Rh5AG298800

Protein transport protein Sec24-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0009667
Physical Location & Seq
Reverse (-)
41733067 .. 41734848
1782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG298800.1

Sequence Viewer

Length: 432 bp
ATGAATGAACTCTATGACAGTGTTGATCCTGAAGTGGTTCTCTCATTACTTGTTCACAAGGTTATATTAGCCTCCTTGGAGCAAGGGGTTCGGGAAGGAAGACTGTTATTGCACGATTGGCTTGTGATTCTGACAGTTCAATACAATGAAGCTCATAAACTTGTTCACTACAAGAACGGAAGTTCAGTGACTGCCCAAATTGATGTTGCATTCTCACAATGCCCCGAACAGCAGCCTTTACCCCGATTAGTTTTTGCATTGCTTCGAAATCCTCTGCTCCTTTTTCATGAAGAAGGTGTTCACCCCGATTACCAAATCTACCTACAGTGTCTTTTCAGTGCACTTGAACCAAGTTCACTTCATCGTGCCGTGTATCCAGTCCTCACCTCATATTCTACTCCCGATAAACTAGCATACCCACAAGCTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Sec23_helical Sec23_trunk zf-Sec23_Sec24

Protein Analysis

143

Amino Acids

16.28

Weight (kDa)

5.73

Isoelectric Point (pI)

