Rh5DG315300

Protein transport protein Sec24-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0009667
Physical Location & Seq
Reverse (-)
40449447 .. 40454318
4872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG315300.1

Sequence Viewer

Length: 675 bp
ATGCTAAGTCGACCATATGCTTTTGGCTGTGTACTGCGATTGAGGACATCATCTGAATTCAAAACTGGTCATTCTTATGGTCACTTCTTTCCAGATCCACAGTATGAGAATGTTCAACACATTATCTGTTGTGATTCTTACGCCACATATGCTTATGACTTTGAGTTTGAAGCTACCAAGGAATTTTCAAAACATGGTTCAGAACCTCCTATTATACAGATTGCGTTTCAATACACAGTCGTTCTGCCTCCTGAGGAGCTCACGGATTCAGGATTGGTTTCCTCAGTTAGAGGCAAGCATTCTCTTAAACGACGATTAAGGATTTGGACTTTGCAATGTGGAGTCGCCCAAAACATGAATGAACTCTATGACAGTGTTGATCCTGAAGTGGTTCTCTCATTACTTGTTCACAAGGTTATATTAGCCTCCTTGGAGCAAGGGGTTCGGGAAGGAGGACTGTTATTGCACGATTGGCTTGTGATTCTGACAGTTCAATACAATGAAGCTCATAAACTTGTTCACTACAAGAACGGAAAAGGTGTTCACCCTAATTACCGAATCTACCTACAGTGTCTTTTCAGTGCACTTGAACCAAGTTCACTTCATCGTGCCGTCTATCCAGTCCTCACCTCATATTCTACTCCCGATAAACTAGCATACCCACAAGCTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

224

Amino Acids

25.57

Weight (kDa)

