, 556
AlwI	GGATC	3 cut(s)	260, 273, 376
Aor13HI	TCCGGA	1 cut(s)	262
ApeKI	GCWGC	4 cut(s)	25, 462, 516, 536
ApoI	RAATTY	3 cut(s)	134, 227, 353
ArsI	GACNNNNNNTTYG	2 cut(s)	320, 352
AsuHPI	GGTGA	3 cut(s)	16, 413, 443
BamHI	GGATCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	481
BauI	CACGAG	2 cut(s)	33, 118
BbsI	GAAGAC	1 cut(s)	463
BbvI	GCAGC	4 cut(s)	12, 474, 523, 528
BccI	CCATC	1 cut(s)	422
BceAI	ACGGC	1 cut(s)	524
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BclI	TGATCA	1 cut(s)	403
BisI	GCNGC	4 cut(s)	26, 463, 517, 537
BlsI	GCNGC	4 cut(s)	27, 464, 518, 538
BmiI	GGNNCC	1 cut(s)	267
BmsI	GCATC	1 cut(s)	162
BoxI	GACNNNNGTC	1 cut(s)	45
BpiI	GAAGAC	1 cut(s)	463
BpmI	CTGGAG	1 cut(s)	163
BsaJI	CCNNGG	3 cut(s)	54, 269, 348
BsaWI	WCCGGW	2 cut(s)	168, 262
Bsc4I	CCNNNNNNNGG	1 cut(s)	494
Bse1I	ACTGG	1 cut(s)	241
Bse3DI	GCAATG	1 cut(s)	72
BseAI	TCCGGA	1 cut(s)	262
BseDI	CCNNGG	3 cut(s)	54, 269, 348
BseGI	GGATG	2 cut(s)	177, 221
BseLI	CCNNNNNNNGG	1 cut(s)	494
BseMI	GCAATG	1 cut(s)	72
BseMII	CTCAG	1 cut(s)	492
BseNI	ACTGG	1 cut(s)	241
BseXI	GCAGC	4 cut(s)	12, 474, 523, 528
BseYI	CCCAGC	1 cut(s)	494
Bsh1236I	CGCG	1 cut(s)	208
BsiSI	CCGG	2 cut(s)	169, 263
BslFI	GGGAC	1 cut(s)	511
BslI	CCNNNNNNNGG	1 cut(s)	494
BsmFI	GGGAC	1 cut(s)	511
BsmI	GAATGC	1 cut(s)	28
Bsp1286I	GDGCHC	1 cut(s)	481
Bsp13I	TCCGGA	1 cut(s)	262
Bsp143I	GATC	4 cut(s)	265, 368, 403, 504
BspACI	CCGC	3 cut(s)	206, 422, 465
BspCNI	CTCAG	1 cut(s)	493
BspEI	TCCGGA	1 cut(s)	262
BspFNI	CGCG	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	267
BspPI	GGATC	3 cut(s)	260, 273, 376
BsrDI	GCAATG	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	3 cut(s)	54, 269, 348
BssMI	GATC	4 cut(s)	265, 368, 403, 504
BssSI	CACGAG	2 cut(s)	33, 118
BssT1I	CCWWGG	1 cut(s)	348
Bst2BI	CACGAG	2 cut(s)	33, 118
Bst4CI	ACNGT	1 cut(s)	273
BstDEI	CTNAG	2 cut(s)	176, 501
BstDSI	CCRYGG	1 cut(s)	269
BstF5I	GGATG	2 cut(s)	177, 221
BstFNI	CGCG	1 cut(s)	208
BstKTI	GATC	4 cut(s)	268, 371, 406, 507
BstMBI	GATC	4 cut(s)	265, 368, 403, 504
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstNSI	RCATGY	1 cut(s)	166
BstPAI	GACNNNNGTC	1 cut(s)	45
BstUI	CGCG	1 cut(s)	208
BstV1I	GCAGC	4 cut(s)	12, 474, 523, 528
BstV2I	GAAGAC	1 cut(s)	463
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
BtgI	CCRYGG	1 cut(s)	269
BtsCI	GGATG	2 cut(s)	177, 221
BtsIMutI	CAGTG	1 cut(s)	507
CseI	GACGC	1 cut(s)	468
Csp6I	GTAC	2 cut(s)	166, 203
CviAII	CATG	5 cut(s)	95, 163, 365, 372, 381
CviJI	RGCY	7 cut(s)	25, 104, 344, 448, 479, 494, 556
CviKI_1	RGCY	7 cut(s)	25, 104, 344, 448, 479, 494, 556
CviQI	GTAC	2 cut(s)	166, 203
DdeI	CTNAG	2 cut(s)	176, 501
DpnI	GATC	4 cut(s)	267, 370, 405, 506
DpnII	GATC	4 cut(s)	265, 368, 403, 504
EciI	GGCGGA	1 cut(s)	437
Eco130I	CCWWGG	1 cut(s)	348
Eco24I	GRGCYC	1 cut(s)	481
EcoRI	GAATTC	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	348
EcoT38I	GRGCYC	1 cut(s)	481
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	5 cut(s)	98, 166, 368, 375, 384
FaqI	GGGAC	1 cut(s)	511
FatI	CATG	5 cut(s)	94, 162, 364, 371, 380
FauI	CCCGC	1 cut(s)	458
FauNDI	CATATG	2 cut(s)	187, 319
FbaI	TGATCA	1 cut(s)	403
FblI	GTMKAC	1 cut(s)	181
Fnu4HI	GCNGC	4 cut(s)	26, 463, 517, 537
