Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0009730

Physical Location & Seq

Genomic Coordinates Reverse (-)

21874337 .. 21875387

Gene Structure 1051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00235090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGCTGCTTGACAAAAGAACATCGGGTTCGAGCGCAAAGAAGAGCGACGAGTCGGAGTTTTTGGAAAACGGGTGGGATGCGGAGCTCGGCTTTCCCATCACATTTCGGTTAATTGGCGCTAGTTCAATAACCATGGGGAATACTTGTTATCTCAATTCGGTGTTGCAGTGGTTGACATATACTGAGCCTTTAGTTGCCTACTTGCAAAGTGTTCAATTGATGGTAGAAGAGTCAAAGAACAGCAGGGATCCACCTACCGGTTTTGCTTTAATAAGACCTCCAGGACACCATGCAATTCCAAAGGGTCCGATGGGGTTTTGTGTGTTTGGAAATATTGCAATTTCAGCTCATTATGCTCAGCGTGCACATGGCTTGAAGGGTGTCTTTATAATTGATTTTGATGTTCACCACGGGAATGGGACAAATGATGCTTTCTATGAGGATCCGGATATATTCTTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006476 GO:0006807 GO:0008092 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015631 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0033558 GO:0035601 GO:0036211 GO:0042903 GO:0043014 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048487 GO:0051721 GO:0071704 GO:0090042 GO:0098732 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

154

Amino Acids

17.03

Weight (kDa)

5.39

Isoelectric Point (pI)

