Rroxscaffold_1G00036210

Protein transport protein Sec24-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0009667
Physical Location & Seq
Reverse (-)
52838549 .. 52840951
2403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00036210.1

Sequence Viewer

Length: 729 bp
ATGTTCGAGAAGTACGGCACAGTCGTCGACGTTGAGGTGGAAACTTGTAAGGACTGTATTGGATCAGCACTTGAAACAATTAGACCAACAACTTCATGGGAGAGAACAACAGCAGCAGGGCAAGGAGTAGATGGTGTTTTGATGGGTGGGCGAGGTTTTGGGGTGGCAATTGAAGCCCTTTTGAACGACCTTGGATCTGAATATGGAAGCACATTTGCACTAGGTAGAGTCTTTGCCTTTTTGTCTGGTCCTCCTGACTATGGAGCTGGGCAACTAGATACAAGACGGTACGGTGAACAATATGCTAGTAGAGGAGAGGATGCGGACCGTGCATTGCTTCCTGAGCAGACACCTTTCTATAAAGATTTGGCTGCTGTCGCTGTTCAAGCAGGTGTTTGCGTAGACATCTTTGCTGTTACAAATGAGTATACAGATTTGGCGTCTCTGAAGTTTCTTAGCGTAGAAAGTGGAGGCTCATTGTACTTTTATTCAAATGCTGATGATTCAACACTTCCACAGGACATAGGGTGCCCTCATTGGAGCTGGGCCAATTCTAACTGGTTCTCACCCTTCTCGACAAAAGATGTAAAGGTTCTAAGCATACAGAACTATGGTCACTTCTTTCCAGATCCACAGTATGAGAATGTTCAACACATTATCTGTTGTGATTCTTACGCCACATATGCTTATGACTTTGAGTTTGAAGCTACCAAGGAATTTTCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

242

Amino Acids

26.64

Weight (kDa)

4.35

Isoelectric Point (pI)

