Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006888.1

Orthogroup ID

OG0009667

Physical Location & Seq

Genomic Coordinates Reverse (-)

36134 .. 39453

Gene Structure 3320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006888.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

atgatcgaatcttcttctcaccgtcagcttacaggtgactctttgattttcagctttctgtgtaatgtggctcttggttgtattcgtgttctgattttggaaaccgcgatttctcgttctctgtaccatcaatttggctctgtaaaagggaagcaagtgcatactggactcggccacagcttcagtttcagtcaaccctgtgtggaaacttgtaaggacagaattggagcagcacttgaaacaattagaccaacaactttatgggagagaacaacagcagcagggcaaggagtagatggtgttttgatgggtgggcgaggttttggggtggcaattgaagcccttttaaactaccttggatctgaatatggaagcacatttgcactaggtagagtctttgcctttttgtctggtcctcctgactatggagctgggcaactagatacaagactgttcggtgaacaatatgctagtagaggagaggatgcggaccgttcattgcttcctgagcagacacctttctataaagatttggctgctgtcgctgttcaagcagaaagtagaggctcattgtacttttattcaaatactgatgattcaacacttccacaggacatgtaccggatgctaagtcgaccatatgcttttggctgtgtactgcgattgaggacatcatctgaattcaaaacttgtcattcttatggtcacttctttccagatccacagtacgagaatgttcaacacattatctgttgtgattcttacgccacatatgcttatgactttgagtttgaagataccaaggaatttgcaaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

272

Amino Acids

30.19

Weight (kDa)

