Rh1DG100100

Protein transport protein Sec24-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0009667
Physical Location & Seq
Forward (+)
18794490 .. 18797385
2896 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG100100.1

Sequence Viewer

Length: 639 bp
ATGAATTCCAAAGTGGAAACTTGTAAGGACCGTATTGGATCAGCACTTGAAACAATTAGACCAACAACTTCATGGGAGAGAACAACAGCAGCAGGGCAAGGAGTAGATGGTGTTTTGATGGGTGGGCGAGGTTTTGGGGTGGCAATTGAAGCCCTTTTAAACTACCTTGGATCTCAATATGGAAGCACATTTGCACTAGGTAGAGTCTTTGCCTTTTTGTCTGGTCCTCCTGACTATGGAGCTGGGCAACTAGATATAAGACGGTACAGTGAACAATATGCTAGTAGAGGAGAGGATGTGGACCGTGCATTGCTTCCTGAGCGGACACCTTTCTATAAAGATTTGCCTGCTGTCGCTGTTCAAGCAAGTGTTTGCGTAGACATCTTTGCTGTTACAAATGAGTATACAGATTTGGCGTCTCTGAAGTTTCTTAGCGTAGAAAGTGGAGGCTCATCGTACTTTTATTCAAATACTGATGATTCAACACTTCCACAGGATATGTACCGGATGCTAAGTCGACCATATGCTTTTGGCTGTGTACTGCGATTGAGGACATCATCTGAATTCAAAATTGGTCATTCTGTTCTCATGGCAAAAAGAGCAAAGCAAATGAAAGCAAGTGCAAAGCTCACAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

212

Amino Acids

23.21

Weight (kDa)

8.7

Isoelectric Point (pI)

