RchiOBHm_Chr5g0016631

Protein transport protein Sec24-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0009667
Physical Location & Seq
Reverse (-)
11455398 .. 11456595
1198 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29700

Sequence Viewer

Length: 558 bp
ATGAAGTTAAATATTTCTTCTGACAGAGGAAGTACACAGCCCTTGTTACAGTTCTTGGCTCCAGTGGAAACTTGTAAGGACCGTATTGGATCAGCACTTGAAACAATTAGACCAACAACTTCATGGGAGAGAACAACAGTAGTAGGGCAAGGAGTAGATGGTGTTCTGATGGGTGGGCGAGGTTTTGGCGTGGCAATTGAAGCCCTTTTAAACTACCTTGGATCTGAATATGGAAGCACATTTGCACTAGGTAGAGTCTTTACCTTTTTGTCTGGTCCTCCTGACTATGGAGCTGGGCAACTAGATACAAGACGGTACGATAAACAATATGCTAGTAGAGGAGAGGATGCGGACCGTGCATTGCTTCCTGAGCAGACACCTTTCTATAAAGATTTGGCTGCTGTCGCTATTCAAGCAGGTGTTTGCGTAGACATCTTTGCTGTTACAAATGAGTATACAAATTTGGCGTCTCTGAAGTTTCTTAGAGTAGAAAGTGGAGGCTCATTGTACTTTATTCAAATACTGATGATTCAACACTTCCACAGGACATGTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

185

Amino Acids

20.29

Weight (kDa)

5.44

Isoelectric Point (pI)

