Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009730

Physical Location & Seq

Genomic Coordinates Forward (+)

39102177 .. 39102404

Gene Structure 228 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57288

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGGGTTTTGTGTGTTTGGAAATATTGCAATTGCAGCTCATTATGCTCAACGTGCATATGGCTTGAAGGGTGTCTTTATAATTGATTTTGATGTTCACCACGGGAATGGGACAAATGATGCTTTCTATCAGGATCCGGATATATTCTTCCTTTCAACTCACCAAGTAACAATTTTCGATACATTGTCTGTTCAAATTTATTTATATGTTCTTGTTATGCTAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006476 GO:0006807 GO:0008092 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015631 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0033558 GO:0035601 GO:0036211 GO:0042903 GO:0043014 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048487 GO:0051721 GO:0071704 GO:0090042 GO:0098732 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

75

Amino Acids

8.46

Weight (kDa)

5.12

Isoelectric Point (pI)

14.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hist_deacetyl	PF00850	1 - 56	1.9e-23	Histone deacetylase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0009730)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0346631 RchiOBHm_Chr6g0252021 RchiOBHm_Chr6g0304611
rosa_multiflora	Rmu_sc0002351.1_g000007 Rmu_sc0003184.1_g000002 Rmu_sc0006376.1_g000007 Rmu_sc0006898.1_g000006 Rmu_sc0010612.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102900 Rroxscaffold_2G00109440 Rroxscaffold_3G00235090 Rroxscaffold_3G00238760 Rroxscaffold_4G00282250 Rroxscaffold_4G00321940 Rroxscaffold_5G00352030 Rroxscaffold_7G00196880
rosa_rugosa	Rorug02G0426000 Rorug04G0211700 Rorug04G0211800 Rorug04G0211900
rosa_samantha	Rh4CG277400 Rh5AG273500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	80
AccIII	TCCGGA	1 cut(s)	136
AclWI	GGATC	2 cut(s)	128, 141
AcsI	RAATTY	1 cut(s)	195
AgsI	TTSAA	3 cut(s)	67, 156, 194
AluBI	AGCT	1 cut(s)	38
AluI	AGCT	1 cut(s)	38
AlwI	GGATC	2 cut(s)	128, 141
Aor13HI	TCCGGA	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	1 cut(s)	195
AsuHPI	GGTGA	2 cut(s)	89, 152
BamHI	GGATCC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	47
BfaI	CTAG	2 cut(s)	221, 226
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	135
BmsI	GCATC	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	100
BsaWI	WCCGGW	1 cut(s)	136
BseAI	TCCGGA	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	100
BseXI	GCAGC	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	124
Bsp13I	TCCGGA	1 cut(s)	136
Bsp143I	GATC	1 cut(s)	133
BspEI	TCCGGA	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	135
BspPI	GGATC	2 cut(s)	128, 141
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	1 cut(s)	133
BstDSI	CCRYGG	1 cut(s)	100
BstKTI	GATC	1 cut(s)	136
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 44, 53
BstV1I	GCAGC	1 cut(s)	47
BstX2I	RGATCY	1 cut(s)	133
BstXI	CCANNNNNNTGG	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	133
BtgI	CCRYGG	1 cut(s)	100
CviJI	RGCY	2 cut(s)	38, 63
CviKI_1	RGCY	2 cut(s)	38, 63
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
FaiI	YATR	8 cut(s)	45, 58, 60, 80, 143, 205, 207, 218
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FaqI	GGGAC	1 cut(s)	124
FauNDI	CATATG	1 cut(s)	58
Fnu4HI	GCNGC	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	36
FspBI	CTAG	2 cut(s)	221, 226
GluI	GCNGC	1 cut(s)	36
HapII	CCGG	1 cut(s)	137
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	2 cut(s)	89, 152
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188III	TCNNGA	2 cut(s)	131, 137
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	1 cut(s)	61
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	3 cut(s)	29, 35, 56
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 44, 53
HpySE526I	ACGT	1 cut(s)	52
Kpn2I	TCCGGA	1 cut(s)	136
Kzo9I	GATC	1 cut(s)	133
LpnPI	CCDG	2 cut(s)	116, 150
Lsp1109I	GCAGC	1 cut(s)	47
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	2 cut(s)	221, 226
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	1 cut(s)	139
MfeI	CAATTG	1 cut(s)	30
MflI	RGATCY	1 cut(s)	133
MluCI	AATT	4 cut(s)	30, 81, 171, 195
MroI	TCCGGA	1 cut(s)	136
MslI	CAYNNNNRTG	1 cut(s)	105
MspI	CCGG	1 cut(s)	137
MunI	CAATTG	1 cut(s)	30
MwoI	GCNNNNNNNGC	3 cut(s)	35, 44, 53
NdeI	CATATG	1 cut(s)	58
NdeII	GATC	1 cut(s)	133
NlaIV	GGNNCC	1 cut(s)	135
PkrI	GCNGC	1 cut(s)	37
PsiI	TTATAA	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	135
PsuI	RGATCY	1 cut(s)	133
RseI	CAYNNNNRTG	1 cut(s)	105
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	1 cut(s)	133
SetI	ASST	2 cut(s)	40, 55
SfaNI	GCATC	1 cut(s)	109
SgeI	CNNG	8 cut(s)	65, 76, 113, 115, 143, 149, 176, 224
SmiMI	CAYNNNNRTG	1 cut(s)	105
Sse9I	AATT	4 cut(s)	30, 81, 171, 195
SspI	AATATT	1 cut(s)	25
SspMI	CTAG	2 cut(s)	221, 226
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	1 cut(s)	177
TasI	AATT	4 cut(s)	30, 81, 171, 195
TseI	GCWGC	1 cut(s)	35
XapI	RAATTY	1 cut(s)	195
XspI	CTAG	2 cut(s)	221, 226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.