Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009730

Physical Location & Seq

Genomic Coordinates Reverse (-)

25231733 .. 25232911

Gene Structure 1179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00102900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGTCTTCGAAGAAGAATTCCTCTAGTTCAATTGATGGTAGAAGAGTCAAAGAACAGCAGGGATCCACCTACCAGCTTTGCTTTAATAAGACCTCCAGACACCATGCAATTCCAAAGGGTCCGAAGGGGTTTTGTGTGTTTGGAAATATTGCAATTGCAGCTCATTATGCTCAGCGTGCACATGGCTTGAAGGGTGTCTTTATAATTGATTTTGATGTTCACCACGGGAATGGGACAAATGATGCTTTCTATGAGGATCCGGATATATTCTTCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006476 GO:0006807 GO:0008092 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015631 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0033558 GO:0035601 GO:0036211 GO:0042903 GO:0043014 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048487 GO:0051721 GO:0071704 GO:0090042 GO:0098732 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

92

Amino Acids

10.23

Weight (kDa)

9.03

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hist_deacetyl	PF00850	22 - 92	4.7e-26	Histone deacetylase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009730)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0346631 RchiOBHm_Chr6g0252021 RchiOBHm_Chr6g0304611
rosa_multiflora	Rmu_sc0002351.1_g000007 Rmu_sc0003184.1_g000002 Rmu_sc0006376.1_g000007 Rmu_sc0006898.1_g000006 Rmu_sc0010612.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102900 Rroxscaffold_2G00109440 Rroxscaffold_3G00235090 Rroxscaffold_3G00238760 Rroxscaffold_4G00282250 Rroxscaffold_4G00321940 Rroxscaffold_5G00352030 Rroxscaffold_7G00196880
rosa_rugosa	Rorug02G0426000 Rorug04G0211700 Rorug04G0211800 Rorug04G0211900
rosa_samantha	Rh4CG277400 Rh5AG273500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	203
AccIII	TCCGGA	1 cut(s)	259
AclWI	GGATC	4 cut(s)	57, 70, 251, 264
AcsI	RAATTY	1 cut(s)	16
AgsI	TTSAA	2 cut(s)	30, 190
AluBI	AGCT	2 cut(s)	76, 161
AluI	AGCT	2 cut(s)	76, 161
Alw21I	GWGCWC	1 cut(s)	181
Alw44I	GTGCAC	1 cut(s)	177
AlwI	GGATC	4 cut(s)	57, 70, 251, 264
Aor13HI	TCCGGA	1 cut(s)	259
ApaLI	GTGCAC	1 cut(s)	177
ApeKI	GCWGC	1 cut(s)	158
ApoI	RAATTY	1 cut(s)	16
AspS9I	GGNCC	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	212
AsuII	TTCGAA	1 cut(s)	8
AvaII	GGWCC	1 cut(s)	119
BaeGI	GKGCMC	1 cut(s)	181
BamHI	GGATCC	2 cut(s)	62, 256
Bbv12I	GWGCWC	1 cut(s)	181
BbvI	GCAGC	1 cut(s)	170
BccI	CCATC	1 cut(s)	29
BfaI	CTAG	1 cut(s)	24
BisI	GCNGC	1 cut(s)	159
BlpI	GCTNAGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	160
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	3 cut(s)	64, 120, 258
BmsI	GCATC	1 cut(s)	232
BpmI	CTGGAG	1 cut(s)	79
Bpu1102I	GCTNAGC	1 cut(s)	171
Bpu14I	TTCGAA	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	223
BsaWI	WCCGGW	1 cut(s)	259
BseAI	TCCGGA	1 cut(s)	259
BseDI	CCNNGG	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	185
BseSI	GKGCMC	1 cut(s)	181
BseXI	GCAGC	1 cut(s)	170
BsiHKAI	GWGCWC	1 cut(s)	181
BsiSI	CCGG	1 cut(s)	260
BslFI	GGGAC	1 cut(s)	247
BsmFI	GGGAC	1 cut(s)	247
Bsp119I	TTCGAA	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp13I	TCCGGA	1 cut(s)	259
Bsp143I	GATC	2 cut(s)	62, 256
Bsp1720I	GCTNAGC	1 cut(s)	171
BspCNI	CTCAG	1 cut(s)	184
BspEI	TCCGGA	1 cut(s)	259
BspLI	GGNNCC	3 cut(s)	64, 120, 258
BspPI	GGATC	4 cut(s)	57, 70, 251, 264