35.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCH	PF00443	45 - 81	5.6e-06	Ubiquitin carboxyl-terminal hydrolase
Hist_deacetyl	PF00850	66 - 154	2e-29	Histone deacetylase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009730)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0346631 RchiOBHm_Chr6g0252021 RchiOBHm_Chr6g0304611
rosa_multiflora	Rmu_sc0002351.1_g000007 Rmu_sc0003184.1_g000002 Rmu_sc0006376.1_g000007 Rmu_sc0006898.1_g000006 Rmu_sc0010612.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102900 Rroxscaffold_2G00109440 Rroxscaffold_3G00235090 Rroxscaffold_3G00238760 Rroxscaffold_4G00282250 Rroxscaffold_4G00321940 Rroxscaffold_5G00352030 Rroxscaffold_7G00196880
rosa_rugosa	Rorug02G0426000 Rorug04G0211700 Rorug04G0211800 Rorug04G0211900
rosa_samantha	Rh4CG277400 Rh5AG273500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	389
AccIII	TCCGGA	1 cut(s)	445
AciI	CCGC	1 cut(s)	80
AclWI	GGATC	4 cut(s)	242, 255, 437, 450
AfiI	CCNNNNNNNGG	1 cut(s)	257
AgeI	ACCGGT	1 cut(s)	257
AgsI	TTSAA	3 cut(s)	126, 215, 376
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	2 cut(s)	85, 347
AluI	AGCT	2 cut(s)	85, 347
Alw21I	GWGCWC	2 cut(s)	87, 367
Alw44I	GTGCAC	1 cut(s)	363
AlwI	GGATC	4 cut(s)	242, 255, 437, 450
Aor13HI	TCCGGA	1 cut(s)	445
ApaLI	GTGCAC	1 cut(s)	363
ApeKI	GCWGC	1 cut(s)	4
AsiGI	ACCGGT	1 cut(s)	257
AspLEI	GCGC	2 cut(s)	35, 119
AspS9I	GGNCC	1 cut(s)	305
AsuHPI	GGTGA	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	305
BaeGI	GKGCMC	1 cut(s)	367
BamHI	GGATCC	2 cut(s)	247, 442
BanII	GRGCYC	1 cut(s)	87
Bbv12I	GWGCWC	2 cut(s)	87, 367
BccI	CCATC	3 cut(s)	104, 214, 304
BciT130I	CCWGG	1 cut(s)	282
BfaI	CTAG	1 cut(s)	120
BfoI	RGCGCY	1 cut(s)	120
BisI	GCNGC	1 cut(s)	5
BlpI	GCTNAGC	1 cut(s)	357
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	282
Bme18I	GGWCC	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	305
BmiI	GGNNCC	3 cut(s)	249, 306, 444
BmrFI	CCNGG	1 cut(s)	282
BmsI	GCATC	2 cut(s)	67, 418
BpmI	CTGGAG	1 cut(s)	264
Bpu1102I	GCTNAGC	1 cut(s)	357
BsaJI	CCNNGG	2 cut(s)	132, 409
BsaWI	WCCGGW	2 cut(s)	257, 445
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse118I	RCCGGY	1 cut(s)	257
BseAI	TCCGGA	1 cut(s)	445
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	2 cut(s)	132, 409
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMII	CTCAG	2 cut(s)	174, 371
BseSI	GKGCMC	1 cut(s)	367
BshTI	ACCGGT	1 cut(s)	257
BsiHKAI	GWGCWC	2 cut(s)	87, 367
BsiSI	CCGG	2 cut(s)	258, 446
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmFI	GGGAC	1 cut(s)	433
Bsp1286I	GDGCHC	2 cut(s)	87, 367
Bsp13I	TCCGGA	1 cut(s)	445
Bsp143I	GATC	2 cut(s)	247, 442
Bsp1720I	GCTNAGC	1 cut(s)	357
Bsp19I	CCATGG	1 cut(s)	132
BspACI	CCGC	1 cut(s)	80
BspCNI	CTCAG	2 cut(s)	175, 370
BspEI	TCCGGA	1 cut(s)	445
BspLI	GGNNCC	3 cut(s)	249, 306, 444
BspPI	GGATC	4 cut(s)	242, 255, 437, 450
BspQI	GCTCTTC	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	257
BssAI	RCCGGY	1 cut(s)	257
BssECI	CCNNGG	2 cut(s)	132, 409
BssMI	GATC	2 cut(s)	247, 442
BssT1I	CCWWGG	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	282
Bst6I	CTCTTC	2 cut(s)	35, 222
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	2 cut(s)	183, 357
BstDSI	CCRYGG	2 cut(s)	132, 409
BstF5I	GGATG	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	120
BstHHI	GCGC	2 cut(s)	35, 119
BstKTI	GATC	2 cut(s)	250, 445
BstMBI	GATC	2 cut(s)	247, 442
BstMWI	GCNNNNNNNGC	3 cut(s)	344, 353, 362
BstNI	CCWGG	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	280
BstSLI	GKGCMC	1 cut(s)	367
BstX2I	RGATCY	2 cut(s)	247, 442
BstXI	CCANNNNNNTGG	1 cut(s)	416
BstYI	RGATCY	2 cut(s)	247, 442
BtgI	CCRYGG	2 cut(s)	132, 409
BtsCI	GGATG	1 cut(s)	82
BtsI	GCAGTG	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	173
Cac8I	GCNNGC	1 cut(s)	363
CfoI	GCGC	2 cut(s)	35, 119
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	305