29.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec23_trunk PF04811 50 - 165 2.7e-19 Sec23/Sec24 trunk domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 380
Acc36I ACCTGC 1 cut(s) 380
AccB1I GGYRCC 1 cut(s) 528
AccI GTMKAC 3 cut(s) 27, 402, 428
AciI CCGC 1 cut(s) 323
AclWI GGATC 3 cut(s) 70, 202, 623
AcsI RAATTY 1 cut(s) 716
AcuI CTGAAG 1 cut(s) 467
AcyI GRCGYC 1 cut(s) 440
AfaI GTAC 3 cut(s) 14, 290, 482
AfiI CCNNNNNNNGG 1 cut(s) 260
AgsI TTSAA 9 cut(s) 74, 173, 184, 386, 492, 507, 650, 704, 723
AluBI AGCT 3 cut(s) 266, 543, 707
AluI AGCT 3 cut(s) 266, 543, 707
Alw26I GTCTC 1 cut(s) 447
AlwI GGATC 3 cut(s) 70, 202, 623
AoxI GGCC 1 cut(s) 546
ApeKI GCWGC 2 cut(s) 113, 371
ApoI RAATTY 1 cut(s) 716
ArsI GACNNNNNNTTYG 2 cut(s) 683, 715
AspS9I GGNCC 3 cut(s) 248, 325, 546
AsuHPI GGTGA 2 cut(s) 305, 558
AvaII GGWCC 2 cut(s) 248, 325
BaeGI GKGCMC 1 cut(s) 533
BanI GGYRCC 1 cut(s) 528
BbvI GCAGC 2 cut(s) 125, 358
BccI CCATC 2 cut(s) 125, 136
BceAI ACGGC 1 cut(s) 31
BcgI CGANNNNNNTGC 2 cut(s) 7, 41
BcoDI GTCTC 1 cut(s) 447
BfaI CTAG 3 cut(s) 221, 275, 306
BfuAI ACCTGC 1 cut(s) 380
BisI GCNGC 2 cut(s) 114, 372
BlsI GCNGC 2 cut(s) 115, 373
Bme18I GGWCC 2 cut(s) 248, 325
BmgT120I GGNCC 3 cut(s) 248, 325, 546
BmiI GGNNCC 1 cut(s) 530
BmsI GCATC 1 cut(s) 310
Bpu10I CCTNAGC 1 cut(s) 342
BsaHI GRCGYC 1 cut(s) 440
BsaJI CCNNGG 2 cut(s) 190, 711
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse1I ACTGG 1 cut(s) 563
Bse3DI GCAATG 1 cut(s) 332
BseDI CCNNGG 2 cut(s) 190, 711
BseGI GGATG 1 cut(s) 325
BseLI CCNNNNNNNGG 1 cut(s) 260
BseMI GCAATG 1 cut(s) 332
BseMII CTCAG 1 cut(s) 333
BseNI ACTGG 1 cut(s) 563
BseRI GAGGAG 1 cut(s) 327
BseSI GKGCMC 1 cut(s) 533
BseXI GCAGC 2 cut(s) 125, 358
BseYI CCCAGC 2 cut(s) 266, 543
BshFI GGCC 1 cut(s) 548
BshNI GGYRCC 1 cut(s) 528
BslI CCNNNNNNNGG 1 cut(s) 260
BsmAI GTCTC 1 cut(s) 447
BsmBI CGTCTC 1 cut(s) 447
BsnI GGCC 1 cut(s) 548
Bsp1286I GDGCHC 1 cut(s) 533
Bsp143I GATC 3 cut(s) 62, 194, 628
BspACI CCGC 1 cut(s) 323
BspANI GGCC 1 cut(s) 548
BspCNI CTCAG 1 cut(s) 334
BspLI GGNNCC 1 cut(s) 530
BspMI ACCTGC 1 cut(s) 380
BspPI GGATC 3 cut(s) 70, 202, 623
BspT107I GGYRCC 1 cut(s) 528
BsrDI GCAATG 1 cut(s) 332
BsrI ACTGG 1 cut(s) 563
BssECI CCNNGG 2 cut(s) 190, 711
BssMI GATC 3 cut(s) 62, 194, 628
BssNAI GTATAC 1 cut(s) 429
BssNI GRCGYC 1 cut(s) 440
BssT1I CCWWGG 2 cut(s) 190, 711
Bst1107I GTATAC 1 cut(s) 429
Bst4CI ACNGT 6 cut(s) 22, 56, 288, 293, 329, 636
BstACI GRCGYC 1 cut(s) 440
BstDEI CTNAG 3 cut(s) 342, 455, 596
BstF5I GGATG 1 cut(s) 325
BstKTI GATC 3 cut(s) 65, 197, 631
BstMAI GTCTC 1 cut(s) 447
BstMBI GATC 3 cut(s) 62, 194, 628
BstMWI GCNNNNNNNGC 6 cut(s) 173, 329, 343, 377, 386, 683
BstSLI GKGCMC 1 cut(s) 533
BstV1I GCAGC 2 cut(s) 125, 358
BstX2I RGATCY 2 cut(s) 194, 628
BstYI RGATCY 2 cut(s) 194, 628
BstZ17I GTATAC 1 cut(s) 429
BsuRI GGCC 1 cut(s) 548
BtsCI GGATG 1 cut(s) 325
BveI ACCTGC 1 cut(s) 380
Cfr13I GGNCC 3 cut(s) 248, 325, 546
CpoI CGGWCCG 1 cut(s) 325
CseI GACGC 1 cut(s) 429
Csp6I GTAC 3 cut(s) 13, 289, 481
CspI CGGWCCG 1 cut(s) 325
CviAII CATG 1 cut(s) 96
CviJI RGCY 7 cut(s) 176, 266, 371, 474, 543, 548, 707
CviKI_1 RGCY 7 cut(s) 176, 266, 371, 474, 543, 548, 707
CviQI GTAC 3 cut(s) 13, 289, 481
DdeI CTNAG 3 cut(s) 342, 455, 596