5.37

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009667)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g24980
rosa_chinensis	RchiOBHm_Chr1g0324351 RchiOBHm_Chr5g0016621 RchiOBHm_Chr5g0016631 RchiOBHm_Chr5g0040971 RchiOBHm_Chr5g0044471 RchiOBHm_Chr5g0044481
rosa_multiflora	Rmu_co8474103.1_g000001 Rmu_sc0000164.1_g000005 Rmu_sc0006669.1_g000015 Rmu_sc0006888.1_g000009 Rmu_sc0035804.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036210 Rroxscaffold_5G00347560
rosa_rugosa	Rorug02G0107000
rosa_samantha	Rh1BG053200 Rh1DG100100 Rh5AG298800 Rh5BG306000 Rh5CG138700 Rh5DG315300
rosa_wichuraiana	Rw2G010480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	634
AccII	CGCG	1 cut(s)	107
AciI	CCGC	2 cut(s)	105, 488
AclWI	GGATC	2 cut(s)	367, 713
AcoI	YGGCCR	1 cut(s)	172
AcsI	RAATTY	2 cut(s)	680, 806
AcuI	CTGAAG	1 cut(s)	166
AfaI	GTAC	5 cut(s)	125, 575, 620, 657, 728
AfiI	CCNNNNNNNGG	1 cut(s)	425
AflIII	ACRYGT	1 cut(s)	615
AgsI	TTSAA	8 cut(s)	239, 338, 551, 585, 600, 685, 740, 794
AluBI	AGCT	4 cut(s)	28, 54, 180, 431
AluI	AGCT	4 cut(s)	28, 54, 180, 431
AlwI	GGATC	2 cut(s)	367, 713
AoxI	GGCC	1 cut(s)	172
ApeKI	GCWGC	3 cut(s)	230, 278, 536
ApoI	RAATTY	2 cut(s)	680, 806
ArsI	GACNNNNNNTTYG	2 cut(s)	773, 805
AspS9I	GGNCC	2 cut(s)	413, 490
AsuHPI	GGTGA	3 cut(s)	11, 47, 470
AvaII	GGWCC	2 cut(s)	413, 490
BbvI	GCAGC	3 cut(s)	242, 290, 523
BccI	CCATC	3 cut(s)	135, 290, 301
BfaI	CTAG	3 cut(s)	386, 440, 471
BisI	GCNGC	3 cut(s)	231, 279, 537
BlsI	GCNGC	3 cut(s)	232, 280, 538
Bme18I	GGWCC	2 cut(s)	413, 490
BmgT120I	GGNCC	2 cut(s)	413, 490
BmsI	GCATC	2 cut(s)	475, 615
Bpu10I	CCTNAGC	1 cut(s)	507
BsaJI	CCNNGG	2 cut(s)	355, 801
BsaWI	WCCGGW	1 cut(s)	621
Bsc4I	CCNNNNNNNGG	1 cut(s)	425
Bse1I	ACTGG	1 cut(s)	169
Bse3DI	GCAATG	1 cut(s)	497
BseDI	CCNNGG	2 cut(s)	355, 801
BseGI	GGATG	2 cut(s)	490, 630
BseLI	CCNNNNNNNGG	1 cut(s)	425
BseMI	GCAATG	1 cut(s)	497
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	1 cut(s)	169
BseRI	GAGGAG	1 cut(s)	492
BseXI	GCAGC	3 cut(s)	242, 290, 523
BseYI	CCCAGC	1 cut(s)	431
Bsh1236I	CGCG	1 cut(s)	107
BshFI	GGCC	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	622
BslI	CCNNNNNNNGG	1 cut(s)	425
BsnI	GGCC	1 cut(s)	174
Bsp143I	GATC	3 cut(s)	3, 359, 718
BspACI	CCGC	2 cut(s)	105, 488
BspANI	GGCC	1 cut(s)	174
BspCNI	CTCAG	1 cut(s)	499
BspFNI	CGCG	1 cut(s)	107
BspPI	GGATC	2 cut(s)	367, 713
BsrDI	GCAATG	1 cut(s)	497
BsrI	ACTGG	1 cut(s)	169
BssECI	CCNNGG	2 cut(s)	355, 801
BssMI	GATC	3 cut(s)	3, 359, 718
BssT1I	CCWWGG	2 cut(s)	355, 801
Bst4CI	ACNGT	4 cut(s)	23, 453, 494, 726
BstDEI	CTNAG	2 cut(s)	507, 629
BstF5I	GGATG	2 cut(s)	490, 630
BstFNI	CGCG	1 cut(s)	107
BstKTI	GATC	3 cut(s)	6, 362, 721
BstMBI	GATC	3 cut(s)	3, 359, 718
BstMWI	GCNNNNNNNGC	5 cut(s)	338, 508, 542, 551, 773
BstNSI	RCATGY	1 cut(s)	619
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	3 cut(s)	242, 290, 523
BstX2I	RGATCY	2 cut(s)	359, 718
BstXI	CCANNNNNNTGG	1 cut(s)	134
BstYI	RGATCY	2 cut(s)	359, 718
BsuRI	GGCC	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	490, 630
Cfr13I	GGNCC	2 cut(s)	413, 490
CpoI	CGGWCCG	1 cut(s)	490
Csp6I	GTAC	5 cut(s)	124, 574, 619, 656, 727
CspI	CGGWCCG	1 cut(s)	490
CviAII	CATG	1 cut(s)	616
CviQI	GTAC	5 cut(s)	124, 574, 619, 656, 727
DdeI	CTNAG	2 cut(s)	507, 629
DpnI	GATC	3 cut(s)	5, 361, 720
DpnII	GATC	3 cut(s)	3, 359, 718
DraI	TTTAAA	1 cut(s)	348
EaeI	YGGCCR	1 cut(s)	172
Eco130I	CCWWGG	2 cut(s)	355, 801