CspAI	ACCGGT	1 cut(s)	257
CviAII	CATG	3 cut(s)	133, 290, 368
CviJI	RGCY	5 cut(s)	85, 90, 187, 347, 372
CviKI_1	RGCY	5 cut(s)	85, 90, 187, 347, 372
DdeI	CTNAG	2 cut(s)	183, 357
DpnI	GATC	2 cut(s)	249, 444
DpnII	GATC	2 cut(s)	247, 442
Eam1104I	CTCTTC	2 cut(s)	35, 222
EarI	CTCTTC	2 cut(s)	35, 222
Ecl136II	GAGCTC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	305
Eco53kI	GAGCTC	1 cut(s)	85
EcoICRI	GAGCTC	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	280
EcoT14I	CCWWGG	1 cut(s)	132
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	3 cut(s)	136, 293, 371
FaiI	YATR	9 cut(s)	134, 178, 180, 291, 354, 369, 389, 438, 452
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	3 cut(s)	132, 289, 367
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	1 cut(s)	89
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	1 cut(s)	120
GlaI	GCGC	2 cut(s)	34, 118
GluI	GCNGC	1 cut(s)	5
GsuI	CTGGAG	1 cut(s)	264
HaeII	RGCGCY	1 cut(s)	120
HapII	CCGG	2 cut(s)	258, 446
HhaI	GCGC	2 cut(s)	35, 119
Hin1II	CATG	3 cut(s)	136, 293, 371
Hin6I	GCGC	2 cut(s)	33, 117
HinP1I	GCGC	2 cut(s)	33, 117
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HinfI	GANTC	2 cut(s)	50, 230
HpaII	CCGG	2 cut(s)	258, 446
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	3 cut(s)	174, 365, 406
Hpy188I	TCNGA	2 cut(s)	55, 309
Hpy188III	TCNNGA	1 cut(s)	446
Hpy8I	GTNNAC	3 cut(s)	174, 365, 406
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	1 cut(s)	370
HpyCH4V	TGCA	5 cut(s)	166, 205, 293, 338, 365
HpyF10VI	GCNNNNNNNGC	3 cut(s)	344, 353, 362
HpyF3I	CTNAG	2 cut(s)	183, 357
Hsp92II	CATG	3 cut(s)	136, 293, 371
HspAI	GCGC	2 cut(s)	33, 117
Kpn2I	TCCGGA	1 cut(s)	445
Kzo9I	GATC	2 cut(s)	247, 442
LguI	GCTCTTC	1 cut(s)	35
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	5 cut(s)	229, 267, 271, 294, 459
LweI	GCATC	2 cut(s)	67, 418
MaeI	CTAG	1 cut(s)	120
MalI	GATC	2 cut(s)	249, 444
MboI	GATC	2 cut(s)	247, 442
MboII	GAAGA	3 cut(s)	52, 239, 448
MfeI	CAATTG	1 cut(s)	215
MflI	RGATCY	2 cut(s)	247, 442
MhlI	GDGCHC	2 cut(s)	87, 367
MluCI	AATT	6 cut(s)	111, 154, 215, 294, 339, 390
MlyI	GAGTC	2 cut(s)	59, 239
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	2 cut(s)	288, 433
MroI	TCCGGA	1 cut(s)	445
MseI	TTAA	2 cut(s)	110, 269
MslI	CAYNNNNRTG	1 cut(s)	414
MspI	CCGG	2 cut(s)	258, 446
MspR9I	CCNGG	1 cut(s)	282
MunI	CAATTG	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	3 cut(s)	344, 353, 362
NcoI	CCATGG	1 cut(s)	132
NdeII	GATC	2 cut(s)	247, 442
NlaIII	CATG	3 cut(s)	136, 293, 371
NlaIV	GGNNCC	3 cut(s)	249, 306, 444
NmeAIII	GCCGAG	1 cut(s)	66
PciSI	GCTCTTC	1 cut(s)	35
PfoI	TCCNGGA	1 cut(s)	280
PinAI	ACCGGT	1 cut(s)	257
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	2 cut(s)	58, 238
PpsI	GAGTC	2 cut(s)	58, 238
PsiI	TTATAA	1 cut(s)	389
Psp124BI	GAGCTC	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	3 cut(s)	249, 306, 444
PspPI	GGNCC	1 cut(s)	305
PsuI	RGATCY	2 cut(s)	247, 442
RseI	CAYNNNNRTG	1 cut(s)	414
SacI	GAGCTC	1 cut(s)	87
SapI	GCTCTTC	1 cut(s)	35
SaqAI	TTAA	2 cut(s)	110, 269
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	2 cut(s)	247, 442
Sau96I	GGNCC	1 cut(s)	305
SchI	GAGTC	2 cut(s)	59, 239
ScrFI	CCNGG	1 cut(s)	282
SduI	GDGCHC	2 cut(s)	87, 367
SetI	ASST	4 cut(s)	87, 256, 280, 349
SfaNI	GCATC	2 cut(s)	67, 418
SinI	GGWCC	1 cut(s)	305
SmiMI	CAYNNNNRTG	1 cut(s)	414
Sse9I	AATT	6 cut(s)	111, 154, 215, 294, 339, 390
SsiI	CCGC	1 cut(s)	80
SspI	AATATT	1 cut(s)	334
SspMI	CTAG	1 cut(s)	120
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	280
StyI	CCWWGG	1 cut(s)	132
TaqI	TCGA	1 cut(s)	29
TasI	AATT	6 cut(s)	111, 154, 215, 294, 339, 390
Tru1I	TTAA	2 cut(s)	110, 269
Tru9I	TTAA	2 cut(s)	110, 269
TscAI	CASTG	1 cut(s)	173
TseI	GCWGC	1 cut(s)	4
TspRI	CASTG	1 cut(s)	173
VneI	GTGCAC	1 cut(s)	363
VpaK11BI	GGWCC	1 cut(s)	305
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.