29.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec23_trunk PF04811 17 - 173 3.4e-19 Sec23/Sec24 trunk domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 407
Acc36I ACCTGC 1 cut(s) 407
AccI GTMKAC 2 cut(s) 429, 455
AciI CCGC 1 cut(s) 350
AclWI GGATC 2 cut(s) 97, 229
AcsI RAATTY 1 cut(s) 460
AcuI CTGAAG 1 cut(s) 494
AcyI GRCGYC 1 cut(s) 467
AfaI GTAC 3 cut(s) 34, 317, 509
AfiI CCNNNNNNNGG 1 cut(s) 287
AflIII ACRYGT 1 cut(s) 548
AgsI TTSAA 5 cut(s) 101, 200, 413, 518, 533
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
Alw26I GTCTC 1 cut(s) 474
AlwI GGATC 2 cut(s) 97, 229
ApeKI GCWGC 1 cut(s) 398
ApoI RAATTY 1 cut(s) 460
ArsI GACNNNNNNTTYG 2 cut(s) 452, 484
AspS9I GGNCC 3 cut(s) 79, 275, 352
AvaII GGWCC 3 cut(s) 79, 275, 352
BbvI GCAGC 1 cut(s) 385
BccI CCATC 2 cut(s) 152, 163
BcoDI GTCTC 1 cut(s) 474
BfaI CTAG 3 cut(s) 248, 302, 333
BfuAI ACCTGC 1 cut(s) 407
BisI GCNGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 400
Bme18I GGWCC 3 cut(s) 79, 275, 352
BmgT120I GGNCC 3 cut(s) 79, 275, 352
BmiI GGNNCC 1 cut(s) 60
BmsI GCATC 1 cut(s) 337
BpmI CTGGAG 1 cut(s) 45
Bpu10I CCTNAGC 1 cut(s) 369
BsaHI GRCGYC 1 cut(s) 467
BsaJI CCNNGG 1 cut(s) 217
Bsc4I CCNNNNNNNGG 1 cut(s) 287
Bse1I ACTGG 1 cut(s) 62
Bse3DI GCAATG 1 cut(s) 359
BseDI CCNNGG 1 cut(s) 217
BseGI GGATG 1 cut(s) 352
BseLI CCNNNNNNNGG 1 cut(s) 287
BseMI GCAATG 1 cut(s) 359
BseMII CTCAG 1 cut(s) 360
BseNI ACTGG 1 cut(s) 62
BseRI GAGGAG 1 cut(s) 354
BseXI GCAGC 1 cut(s) 385
BseYI CCCAGC 1 cut(s) 293
BslI CCNNNNNNNGG 1 cut(s) 287
BsmAI GTCTC 1 cut(s) 474
BsmBI CGTCTC 1 cut(s) 474
Bsp143I GATC 2 cut(s) 89, 221
BspACI CCGC 1 cut(s) 350
BspCNI CTCAG 1 cut(s) 361
BspLI GGNNCC 1 cut(s) 60
BspMI ACCTGC 1 cut(s) 407
BspPI GGATC 2 cut(s) 97, 229
BsrDI GCAATG 1 cut(s) 359
BsrI ACTGG 1 cut(s) 62
BssECI CCNNGG 1 cut(s) 217
BssMI GATC 2 cut(s) 89, 221
BssNAI GTATAC 1 cut(s) 456
BssNI GRCGYC 1 cut(s) 467
BssT1I CCWWGG 1 cut(s) 217
Bst1107I GTATAC 1 cut(s) 456
Bst4CI ACNGT 5 cut(s) 51, 83, 139, 315, 356
BstACI GRCGYC 1 cut(s) 467
BstDEI CTNAG 2 cut(s) 369, 482
BstF5I GGATG 1 cut(s) 352
BstKTI GATC 2 cut(s) 92, 224
BstMAI GTCTC 1 cut(s) 474
BstMBI GATC 2 cut(s) 89, 221
BstMWI GCNNNNNNNGC 5 cut(s) 200, 356, 370, 404, 413
BstNSI RCATGY 1 cut(s) 552
BstV1I GCAGC 1 cut(s) 385
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
BstZ17I GTATAC 1 cut(s) 456
BtsCI GGATG 1 cut(s) 352
BtsIMutI CAGTG 1 cut(s) 69
BveI ACCTGC 1 cut(s) 407
Cfr13I GGNCC 3 cut(s) 79, 275, 352
CpoI CGGWCCG 1 cut(s) 352
CseI GACGC 1 cut(s) 456
Csp6I GTAC 3 cut(s) 33, 316, 508
CspI CGGWCCG 1 cut(s) 352
CviAII CATG 2 cut(s) 123, 549
CviJI RGCY 6 cut(s) 40, 59, 203, 293, 398, 501
CviKI_1 RGCY 6 cut(s) 40, 59, 203, 293, 398, 501
CviQI GTAC 3 cut(s) 33, 316, 508
DdeI CTNAG 2 cut(s) 369, 482
DpnI GATC 2 cut(s) 91, 223
DpnII GATC 2 cut(s) 89, 221
DraI TTTAAA 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 217
Eco47I GGWCC 3 cut(s) 79, 275, 352
Eco57I CTGAAG 1 cut(s) 494