35.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec23_trunk PF04811 42 - 170 2.2e-17 Sec23/Sec24 trunk domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 322
AccI GTMKAC 3 cut(s) 378, 404, 517
AciI CCGC 1 cut(s) 322
AclWI GGATC 2 cut(s) 46, 178
AcsI RAATTY 2 cut(s) 4, 563
AcuI CTGAAG 1 cut(s) 443
AcyI GRCGYC 1 cut(s) 416
AfaI GTAC 4 cut(s) 266, 458, 503, 540
AfiI CCNNNNNNNGG 1 cut(s) 236
AgsI TTSAA 6 cut(s) 50, 149, 362, 468, 483, 568
AjuI GAANNNNNNNTTGG 2 cut(s) 555, 587
AluBI AGCT 2 cut(s) 242, 628
AluI AGCT 2 cut(s) 242, 628
Alw26I GTCTC 1 cut(s) 423
AlwI GGATC 2 cut(s) 46, 178
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 2 cut(s) 4, 563
AspS9I GGNCC 3 cut(s) 28, 224, 301
AvaII GGWCC 3 cut(s) 28, 224, 301
BbvI GCAGC 1 cut(s) 101
BccI CCATC 2 cut(s) 101, 112
BcoDI GTCTC 1 cut(s) 423
BfaI CTAG 3 cut(s) 197, 251, 282
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme18I GGWCC 3 cut(s) 28, 224, 301
BmgT120I GGNCC 3 cut(s) 28, 224, 301
BmsI GCATC 1 cut(s) 498
Bpu10I CCTNAGC 1 cut(s) 318
BsaHI GRCGYC 1 cut(s) 416
BsaJI CCNNGG 1 cut(s) 166
BsaWI WCCGGW 1 cut(s) 504
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse3DI GCAATG 1 cut(s) 308
BseDI CCNNGG 1 cut(s) 166
BseGI GGATG 2 cut(s) 301, 513
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMI GCAATG 1 cut(s) 308
BseMII CTCAG 1 cut(s) 309
BseRI GAGGAG 1 cut(s) 303
BseXI GCAGC 1 cut(s) 101
BseYI CCCAGC 1 cut(s) 242
BsiSI CCGG 1 cut(s) 505
BslI CCNNNNNNNGG 1 cut(s) 236
BsmAI GTCTC 1 cut(s) 423
BsmBI CGTCTC 1 cut(s) 423
Bsp143I GATC 2 cut(s) 38, 170
BspACI CCGC 1 cut(s) 322
BspCNI CTCAG 1 cut(s) 310
BspPI GGATC 2 cut(s) 46, 178
BsrBI CCGCTC 1 cut(s) 322
BsrDI GCAATG 1 cut(s) 308
BssECI CCNNGG 1 cut(s) 166
BssMI GATC 2 cut(s) 38, 170
BssNAI GTATAC 1 cut(s) 405
BssNI GRCGYC 1 cut(s) 416
BssT1I CCWWGG 1 cut(s) 166
Bst1107I GTATAC 1 cut(s) 405
Bst4CI ACNGT 4 cut(s) 32, 264, 269, 305
BstACI GRCGYC 1 cut(s) 416
BstC8I GCNNGC 1 cut(s) 348
BstDEI CTNAG 3 cut(s) 318, 431, 512
BstF5I GGATG 2 cut(s) 301, 513
BstKTI GATC 2 cut(s) 41, 173
BstMAI GTCTC 1 cut(s) 423
BstMBI GATC 2 cut(s) 38, 170
BstMWI GCNNNNNNNGC 4 cut(s) 149, 319, 362, 599
BstV1I GCAGC 1 cut(s) 101
BstX2I RGATCY 1 cut(s) 170
BstYI RGATCY 1 cut(s) 170
BstZ17I GTATAC 1 cut(s) 405
BtsCI GGATG 2 cut(s) 301, 513
BtsIMutI CAGTG 1 cut(s) 274
Cac8I GCNNGC 1 cut(s) 348
Cfr13I GGNCC 3 cut(s) 28, 224, 301
CseI GACGC 1 cut(s) 405
Csp6I GTAC 4 cut(s) 265, 457, 502, 539
CviAII CATG 2 cut(s) 72, 589
CviJI RGCY 5 cut(s) 152, 242, 450, 534, 628
CviKI_1 RGCY 5 cut(s) 152, 242, 450, 534, 628
CviQI GTAC 4 cut(s) 265, 457, 502, 539
DdeI CTNAG 3 cut(s) 318, 431, 512
DpnI GATC 2 cut(s) 40, 172
DpnII GATC 2 cut(s) 38, 170
DraI TTTAAA 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 166
Eco47I GGWCC 3 cut(s) 28, 224, 301
Eco57I CTGAAG 1 cut(s) 443
EcoRI GAATTC 2 cut(s) 4, 563
EcoT14I CCWWGG 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 166
Esp3I CGTCTC 1 cut(s) 423
FaeI CATG 2 cut(s) 75, 592
FatI CATG 2 cut(s) 71, 588
FauNDI CATATG 1 cut(s) 523
FblI GTMKAC 3 cut(s) 378, 404, 517
Fnu4HI GCNGC 1 cut(s) 90
FokI GGATG 2 cut(s) 308, 520
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 3 cut(s) 197, 251, 282
GluI GCNGC 1 cut(s) 90
GsaI CCCAGC 1 cut(s) 246
HapII CCGG 1 cut(s) 505
HgaI GACGC 1 cut(s) 405
Hin1I GRCGYC 1 cut(s) 416
Hin1II CATG 2 cut(s) 75, 592
HincII GTYRAC 1 cut(s) 518
HindII GTYRAC 1 cut(s) 518
HinfI GANTC 2 cut(s) 204, 479
HpaII CCGG 1 cut(s) 505
Hpy166II GTNNAC 6 cut(s) 272, 301, 379, 405, 518, 539
Hpy188I TCNGA 2 cut(s) 423, 562
Hpy188III TCNNGA 2 cut(s) 230, 317
Hpy8I GTNNAC 6 cut(s) 272, 301, 379, 405, 518, 539
HpyCH4III ACNGT 4 cut(s) 32, 264, 269, 305
HpyCH4V TGCA 3 cut(s) 194, 308, 623
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 319, 362, 599
HpyF3I CTNAG 3 cut(s) 318, 431, 512
Hsp92I GRCGYC 1 cut(s) 416
Hsp92II CATG 2 cut(s) 75, 592
Kzo9I GATC 2 cut(s) 38, 170
LmnI GCTCC 1 cut(s) 239
LpnPI CCDG 8 cut(s) 78, 207, 228, 243, 330, 360, 479, 518
Lsp1109I GCAGC 1 cut(s) 101
LweI GCATC 1 cut(s) 498
MaeI CTAG 3 cut(s) 197, 251, 282
MaeIII GTNAC 1 cut(s) 391
MalI GATC 2 cut(s) 40, 172
MbiI CCGCTC 1 cut(s) 322
MboI GATC 2 cut(s) 38, 170
MfeI CAATTG 1 cut(s) 144
MflI RGATCY 1 cut(s) 170
MluCI AATT 5 cut(s) 4, 54, 144, 563, 570
MlyI GAGTC 1 cut(s) 213
MnlI CCTC 6 cut(s) 122, 237, 281, 286, 440, 543
MseI TTAA 1 cut(s) 158
MspI CCGG 1 cut(s) 505
MunI CAATTG 1 cut(s) 144
MwoI GCNNNNNNNGC 4 cut(s) 149, 319, 362, 599
NdeI CATATG 1 cut(s) 523
NdeII GATC 2 cut(s) 38, 170
NlaIII CATG 2 cut(s) 75, 592
PfeI GAWTC 1 cut(s) 479
PkrI GCNGC 1 cut(s) 91
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
PspFI CCCAGC 1 cut(s) 242
PspPI GGNCC 3 cut(s) 28, 224, 301
PsuI RGATCY 1 cut(s) 170
RsaI GTAC 4 cut(s) 266, 458, 503, 540
RsaNI GTAC 4 cut(s) 265, 457, 502, 539
SalI GTCGAC 1 cut(s) 516
SaqAI TTAA 1 cut(s) 158
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 2 cut(s) 38, 170
Sau96I GGNCC 3 cut(s) 28, 224, 301
SchI GAGTC 1 cut(s) 213
SetI ASST 6 cut(s) 133, 168, 202, 244, 331, 630
SfaNI GCATC 1 cut(s) 498
SinI GGWCC 3 cut(s) 28, 224, 301
Sse9I AATT 5 cut(s) 4, 54, 144, 563, 570
SsiI CCGC 1 cut(s) 322
SspMI CTAG 3 cut(s) 197, 251, 282
StyI CCWWGG 1 cut(s) 166
TaaI ACNGT 4 cut(s) 32, 264, 269, 305
TaqI TCGA 1 cut(s) 517
TasI AATT 5 cut(s) 4, 54, 144, 563, 570
TatI WGTACW 1 cut(s) 538
TfiI GAWTC 1 cut(s) 479
Tru1I TTAA 1 cut(s) 158
Tru9I TTAA 1 cut(s) 158
TscAI CASTG 1 cut(s) 274
TseI GCWGC 1 cut(s) 89
TspDTI ATGAA 3 cut(s) 17, 60, 626
TspRI CASTG 1 cut(s) 274
VpaK11BI GGWCC 3 cut(s) 28, 224, 301
XapI RAATTY 2 cut(s) 4, 563
XcmI CCANNNNNNNNNTGG 1 cut(s) 69
XmiI GTMKAC 3 cut(s) 378, 404, 517
XspI CTAG 3 cut(s) 197, 251, 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.