6.82

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec23_BS PF08033 7 - 79 2.3e-06 Sec23/Sec24 beta-sandwich domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 10
AclWI GGATC 2 cut(s) 89, 374
AcsI RAATTY 2 cut(s) 56, 182
AcuI CTGAAG 1 cut(s) 405
AfaI GTAC 1 cut(s) 33
AgsI TTSAA 7 cut(s) 61, 116, 170, 189, 230, 494, 590
AloI GAACNNNNNNTCC 2 cut(s) 525, 557
AluBI AGCT 4 cut(s) 173, 259, 506, 668
AluI AGCT 4 cut(s) 173, 259, 506, 668
Alw21I GWGCWC 2 cut(s) 261, 586
Alw44I GTGCAC 1 cut(s) 582
AlwI GGATC 2 cut(s) 89, 374
ApaLI GTGCAC 1 cut(s) 582
ApoI RAATTY 2 cut(s) 56, 182
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
Asp700I GAANNNNTTC 1 cut(s) 390
AsuHPI GGTGA 2 cut(s) 536, 619
AxyI CCTNAGG 1 cut(s) 252
BaeGI GKGCMC 1 cut(s) 586
BanII GRGCYC 1 cut(s) 261
Bbv12I GWGCWC 2 cut(s) 261, 586
BceAI ACGGC 1 cut(s) 596
BcgI CGANNNNNNTGC 2 cut(s) 425, 459
BfaI CTAG 2 cut(s) 653, 669
BfmI CTRYAG 1 cut(s) 566
BsaJI CCNNGG 2 cut(s) 177, 429
Bse1I ACTGG 2 cut(s) 70, 620
Bse21I CCTNAGG 1 cut(s) 252
Bse3DI GCAATG 1 cut(s) 341
BseDI CCNNGG 2 cut(s) 177, 429
BseMI GCAATG 1 cut(s) 341
BseMII CTCAG 2 cut(s) 243, 297
BseNI ACTGG 2 cut(s) 70, 620
BseRI GAGGAG 1 cut(s) 269
BseSI GKGCMC 1 cut(s) 586
BsiHKAI GWGCWC 2 cut(s) 261, 586
BsmI GAATGC 1 cut(s) 298
Bsp1286I GDGCHC 2 cut(s) 261, 586
Bsp143I GATC 2 cut(s) 94, 379
BspCNI CTCAG 2 cut(s) 244, 296
BspPI GGATC 2 cut(s) 89, 374
BsrDI GCAATG 1 cut(s) 341
BsrI ACTGG 2 cut(s) 70, 620
BssECI CCNNGG 2 cut(s) 177, 429
BssMI GATC 2 cut(s) 94, 379
BssT1I CCWWGG 2 cut(s) 177, 429
Bst4CI ACNGT 6 cut(s) 102, 238, 374, 459, 490, 570
BstC8I GCNNGC 1 cut(s) 296
BstDEI CTNAG 3 cut(s) 5, 252, 283
BstKTI GATC 2 cut(s) 97, 382
BstMBI GATC 2 cut(s) 94, 379
BstMWI GCNNNNNNNGC 2 cut(s) 149, 472
BstSFI CTRYAG 1 cut(s) 566
BstSLI GKGCMC 1 cut(s) 586
BstX2I RGATCY 1 cut(s) 94
BstYI RGATCY 1 cut(s) 94
Bsu36I CCTNAGG 1 cut(s) 252
BtsIMutI CAGTG 3 cut(s) 379, 575, 586
Cac8I GCNNGC 1 cut(s) 296
Csp6I GTAC 1 cut(s) 32
CviAII CATG 2 cut(s) 194, 355
CviJI RGCY 7 cut(s) 27, 173, 259, 425, 475, 506, 668
CviKI_1 RGCY 7 cut(s) 27, 173, 259, 425, 475, 506, 668
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 3 cut(s) 5, 252, 283
DpnI GATC 2 cut(s) 96, 381
DpnII GATC 2 cut(s) 94, 379
Ecl136II GAGCTC 1 cut(s) 259
Eco130I CCWWGG 2 cut(s) 177, 429
Eco24I GRGCYC 1 cut(s) 261
Eco53kI GAGCTC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 405
Eco81I CCTNAGG 1 cut(s) 252
EcoICRI GAGCTC 1 cut(s) 259
EcoRI GAATTC 1 cut(s) 56
EcoT14I CCWWGG 2 cut(s) 177, 429
EcoT38I GRGCYC 1 cut(s) 261
ErhI CCWWGG 2 cut(s) 177, 429
FaeI CATG 2 cut(s) 197, 358
FatI CATG 2 cut(s) 193, 354
FauNDI CATATG 2 cut(s) 16, 148
FblI GTMKAC 1 cut(s) 10
FriOI GRGCYC 1 cut(s) 261
FspBI CTAG 2 cut(s) 653, 669
Hin1II CATG 2 cut(s) 197, 358
HincII GTYRAC 1 cut(s) 11
HindII GTYRAC 1 cut(s) 11
HinfI GANTC 5 cut(s) 134, 266, 342, 481, 558
HphI GGTGA 2 cut(s) 536, 619
Hpy166II GTNNAC 7 cut(s) 11, 32, 409, 520, 544, 584, 599
Hpy188I TCNGA 3 cut(s) 55, 202, 486
Hpy188III TCNNGA 6 cut(s) 92, 251, 270, 383, 446, 644
Hpy8I GTNNAC 7 cut(s) 11, 32, 409, 520, 544, 584, 599
Hpy99I CGWCG 1 cut(s) 315
HpyAV CCTTC 1 cut(s) 443
HpyCH4III ACNGT 6 cut(s) 102, 238, 374, 459, 490, 570
HpyCH4V TGCA 3 cut(s) 334, 466, 584
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 472
HpyF3I CTNAG 3 cut(s) 5, 252, 283
Hsp92II CATG 2 cut(s) 197, 358
Kzo9I GATC 2 cut(s) 94, 379
LmnI GCTCC 2 cut(s) 256, 433
LpnPI CCDG 6 cut(s) 51, 105, 255, 264, 396, 633
MaeI CTAG 2 cut(s) 653, 669
MaeIII GTNAC 1 cut(s) 80
MalI GATC 2 cut(s) 96, 381
MboI GATC 2 cut(s) 94, 379
MflI RGATCY 1 cut(s) 94
MhlI GDGCHC 2 cut(s) 261, 586
MluCI AATT 3 cut(s) 56, 182, 550
MlyI GAGTC 1 cut(s) 351
MroXI GAANNNNTTC 1 cut(s) 390
MseI TTAA 2 cut(s) 306, 317
MslI CAYNNNNRTG 1 cut(s) 75
Mva1269I GAATGC 1 cut(s) 298
MwoI GCNNNNNNNGC 2 cut(s) 149, 472
NdeI CATATG 2 cut(s) 16, 148
NdeII GATC 2 cut(s) 94, 379
NlaIII CATG 2 cut(s) 197, 358
NmuCI GTSAC 1 cut(s) 80
PctI GAATGC 1 cut(s) 298
PdmI GAANNNNTTC 1 cut(s) 390
PfeI GAWTC 4 cut(s) 134, 266, 481, 558
PleI GAGTC 1 cut(s) 350
PpsI GAGTC 1 cut(s) 350
Psp124BI GAGCTC 1 cut(s) 261
PsuI RGATCY 1 cut(s) 94
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
RseI CAYNNNNRTG 1 cut(s) 75
SacI GAGCTC 1 cut(s) 261
SalI GTCGAC 1 cut(s) 9
SaqAI TTAA 2 cut(s) 306, 317
Sau3AI GATC 2 cut(s) 94, 379
SchI GAGTC 1 cut(s) 351
SduI GDGCHC 2 cut(s) 261, 586
SetI ASST 9 cut(s) 175, 208, 261, 417, 508, 541, 567, 632, 670
SfcI CTRYAG 1 cut(s) 566
SmiMI CAYNNNNRTG 1 cut(s) 75
Sse9I AATT 3 cut(s) 56, 182, 550
SspMI CTAG 2 cut(s) 653, 669
SstI GAGCTC 1 cut(s) 261
StyI CCWWGG 2 cut(s) 177, 429
TaaI ACNGT 6 cut(s) 102, 238, 374, 459, 490, 570
TaqI TCGA 1 cut(s) 10
TasI AATT 3 cut(s) 56, 182, 550
TatI WGTACW 1 cut(s) 31
TfiI GAWTC 4 cut(s) 134, 266, 481, 558
Tru1I TTAA 2 cut(s) 306, 317
Tru9I TTAA 2 cut(s) 306, 317
TscAI CASTG 3 cut(s) 379, 575, 586
TseFI GTSAC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 4 cut(s) 371, 375, 516, 593
TspGWI ACGGA 2 cut(s) 278, 546
TspRI CASTG 3 cut(s) 379, 575, 586
VneI GTGCAC 1 cut(s) 582
XapI RAATTY 2 cut(s) 56, 182
XmiI GTMKAC 1 cut(s) 10
XmnI GAANNNNTTC 1 cut(s) 390
XspI CTAG 2 cut(s) 653, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.