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
Esp3I CGTCTC 1 cut(s) 474
FaeI CATG 2 cut(s) 126, 552
FaiI YATR 7 cut(s) 124, 231, 288, 330, 387, 456, 550
FatI CATG 2 cut(s) 122, 548
FblI GTMKAC 2 cut(s) 429, 455
Fnu4HI GCNGC 1 cut(s) 399
FokI GGATG 1 cut(s) 359
Fsp4HI GCNGC 1 cut(s) 399
FspBI CTAG 3 cut(s) 248, 302, 333
GluI GCNGC 1 cut(s) 399
GsaI CCCAGC 1 cut(s) 297
GsuI CTGGAG 1 cut(s) 45
HgaI GACGC 1 cut(s) 456
Hin1I GRCGYC 1 cut(s) 467
Hin1II CATG 2 cut(s) 126, 552
HinfI GANTC 2 cut(s) 255, 529
Hpy166II GTNNAC 3 cut(s) 35, 430, 456
Hpy188I TCNGA 4 cut(s) 22, 168, 226, 474
Hpy188III TCNNGA 2 cut(s) 281, 368
Hpy8I GTNNAC 3 cut(s) 35, 430, 456
HpyCH4III ACNGT 5 cut(s) 51, 83, 139, 315, 356
HpyCH4V TGCA 2 cut(s) 245, 359
HpyF10VI GCNNNNNNNGC 5 cut(s) 200, 356, 370, 404, 413
HpyF3I CTNAG 2 cut(s) 369, 482
Hsp92I GRCGYC 1 cut(s) 467
Hsp92II CATG 2 cut(s) 126, 552
Kzo9I GATC 2 cut(s) 89, 221
LmnI GCTCC 2 cut(s) 64, 290
LpnPI CCDG 7 cut(s) 75, 258, 279, 294, 381, 402, 529
Lsp1109I GCAGC 1 cut(s) 385
LweI GCATC 1 cut(s) 337
MaeI CTAG 3 cut(s) 248, 302, 333
MaeIII GTNAC 2 cut(s) 45, 442
MalI GATC 2 cut(s) 91, 223
MboI GATC 2 cut(s) 89, 221
MboII GAAGA 1 cut(s) 9
MfeI CAATTG 1 cut(s) 195
MflI RGATCY 1 cut(s) 221
MluCI AATT 3 cut(s) 105, 195, 460
MlyI GAGTC 1 cut(s) 264
MnlI CCTC 6 cut(s) 20, 173, 288, 332, 337, 491
MseI TTAA 2 cut(s) 8, 209
MunI CAATTG 1 cut(s) 195
MwoI GCNNNNNNNGC 5 cut(s) 200, 356, 370, 404, 413
NdeII GATC 2 cut(s) 89, 221
NlaIII CATG 2 cut(s) 126, 552
NlaIV GGNNCC 1 cut(s) 60
NspI RCATGY 1 cut(s) 552
PaqCI CACCTGC 1 cut(s) 407
PciI ACATGT 1 cut(s) 548
PfeI GAWTC 1 cut(s) 529
PkrI GCNGC 1 cut(s) 400
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
PscI ACATGT 1 cut(s) 548
PspFI CCCAGC 1 cut(s) 293
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 3 cut(s) 79, 275, 352
PsrI GAACNNNNNNTAC 2 cut(s) 147, 179
PsuI RGATCY 1 cut(s) 221
RsaI GTAC 3 cut(s) 34, 317, 509
RsaNI GTAC 3 cut(s) 33, 316, 508
Rsr2I CGGWCCG 1 cut(s) 352
RsrII CGGWCCG 1 cut(s) 352
SaqAI TTAA 2 cut(s) 8, 209
SatI GCNGC 1 cut(s) 399
Sau3AI GATC 2 cut(s) 89, 221
Sau96I GGNCC 3 cut(s) 79, 275, 352
SchI GAGTC 1 cut(s) 264
SetI ASST 7 cut(s) 184, 219, 253, 266, 295, 382, 421
SfaNI GCATC 1 cut(s) 337
SinI GGWCC 3 cut(s) 79, 275, 352
Sse9I AATT 3 cut(s) 105, 195, 460
SsiI CCGC 1 cut(s) 350
SspI AATATT 1 cut(s) 13
SspMI CTAG 3 cut(s) 248, 302, 333
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 5 cut(s) 51, 83, 139, 315, 356
TasI AATT 3 cut(s) 105, 195, 460
TatI WGTACW 2 cut(s) 32, 507
TfiI GAWTC 1 cut(s) 529
Tru1I TTAA 2 cut(s) 8, 209
Tru9I TTAA 2 cut(s) 8, 209
TscAI CASTG 1 cut(s) 69
TseI GCWGC 1 cut(s) 398
TspDTI ATGAA 2 cut(s) 17, 111
TspRI CASTG 1 cut(s) 69
VpaK11BI GGWCC 3 cut(s) 79, 275, 352
XapI RAATTY 1 cut(s) 460
XceI RCATGY 1 cut(s) 552
XcmI CCANNNNNNNNNTGG 1 cut(s) 120
XmiI GTMKAC 2 cut(s) 429, 455
XspI CTAG 3 cut(s) 248, 302, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.