BspT104I	TTCGAA	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	2 cut(s)	62, 256
Bst6I	CTCTTC	1 cut(s)	37
BstBI	TTCGAA	1 cut(s)	8
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	1 cut(s)	171
BstDSI	CCRYGG	1 cut(s)	223
BstKTI	GATC	2 cut(s)	65, 259
BstMBI	GATC	2 cut(s)	62, 256
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 167, 176
BstSLI	GKGCMC	1 cut(s)	181
BstV1I	GCAGC	1 cut(s)	170
BstX2I	RGATCY	2 cut(s)	62, 256
BstXI	CCANNNNNNTGG	1 cut(s)	230
BstYI	RGATCY	2 cut(s)	62, 256
BtgI	CCRYGG	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	177
Cfr13I	GGNCC	1 cut(s)	119
CviAII	CATG	2 cut(s)	104, 182
CviJI	RGCY	3 cut(s)	76, 161, 186
CviKI_1	RGCY	3 cut(s)	76, 161, 186
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	2 cut(s)	64, 258
DpnII	GATC	2 cut(s)	62, 256
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	119
EcoRI	GAATTC	1 cut(s)	16
FaeI	CATG	2 cut(s)	107, 185
FaiI	YATR	6 cut(s)	105, 168, 183, 203, 252, 266
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	2 cut(s)	103, 181
Fnu4HI	GCNGC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	1 cut(s)	24
GluI	GCNGC	1 cut(s)	159
GsuI	CTGGAG	1 cut(s)	79
HapII	CCGG	1 cut(s)	260
Hin1II	CATG	2 cut(s)	107, 185
HinfI	GANTC	1 cut(s)	45
HpaII	CCGG	1 cut(s)	260
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	2 cut(s)	179, 220
Hpy188I	TCNGA	1 cut(s)	123
Hpy188III	TCNNGA	2 cut(s)	96, 260
Hpy8I	GTNNAC	2 cut(s)	179, 220
HpyAV	CCTTC	2 cut(s)	118, 184
HpyCH4V	TGCA	4 cut(s)	107, 152, 158, 179
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 167, 176
HpyF3I	CTNAG	1 cut(s)	171
Hsp92II	CATG	2 cut(s)	107, 185
Kpn2I	TCCGGA	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	62, 256
LpnPI	CCDG	4 cut(s)	44, 86, 109, 273
Lsp1109I	GCAGC	1 cut(s)	170
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	24
MalI	GATC	2 cut(s)	64, 258
MboI	GATC	2 cut(s)	62, 256
MboII	GAAGA	4 cut(s)	22, 25, 54, 262
MfeI	CAATTG	2 cut(s)	30, 153
MflI	RGATCY	2 cut(s)	62, 256
MhlI	GDGCHC	1 cut(s)	181
MluCI	AATT	5 cut(s)	16, 30, 108, 153, 204
MlyI	GAGTC	1 cut(s)	54
MnlI	CCTC	3 cut(s)	31, 103, 247
MroI	TCCGGA	1 cut(s)	259
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	1 cut(s)	228
MspI	CCGG	1 cut(s)	260
MunI	CAATTG	2 cut(s)	30, 153
MwoI	GCNNNNNNNGC	3 cut(s)	158, 167, 176
NdeII	GATC	2 cut(s)	62, 256
NlaIII	CATG	2 cut(s)	107, 185
NlaIV	GGNNCC	3 cut(s)	64, 120, 258
NspV	TTCGAA	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	160
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PsiI	TTATAA	1 cut(s)	203
PspN4I	GGNNCC	3 cut(s)	64, 120, 258
PspPI	GGNCC	1 cut(s)	119
PsuI	RGATCY	2 cut(s)	62, 256
RseI	CAYNNNNRTG	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	2 cut(s)	62, 256
Sau96I	GGNCC	1 cut(s)	119
SchI	GAGTC	1 cut(s)	54
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	4 cut(s)	71, 78, 95, 163
SfaNI	GCATC	1 cut(s)	232
SfuI	TTCGAA	1 cut(s)	8
SinI	GGWCC	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	228
Sse9I	AATT	5 cut(s)	16, 30, 108, 153, 204
SspI	AATATT	1 cut(s)	148
SspMI	CTAG	1 cut(s)	24
TaqI	TCGA	1 cut(s)	8
TasI	AATT	5 cut(s)	16, 30, 108, 153, 204
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TseI	GCWGC	1 cut(s)	158
VneI	GTGCAC	1 cut(s)	177
VpaK11BI	GGWCC	1 cut(s)	119
XapI	RAATTY	1 cut(s)	16
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.