42.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec23_helical PF04815 9 - 120 7.9e-13 Sec23/Sec24 helical domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 20
AcuI CTGAAG 1 cut(s) 51
AgsI TTSAA 2 cut(s) 140, 347
AluBI AGCT 2 cut(s) 152, 425
AluI AGCT 2 cut(s) 152, 425
Alw21I GWGCWC 1 cut(s) 343
Alw44I GTGCAC 1 cut(s) 339
AlwI GGATC 1 cut(s) 20
AlwNI CAGNNNCTG 1 cut(s) 191
ApaLI GTGCAC 1 cut(s) 339
ApeKI GCWGC 1 cut(s) 232
Asp700I GAANNNNTTC 2 cut(s) 36, 297
AsuHPI GGTGA 2 cut(s) 293, 376
AsuII TTCGAA 1 cut(s) 265
BaeGI GKGCMC 1 cut(s) 343
BbsI GAAGAC 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 343
BbvI GCAGC 1 cut(s) 244
BceAI ACGGC 1 cut(s) 353
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BciVI GTATCC 1 cut(s) 384
BfaI CTAG 2 cut(s) 410, 426
BfmI CTRYAG 1 cut(s) 323
BfuI GTATCC 1 cut(s) 384
BisI GCNGC 1 cut(s) 233
BlsI GCNGC 1 cut(s) 234
BpiI GAAGAC 1 cut(s) 106
Bpu14I TTCGAA 1 cut(s) 265
BsaJI CCNNGG 1 cut(s) 75
Bse1I ACTGG 1 cut(s) 377
Bse3DI GCAATG 1 cut(s) 257
BseDI CCNNGG 1 cut(s) 75
BseMI GCAATG 1 cut(s) 257
BseNI ACTGG 1 cut(s) 377
BseSI GKGCMC 1 cut(s) 343
BseXI GCAGC 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 343
BsmI GAATGC 1 cut(s) 209
Bsp119I TTCGAA 1 cut(s) 265
Bsp1286I GDGCHC 1 cut(s) 343
Bsp143I GATC 1 cut(s) 25
BspHI TCATGA 1 cut(s) 286
BspPI GGATC 1 cut(s) 20
BspT104I TTCGAA 1 cut(s) 265
BsrDI GCAATG 1 cut(s) 257
BsrI ACTGG 1 cut(s) 377
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 1 cut(s) 25
BssT1I CCWWGG 1 cut(s) 75
Bst4CI ACNGT 4 cut(s) 20, 105, 136, 327
BstBI TTCGAA 1 cut(s) 265
BstKTI GATC 1 cut(s) 28
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 118
BstSFI CTRYAG 1 cut(s) 323
BstSLI GKGCMC 1 cut(s) 343
BstV1I GCAGC 1 cut(s) 244
BstV2I GAAGAC 1 cut(s) 106
BsuI GTATCC 1 cut(s) 384
BtsIMutI CAGTG 4 cut(s) 25, 192, 332, 343
CaiI CAGNNNCTG 1 cut(s) 191
CciI TCATGA 1 cut(s) 286
CviAII CATG 1 cut(s) 287
CviJI RGCY 5 cut(s) 71, 121, 152, 235, 425
CviKI_1 RGCY 5 cut(s) 71, 121, 152, 235, 425
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 75
Eco57I CTGAAG 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 1 cut(s) 290
FaiI YATR 6 cut(s) 15, 65, 156, 288, 391, 415
FatI CATG 1 cut(s) 286
Fnu4HI GCNGC 1 cut(s) 233
Fsp4HI GCNGC 1 cut(s) 233
FspBI CTAG 2 cut(s) 410, 426
GluI GCNGC 1 cut(s) 233
Hin1II CATG 1 cut(s) 290
HinfI GANTC 1 cut(s) 127
HphI GGTGA 2 cut(s) 293, 376
Hpy166II GTNNAC 5 cut(s) 55, 166, 301, 341, 356
Hpy188I TCNGA 1 cut(s) 132
Hpy188III TCNNGA 4 cut(s) 29, 92, 287, 401
Hpy8I GTNNAC 5 cut(s) 55, 166, 301, 341, 356
HpyAV CCTTC 2 cut(s) 89, 287
HpyCH4III ACNGT 4 cut(s) 20, 105, 136, 327
HpyCH4V TGCA 4 cut(s) 112, 209, 257, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 118
Hsp92II CATG 1 cut(s) 290
Kzo9I GATC 1 cut(s) 25
LmnI GCTCC 2 cut(s) 79, 282
LpnPI CCDG 2 cut(s) 42, 390
Lsp1109I GCAGC 1 cut(s) 244
MaeI CTAG 2 cut(s) 410, 426
MaeIII GTNAC 1 cut(s) 187
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 2 cut(s) 111, 302
MhlI GDGCHC 1 cut(s) 343
MluCI AATT 1 cut(s) 198
MnlI CCTC 4 cut(s) 82, 282, 392, 397
MroXI GAANNNNTTC 2 cut(s) 36, 297
Mva1269I GAATGC 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 118
NdeII GATC 1 cut(s) 25
NlaIII CATG 1 cut(s) 290
NmuCI GTSAC 1 cut(s) 187
NspV TTCGAA 1 cut(s) 265
PagI TCATGA 1 cut(s) 286
PctI GAATGC 1 cut(s) 209
PdmI GAANNNNTTC 2 cut(s) 36, 297
PfeI GAWTC 1 cut(s) 127
PkrI GCNGC 1 cut(s) 234
PstNI CAGNNNCTG 1 cut(s) 191
SatI GCNGC 1 cut(s) 233
Sau3AI GATC 1 cut(s) 25
SduI GDGCHC 1 cut(s) 343
SetI ASST 6 cut(s) 63, 154, 298, 324, 389, 427
SfcI CTRYAG 1 cut(s) 323
SfuI TTCGAA 1 cut(s) 265
Sse9I AATT 1 cut(s) 198
SspMI CTAG 2 cut(s) 410, 426
StyI CCWWGG 1 cut(s) 75
TaaI ACNGT 4 cut(s) 20, 105, 136, 327
TaqI TCGA 1 cut(s) 265
TasI AATT 1 cut(s) 198
TfiI GAWTC 1 cut(s) 127
TscAI CASTG 4 cut(s) 25, 192, 332, 343
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 1 cut(s) 232
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 6 cut(s) 17, 21, 162, 275, 303, 350
TspGWI ACGGA 1 cut(s) 192
TspRI CASTG 4 cut(s) 25, 192, 332, 343
VneI GTGCAC 1 cut(s) 339
XmnI GAANNNNTTC 2 cut(s) 36, 297
XspI CTAG 2 cut(s) 410, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.