Rmu_co8474103.1_g000001

Protein transport protein Sec24-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8474103.1
OG0009667
Physical Location & Seq
Reverse (-)
175 .. 1466
1292 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8474103.1_g000001.1.cds

Sequence Viewer

Length: 399 bp
atgaatgaactctatgacagtgttgatcctgaagtggttctctcattacttgttcacaaggttatattagcctccttggagcaaggggttcgggaaggaagactgttattgcacgattggcttgtgattctaacagctcaatacaatgaagcttataaaattgttcactacaagaacggaagttcagtgactgcccaaattgatgttgcattctcacaatgccccgaactgcagcctttaccccgattagtttttgcattgcttcgaaatcctctgctcctttttcatgaagaaggtgttcatcccgattaccgaatctacctacagtgtcttttcaggtatttgatggtcaaactgttattaacgaaaatcttccaggattctgttacagggttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

132

Amino Acids

15.24

Weight (kDa)

5.9

Isoelectric Point (pI)

34.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 156
AclWI GGATC 1 cut(s) 20
AcuI CTGAAG 1 cut(s) 51
AjnI CCWGG 1 cut(s) 375
AluBI AGCT 2 cut(s) 137, 152
AluI AGCT 2 cut(s) 137, 152
AlwI GGATC 1 cut(s) 20
AlwNI CAGNNNCTG 1 cut(s) 191
ApeKI GCWGC 1 cut(s) 232
Asp700I GAANNNNTTC 3 cut(s) 36, 297, 371
AsuII TTCGAA 1 cut(s) 265
BbsI GAAGAC 1 cut(s) 106
BbvI GCAGC 1 cut(s) 244
BccI CCATC 1 cut(s) 340
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BciT130I CCWGG 1 cut(s) 377
BfmI CTRYAG 2 cut(s) 230, 323
BisI GCNGC 1 cut(s) 233
BlsI GCNGC 1 cut(s) 234
Bme1390I CCNGG 1 cut(s) 377
BmrFI CCNGG 1 cut(s) 377
BpiI GAAGAC 1 cut(s) 106
Bpu14I TTCGAA 1 cut(s) 265
BsaJI CCNNGG 1 cut(s) 75
Bse3DI GCAATG 1 cut(s) 257
BseBI CCWGG 1 cut(s) 377
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 1 cut(s) 301
BseMI GCAATG 1 cut(s) 257
BseXI GCAGC 1 cut(s) 244
BsmI GAATGC 1 cut(s) 209
Bsp119I TTCGAA 1 cut(s) 265
Bsp143I GATC 1 cut(s) 25
BspHI TCATGA 1 cut(s) 286
BspMAI CTGCAG 1 cut(s) 234
BspPI GGATC 1 cut(s) 20
BspT104I TTCGAA 1 cut(s) 265
BsrDI GCAATG 1 cut(s) 257
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 1 cut(s) 25
BssT1I CCWWGG 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 377
Bst4CI ACNGT 4 cut(s) 20, 105, 327, 357
BstBI TTCGAA 1 cut(s) 265
BstF5I GGATG 1 cut(s) 301
BstKTI GATC 1 cut(s) 28
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 118
BstNI CCWGG 1 cut(s) 377
BstSCI CCNGG 1 cut(s) 375
BstSFI CTRYAG 2 cut(s) 230, 323
BstV1I GCAGC 1 cut(s) 244
BstV2I GAAGAC 1 cut(s) 106
BtsCI GGATG 1 cut(s) 301
BtsIMutI CAGTG 3 cut(s) 25, 192, 332
CaiI CAGNNNCTG 1 cut(s) 191
CciI TCATGA 1 cut(s) 286
CviAII CATG 1 cut(s) 287
CviJI RGCY 5 cut(s) 71, 121, 137, 152, 235
CviKI_1 RGCY 5 cut(s) 71, 121, 137, 152, 235
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 75
Eco57I CTGAAG 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 375
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 1 cut(s) 290
FaiI YATR 4 cut(s) 15, 65, 156, 288
FatI CATG 1 cut(s) 286
Fnu4HI GCNGC 1 cut(s) 233
FokI GGATG 1 cut(s) 288
Fsp4HI GCNGC 1 cut(s) 233
GluI GCNGC 1 cut(s) 233
Hin1II CATG 1 cut(s) 290
HindIII AAGCTT 1 cut(s) 150
HinfI GANTC 3 cut(s) 127, 315, 380
Hpy166II GTNNAC 2 cut(s) 55, 166
Hpy188III TCNNGA 4 cut(s) 29, 92, 287, 305
Hpy8I GTNNAC 2 cut(s) 55, 166
HpyAV CCTTC 2 cut(s) 89, 287
HpyCH4III ACNGT 4 cut(s) 20, 105, 327, 357
HpyCH4V TGCA 4 cut(s) 112, 209, 232, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 118
Hsp92II CATG 1 cut(s) 290
Kzo9I GATC 1 cut(s) 25
LmnI GCTCC 2 cut(s) 79, 282
LpnPI CCDG 5 cut(s) 42, 322, 362, 375, 389
Lsp1109I GCAGC 1 cut(s) 244
MaeIII GTNAC 2 cut(s) 187, 385
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 3 cut(s) 111, 302, 364
MluCI AATT 2 cut(s) 159, 198
MnlI CCTC 2 cut(s) 82, 282
MroXI GAANNNNTTC 3 cut(s) 36, 297, 371
MseI TTAA 2 cut(s) 362, 397
MspR9I CCNGG 1 cut(s) 377
Mva1269I GAATGC 1 cut(s) 209
MvaI CCWGG 1 cut(s) 377
MwoI GCNNNNNNNGC 1 cut(s) 118
NdeII GATC 1 cut(s) 25
NlaIII CATG 1 cut(s) 290
NmuCI GTSAC 1 cut(s) 187
NspV TTCGAA 1 cut(s) 265
PagI TCATGA 1 cut(s) 286
PctI GAATGC 1 cut(s) 209
PdmI GAANNNNTTC 3 cut(s) 36, 297, 371
PfeI GAWTC 3 cut(s) 127, 315, 380
PfoI TCCNGGA 1 cut(s) 375
PkrI GCNGC 1 cut(s) 234
PsiI TTATAA 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 375
PspGI CCWGG 1 cut(s) 375
PstI CTGCAG 1 cut(s) 234
PstNI CAGNNNCTG 1 cut(s) 191
SaqAI TTAA 2 cut(s) 362, 397
SatI GCNGC 1 cut(s) 233
Sau3AI GATC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 377
SetI ASST 6 cut(s) 63, 139, 154, 298, 324, 341
SfcI CTRYAG 2 cut(s) 230, 323
SfuI TTCGAA 1 cut(s) 265
Sse9I AATT 2 cut(s) 159, 198
StyD4I CCNGG 1 cut(s) 375
StyI CCWWGG 1 cut(s) 75
TaaI ACNGT 4 cut(s) 20, 105, 327, 357
TaqI TCGA 1 cut(s) 265
TasI AATT 2 cut(s) 159, 198
TfiI GAWTC 3 cut(s) 127, 315, 380
Tru1I TTAA 2 cut(s) 362, 397
Tru9I TTAA 2 cut(s) 362, 397
TscAI CASTG 3 cut(s) 25, 192, 332
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 1 cut(s) 232
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 6 cut(s) 17, 21, 162, 275, 290, 303
TspGWI ACGGA 1 cut(s) 192
TspRI CASTG 3 cut(s) 25, 192, 332
XmnI GAANNNNTTC 3 cut(s) 36, 297, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.