Eco47I	GGWCC	2 cut(s)	413, 490
Eco57I	CTGAAG	1 cut(s)	166
EcoRI	GAATTC	1 cut(s)	680
EcoT14I	CCWWGG	2 cut(s)	355, 801
ErhI	CCWWGG	2 cut(s)	355, 801
FaeI	CATG	1 cut(s)	619
FatI	CATG	1 cut(s)	615
FauNDI	CATATG	2 cut(s)	640, 772
FblI	GTMKAC	1 cut(s)	634
Fnu4HI	GCNGC	3 cut(s)	231, 279, 537
FokI	GGATG	2 cut(s)	497, 637
Fsp4HI	GCNGC	3 cut(s)	231, 279, 537
FspBI	CTAG	3 cut(s)	386, 440, 471
GluI	GCNGC	3 cut(s)	231, 279, 537
GsaI	CCCAGC	1 cut(s)	435
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	1 cut(s)	622
Hin1II	CATG	1 cut(s)	619
HincII	GTYRAC	2 cut(s)	194, 635
HindII	GTYRAC	2 cut(s)	194, 635
HinfI	GANTC	6 cut(s)	8, 38, 168, 393, 596, 758
HpaII	CCGG	1 cut(s)	622
HphI	GGTGA	3 cut(s)	11, 47, 470
Hpy166II	GTNNAC	4 cut(s)	194, 461, 635, 656
Hpy188I	TCNGA	3 cut(s)	93, 364, 679
Hpy188III	TCNNGA	3 cut(s)	419, 506, 716
Hpy8I	GTNNAC	4 cut(s)	194, 461, 635, 656
HpyCH4III	ACNGT	4 cut(s)	23, 453, 494, 726
HpyCH4V	TGCA	3 cut(s)	160, 383, 812
HpyF10VI	GCNNNNNNNGC	5 cut(s)	338, 508, 542, 551, 773
HpyF3I	CTNAG	2 cut(s)	507, 629
Hsp92II	CATG	1 cut(s)	619
Kzo9I	GATC	3 cut(s)	3, 359, 718
LmnI	GCTCC	2 cut(s)	227, 428
Lsp1109I	GCAGC	3 cut(s)	242, 290, 523
LweI	GCATC	2 cut(s)	475, 615
MaeI	CTAG	3 cut(s)	386, 440, 471
MaeIII	GTNAC	2 cut(s)	35, 704
MalI	GATC	3 cut(s)	5, 361, 720
MboI	GATC	3 cut(s)	3, 359, 718
MboII	GAAGA	3 cut(s)	3, 6, 806
MfeI	CAATTG	1 cut(s)	333
MflI	RGATCY	2 cut(s)	359, 718
MluCI	AATT	6 cut(s)	131, 222, 243, 333, 680, 806
MlyI	GAGTC	3 cut(s)	32, 162, 402
MnlI	CCTC	6 cut(s)	311, 426, 470, 475, 557, 660
MseI	TTAA	1 cut(s)	347
MslI	CAYNNNNRTG	1 cut(s)	699
MspI	CCGG	1 cut(s)	622
MunI	CAATTG	1 cut(s)	333
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	5 cut(s)	338, 508, 542, 551, 773
NdeI	CATATG	2 cut(s)	640, 772
NdeII	GATC	3 cut(s)	3, 359, 718
NlaIII	CATG	1 cut(s)	619
NmeAIII	GCCGAG	1 cut(s)	150
NmuCI	GTSAC	2 cut(s)	35, 704
NspI	RCATGY	1 cut(s)	619
PciI	ACATGT	1 cut(s)	615
PfeI	GAWTC	3 cut(s)	8, 596, 758
PkrI	GCNGC	3 cut(s)	232, 280, 538
PleI	GAGTC	3 cut(s)	32, 162, 401
PpsI	GAGTC	3 cut(s)	32, 162, 401
PscI	ACATGT	1 cut(s)	615
PspFI	CCCAGC	1 cut(s)	431
PspPI	GGNCC	2 cut(s)	413, 490
PsuI	RGATCY	2 cut(s)	359, 718
RsaI	GTAC	5 cut(s)	125, 575, 620, 657, 728
RsaNI	GTAC	5 cut(s)	124, 574, 619, 656, 727
RseI	CAYNNNNRTG	1 cut(s)	699
Rsr2I	CGGWCCG	1 cut(s)	490
RsrII	CGGWCCG	1 cut(s)	490
SalI	GTCGAC	1 cut(s)	633
SaqAI	TTAA	1 cut(s)	347
SatI	GCNGC	3 cut(s)	231, 279, 537
Sau3AI	GATC	3 cut(s)	3, 359, 718
Sau96I	GGNCC	2 cut(s)	413, 490
SchI	GAGTC	3 cut(s)	32, 162, 402
SetI	ASST	9 cut(s)	30, 37, 56, 182, 322, 357, 391, 433, 520
SfaNI	GCATC	2 cut(s)	475, 615
SinI	GGWCC	2 cut(s)	413, 490
SmiMI	CAYNNNNRTG	1 cut(s)	699
Sse9I	AATT	6 cut(s)	131, 222, 243, 333, 680, 806
SsiI	CCGC	2 cut(s)	105, 488
SspMI	CTAG	3 cut(s)	386, 440, 471
StyI	CCWWGG	2 cut(s)	355, 801
TaaI	ACNGT	4 cut(s)	23, 453, 494, 726
TaqI	TCGA	2 cut(s)	6, 634
TasI	AATT	6 cut(s)	131, 222, 243, 333, 680, 806
TatI	WGTACW	2 cut(s)	573, 655
TfiI	GAWTC	3 cut(s)	8, 596, 758
Tru1I	TTAA	1 cut(s)	347
Tru9I	TTAA	1 cut(s)	347
TseFI	GTSAC	2 cut(s)	35, 704
TseI	GCWGC	3 cut(s)	230, 278, 536
Tsp45I	GTSAC	2 cut(s)	35, 704
TspDTI	ATGAA	1 cut(s)	486
VpaK11BI	GGWCC	2 cut(s)	413, 490
XapI	RAATTY	2 cut(s)	680, 806
XceI	RCATGY	1 cut(s)	619
XcmI	CCANNNNNNNNNTGG	1 cut(s)	258
XmiI	GTMKAC	1 cut(s)	634
XspI	CTAG	3 cut(s)	386, 440, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.