DpnI GATC 3 cut(s) 64, 196, 630
DpnII GATC 3 cut(s) 62, 194, 628
Eco130I CCWWGG 2 cut(s) 190, 711
Eco47I GGWCC 2 cut(s) 248, 325
Eco57I CTGAAG 1 cut(s) 467
EcoT14I CCWWGG 2 cut(s) 190, 711
ErhI CCWWGG 2 cut(s) 190, 711
Esp3I CGTCTC 1 cut(s) 447
FaeI CATG 1 cut(s) 99
FatI CATG 1 cut(s) 95
FauNDI CATATG 1 cut(s) 682
FblI GTMKAC 3 cut(s) 27, 402, 428
Fnu4HI GCNGC 2 cut(s) 114, 372
FokI GGATG 1 cut(s) 332
Fsp4HI GCNGC 2 cut(s) 114, 372
FspBI CTAG 3 cut(s) 221, 275, 306
GluI GCNGC 2 cut(s) 114, 372
GsaI CCCAGC 2 cut(s) 270, 547
HaeIII GGCC 1 cut(s) 548
HgaI GACGC 1 cut(s) 429
Hin1I GRCGYC 1 cut(s) 440
Hin1II CATG 1 cut(s) 99
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HinfI GANTC 3 cut(s) 228, 503, 668
HphI GGTGA 2 cut(s) 305, 558
Hpy166II GTNNAC 4 cut(s) 28, 296, 403, 429
Hpy188I TCNGA 2 cut(s) 199, 447
Hpy188III TCNNGA 5 cut(s) 7, 254, 341, 574, 626
Hpy8I GTNNAC 4 cut(s) 28, 296, 403, 429
Hpy99I CGWCG 2 cut(s) 29, 32
HpyAV CCTTC 1 cut(s) 580
HpyCH4III ACNGT 6 cut(s) 22, 56, 288, 293, 329, 636
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 2 cut(s) 218, 332
HpyF10VI GCNNNNNNNGC 6 cut(s) 173, 329, 343, 377, 386, 683
HpyF3I CTNAG 3 cut(s) 342, 455, 596
HpySE526I ACGT 1 cut(s) 30
Hsp92I GRCGYC 1 cut(s) 440
Hsp92II CATG 1 cut(s) 99
Kzo9I GATC 3 cut(s) 62, 194, 628
LmnI GCTCC 2 cut(s) 263, 540
Lsp1109I GCAGC 2 cut(s) 125, 358
LweI GCATC 1 cut(s) 310
MaeI CTAG 3 cut(s) 221, 275, 306
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 2 cut(s) 415, 614
MalI GATC 3 cut(s) 64, 196, 630
MboI GATC 3 cut(s) 62, 194, 628
MfeI CAATTG 1 cut(s) 168
MflI RGATCY 2 cut(s) 194, 628
MhlI GDGCHC 1 cut(s) 533
MluCI AATT 4 cut(s) 78, 168, 550, 716
MlyI GAGTC 1 cut(s) 237
MnlI CCTC 7 cut(s) 28, 146, 261, 305, 310, 464, 543
MunI CAATTG 1 cut(s) 168
MwoI GCNNNNNNNGC 6 cut(s) 173, 329, 343, 377, 386, 683
NdeI CATATG 1 cut(s) 682
NdeII GATC 3 cut(s) 62, 194, 628
NlaIII CATG 1 cut(s) 99
NlaIV GGNNCC 1 cut(s) 530
NmuCI GTSAC 1 cut(s) 614
PaqCI CACCTGC 1 cut(s) 380
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PfeI GAWTC 2 cut(s) 503, 668
PkrI GCNGC 2 cut(s) 115, 373
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
PspFI CCCAGC 2 cut(s) 266, 543
PspN4I GGNNCC 1 cut(s) 530
PspPI GGNCC 3 cut(s) 248, 325, 546
PsuI RGATCY 2 cut(s) 194, 628
RsaI GTAC 3 cut(s) 14, 290, 482
RsaNI GTAC 3 cut(s) 13, 289, 481
Rsr2I CGGWCCG 1 cut(s) 325
RsrII CGGWCCG 1 cut(s) 325
SalI GTCGAC 1 cut(s) 26
SatI GCNGC 2 cut(s) 114, 372
Sau3AI GATC 3 cut(s) 62, 194, 628
Sau96I GGNCC 3 cut(s) 248, 325, 546
SchI GAGTC 1 cut(s) 237
SduI GDGCHC 1 cut(s) 533
SfaNI GCATC 1 cut(s) 310
SgrDI CGTCGACG 1 cut(s) 26
SinI GGWCC 2 cut(s) 248, 325
Sse9I AATT 4 cut(s) 78, 168, 550, 716
SsiI CCGC 1 cut(s) 323
SspMI CTAG 3 cut(s) 221, 275, 306
StyI CCWWGG 2 cut(s) 190, 711
TaaI ACNGT 6 cut(s) 22, 56, 288, 293, 329, 636
TaiI ACGT 1 cut(s) 33
TaqI TCGA 3 cut(s) 6, 27, 575
TasI AATT 4 cut(s) 78, 168, 550, 716
TatI WGTACW 1 cut(s) 480
TfiI GAWTC 2 cut(s) 503, 668
TseFI GTSAC 1 cut(s) 614
TseI GCWGC 2 cut(s) 113, 371
Tsp45I GTSAC 1 cut(s) 614
TspDTI ATGAA 1 cut(s) 84
VpaK11BI GGWCC 2 cut(s) 248, 325
XapI RAATTY 1 cut(s) 716
XcmI CCANNNNNNNNNTGG 1 cut(s) 93
XmiI GTMKAC 3 cut(s) 27, 402, 428
XspI CTAG 3 cut(s) 221, 275, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.