FokI	GGATG	2 cut(s)	184, 208
FriOI	GRGCYC	1 cut(s)	481
Fsp4HI	GCNGC	4 cut(s)	26, 463, 517, 537
GluI	GCNGC	4 cut(s)	26, 463, 517, 537
GsaI	CCCAGC	1 cut(s)	498
GsuI	CTGGAG	1 cut(s)	163
HapII	CCGG	2 cut(s)	169, 263
HgaI	GACGC	1 cut(s)	468
Hin1II	CATG	5 cut(s)	98, 166, 368, 375, 384
HincII	GTYRAC	2 cut(s)	40, 182
HindII	GTYRAC	2 cut(s)	40, 182
HinfI	GANTC	3 cut(s)	46, 305, 434
HpaII	CCGG	2 cut(s)	169, 263
HphI	GGTGA	3 cut(s)	16, 413, 443
Hpy166II	GTNNAC	4 cut(s)	40, 182, 203, 378
Hpy188I	TCNGA	3 cut(s)	55, 226, 553
Hpy188III	TCNNGA	2 cut(s)	142, 263
Hpy8I	GTNNAC	4 cut(s)	40, 182, 203, 378
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	273
HpyCH4V	TGCA	3 cut(s)	28, 77, 109
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpyF3I	CTNAG	2 cut(s)	176, 501
Hsp92II	CATG	5 cut(s)	98, 166, 368, 375, 384
Kpn2I	TCCGGA	1 cut(s)	262
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	4 cut(s)	265, 368, 403, 504
LmnI	GCTCC	1 cut(s)	553
LpnPI	CCDG	6 cut(s)	51, 127, 182, 222, 276, 480
Lsp1109I	GCAGC	4 cut(s)	12, 474, 523, 528
LweI	GCATC	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	4 cut(s)	267, 370, 405, 506
MboI	GATC	4 cut(s)	265, 368, 403, 504
MboII	GAAGA	2 cut(s)	161, 468
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	1 cut(s)	481
MluCI	AATT	4 cut(s)	110, 134, 227, 353
MlyI	GAGTC	1 cut(s)	55
MmeI	TCCRAC	1 cut(s)	418
MnlI	CCTC	8 cut(s)	23, 49, 120, 138, 151, 207, 392, 467
MroI	TCCGGA	1 cut(s)	262
MseI	TTAA	3 cut(s)	60, 131, 452
MslI	CAYNNNNRTG	2 cut(s)	33, 246
MspA1I	CMGCKG	1 cut(s)	465
MspI	CCGG	2 cut(s)	169, 263
Mva1269I	GAATGC	1 cut(s)	28
MvnI	CGCG	1 cut(s)	208
MwoI	GCNNNNNNNGC	1 cut(s)	320
NdeI	CATATG	2 cut(s)	187, 319
NdeII	GATC	4 cut(s)	265, 368, 403, 504
NlaIII	CATG	5 cut(s)	98, 166, 368, 375, 384
NlaIV	GGNNCC	1 cut(s)	267
NmuCI	GTSAC	1 cut(s)	251
NspI	RCATGY	1 cut(s)	166
PciI	ACATGT	1 cut(s)	162
PcsI	WCGNNNNNNNCGW	1 cut(s)	205
PctI	GAATGC	1 cut(s)	28
PfeI	GAWTC	2 cut(s)	305, 434
PflMI	CCANNNNNTGG	1 cut(s)	494
PkrI	GCNGC	4 cut(s)	27, 464, 518, 538
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
PscI	ACATGT	1 cut(s)	162
PshAI	GACNNNNGTC	1 cut(s)	45
PspFI	CCCAGC	1 cut(s)	494
PspN4I	GGNNCC	1 cut(s)	267
PsuI	RGATCY	1 cut(s)	265
RsaI	GTAC	2 cut(s)	167, 204
RsaNI	GTAC	2 cut(s)	166, 203
RseI	CAYNNNNRTG	2 cut(s)	33, 246
SalI	GTCGAC	1 cut(s)	180
SaqAI	TTAA	3 cut(s)	60, 131, 452
SatI	GCNGC	4 cut(s)	26, 463, 517, 537
Sau3AI	GATC	4 cut(s)	265, 368, 403, 504
SchI	GAGTC	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	481
SetI	ASST	6 cut(s)	60, 131, 346, 403, 496, 558
SfaNI	GCATC	1 cut(s)	162
SmiMI	CAYNNNNRTG	2 cut(s)	33, 246
Sse9I	AATT	4 cut(s)	110, 134, 227, 353
SsiI	CCGC	3 cut(s)	206, 422, 465
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	1 cut(s)	273
TaqI	TCGA	1 cut(s)	181
TasI	AATT	4 cut(s)	110, 134, 227, 353
TfiI	GAWTC	2 cut(s)	305, 434
Tru1I	TTAA	3 cut(s)	60, 131, 452
Tru9I	TTAA	3 cut(s)	60, 131, 452
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	4 cut(s)	25, 462, 516, 536
Tsp45I	GTSAC	1 cut(s)	251
TspRI	CASTG	1 cut(s)	514
Van91I	CCANNNNNTGG	1 cut(s)	494
XapI	RAATTY	3 cut(s)	134, 227, 353
XceI	RCATGY	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.